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Electronic structure of [(CpCr)[(CO)3M]]mu-Cot (M = Cr, Fe): a theoretical study.

The electronic structure of two cyclooctatetraene-bridged dinuclear first-row transition metal complexes of the type [(CpM)[(CO)3M']]mu-Cot (M = Cr; M' = Fe (1), Cr (2)) was investigated by complete active space self-consistent field (CASSCF) calculations. In this context the differences in the binding capabilities of the complex fragments CpM and (CO)3M are discussed on the basis of extended Huckel molecular orbital (MO) calculations. The geometries used for the CASSCF calculations for complex 1 were obtained from the crystal structure. For 2 a model structure was established by geometry optimization using density functional methods. The CASSCF results agree well with the experimental findings and provide insight into the binding situation of the two compounds. Complex 1 can be regarded as being composed of a chromocene-like subunit CpCr(eta5-C5H5) and the fragment (CO)3Fe(eta3-C3H3). A direct metal-metal bond is found, involving one initially singly occupied orbital of each fragment, leading to a doublet ground state for 1 with the remaining unpaired electron localized at the chromium center. For 2 no such direct metal-metal bond can be recognized. A very weak direct metal-metal interaction is induced by electron donation from the Cot2- ligand into a formally unoccupied metal-metal binding orbital combination. In the quartet ground state all three unpaired electrons are localized at the chromium center of the formally doubly positive charged CpCr unit, on which complex fragment [(CO)3Cr(eta5-Cot)]2- acts like a cyclopentadienyl ligand. The coordination sphere of the chromium center of the CpCr unit resembles that of a metallocene metal center and its metal 3d occupation scheme corresponds to that of vanadocene.

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Electronic structure of bases in DNA duplexes characterized by resonant photoemission spectroscopy near the Fermi level.

The electronic structure of bases in DNA duplexes was investigated by resonant photoemission spectroscopy near the Fermi level, in order to specify charge migration mechanisms. We observed a kinetic energy shift of N-KLL Auger electrons and an intensity enhancement of valence electrons on the resonant photoemission spectra for both poly(dG).poly(dC) and poly(dA).poly(dT) DNAs. These directly show the localized unoccupied states of the bases. We conclude that the charge hopping model is pertinent for electric conduction in a DNA duplex, when electrons pass through the unoccupied states.

Biophysics↗

Electronic structure of DNA nucleobases and their dinucleotides explored by soft X-ray spectroscopy.

The electronic structures of a series of DNA nucleobases and their dinucleotides were investigated by N 1s X-ray absorption, X-ray photoemission, and resonant X-ray emission spectroscopy. Resonant X-ray emission spectra of the guanine base and its dinucleotide indicate that it has a weak structure at the lowest binding energy; at this energy, it isolates from the main valence band and forms the HOMO state. This indicates that the HOMO state is localized in the guanine base, as claimed by valence and core photoemissions and expected from theoretical predictions. In addition, the XAS and XES profiles of the guanine dinucleotide indicate that disruption of the aromatic character of the six-membered ring results in the localization of the pi state at the imine (-N=) site of the guanine base; this may favor charge transfer among stacked guanine bases and further influence the conductivity of DNA.

Adenine↗

The reduced density matrix method for electronic structure calculations and the role of three-index representability conditions.

The variational approach for electronic structure based on the two-body reduced density matrix is studied, incorporating two representability conditions beyond the previously used P, Q, and G conditions. The additional conditions (called T1 and T2 here) are implicit in the work of Erdahl [Int. J. Quantum Chem. 13, 697 (1978)] and extend the well-known three-index diagonal conditions also known as the Weinhold-Wilson inequalities. The resulting optimization problem is a semidefinite program, a convex optimization problem for which computational methods have greatly advanced during the past decade. Formulating the reduced density matrix computation using the standard dual formulation of semidefinite programming, as opposed to the primal one, results in substantial computational savings and makes it possible to study larger systems than was done previously. Calculations of the ground state energy and the dipole moment are reported for 47 different systems, in each case using an STO-6G basis set and comparing with Hartree-Fock, singly and doubly substituted configuration interaction, Brueckner doubles (with triples), coupled cluster singles and doubles with perturbational treatment of triples, and full configuration interaction calculations. It is found that the use of the T1 and T2 conditions gives a significant improvement over just the P, Q, and G conditions, and provides in all cases that we have studied more accurate results than the other mentioned approximations.

Journal Article↗

Atomic and electronic structure of unreduced and reduced CeO2 surfaces: a first-principles study.

The atomic and electronic structure of (111), (110), and (100) surfaces of ceria (CeO2) were studied using density-functional theory within the generalized gradient approximation. Both stoichiometric surfaces and surfaces with oxygen vacancies (unreduced and reduced surfaces, respectively) have been examined. It is found that the (111) surface is the most stable among the considered surfaces, followed by (110) and (100) surfaces, in agreement with experimental observations and previous theoretical results. Different features of relaxation are found for the three surfaces. While the (111) surface undergoes very small relaxation, considerably larger relaxations are found for the (110) and (100) surfaces. The formation of an oxygen vacancy is closely related to the surface structure and occurs more easily for the (110) surface than for (111). The preferred vacancy location is in the surface layer for CeO2(110) and in the subsurface layer (the second O-atomic layer) for CeO2(111). For both surfaces, the O vacancy forms more readily than in the bulk. An interesting oscillatory behavior is found for the vacancy formation energy in the upper three layers of CeO2(111). Analysis of the reduced surfaces suggests that the additional charge resulting from the formation of the oxygen vacancies is localized in the first three layers of the surface. Furthermore, they are not only trapped in the 4f states of cerium.

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Potential Energy Curves and Electronic Structure of Copper Nitrides CuN and CuN+ Versus CuO and CuO+

Ab initio configuration interaction calculations for the diatomic CuO, CuN, CuO+, and CuN+ have been carried out, and potential energy curves are reported for several low-lying states of these systems. The electronic structure and bonding, not yet known for the neutral copper nitride and its cation, are examined and compared to those of the copper oxide systems. We find that the ground states of these systems are X2Pi (CuO), X3Sigma- (CuN), X3Sigma- (CuO+), and X4Sigma- (CuN+); their first low-lying excited states Y2Sigma+, 1Delta, 1Delta, and 2Pi are located at 0.69, 1.45, 2.32, and 2.09 eV, respectively. For CuO we found two unobserved quartet states, namely 4Sigma- (Te = 1.09 eV) and 4Pi (Te = 1.86 eV). We report equilibrium structural parameters for various electronic states of the studied systems and compare them with experimental values, where it is possible. Copyright 1999 Academic Press.

Journal Article↗

Electronic structure analysis of (In, Ga, Al) N heterostructures on the nanometre scale using EELS.

In this work the local electronic structure of MOVPE-grown (In, Ga, Al) N heterostructures has been investigated by electron energy loss spectroscopy (EELS). The cold field-emission scanning transmission electron microscope (VG HB501) used was equipped with a dedicated parallel EELS system which provides high dispersions at an energy resolution of 0.35 eV with the use of subnanometre electron probes the spatial resolution of the measurements depends on the physical localization of the scattering process itself and thus is in the order of nanometres. The low-loss region of the energy spectra gives information on plasmon excitations and transitions across the bandgap. The main problem on looking at the bandgap region of EELS spectra is to separate the bandgap signal from the fading tail of the zero-loss peak. High energy resolution and application of suitable deconvolution routines for removal of the zero-loss peak extract improved information from this energy region. Thus the EEL spectra of different group III nitrides reveal the onset of the bandgap itself and the characteristic shape of the joint density of states. From these results the local optical properties can be deduced via a Kramers-Kronig transformation. The data obtained show detailed structure on the energy scale and are in excellent agreement with optical ellipsometric results. In comparison with these techniques EELS methods yield a superior spatial resolution of better than 10 nm which enables detailed investigation of the effect of local defects and boundaries on the optical properties.

Journal Article↗

Effect of aggregation on the excited-state electronic structure of perylene studied by transient absorption spectroscopy.

The effect of aggregation on the excited-state electronic structure of perylene was studied through transient absorption measurements of isolated molecules, excimers, monomeric crystals (beta-perylene), and dimeric crystals (alpha-perylene). Changes of electronic state were clearly identified from the changes in transient absorption spectra. A detailed investigation was made by combining the obtained results with previous measurements of ground-state absorption and fluorescence spectra. The energy level of the ion-pair state in alpha-perylene crystals was estimated, and the results are compared with previous photoconductivity results. Moreover, the relaxation processes of excited states in alpha-perylene crystals were studied by femtosecond transient absorption measurements.

Journal Article↗

Electronic structure and photocatalytic characterization of a novel photocatalyst AgAlO2.

A novel photocatalyst, AgAlO2, was prepared by cation exchange reaction and characterized by powder X-ray diffraction. The result showed AgAlO2 crystallizes in the layered orthorhombic structure with space group was Pna2(1). The energy band and electronic structures of AgAlO2 were calculated based on the crystal structure. It was found that AgAlO2 is an indirect band gap semiconductor. The valence band top mainly consists of O-2p orbitals and Ag-4d orbitals and the conduction band bottom is mainly constructed of Ag-5s5p orbitals. The band gap of AgAlO2 was estimated to be about 2.8(1) eV with UV-vis diffuse reflectance spectrometry. The photocatalytic activity of AgAlO2 was characterized by photocatalytically decomposing the dye alizarin red (AR) under visible light irradiation, and AR could be decomposed about 70% under 2 h of visible light irradiation.

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Correlations between the scanning tunneling microscopy imaged configurations and the electronic structure on stepped Si(111)-( 7x7) surfaces

We have observed the dependence of the scanning tunneling microscopy (STM) imaged atom intensity within the (7x7) unit cell on stepped Si(111) as a function of the tunneling voltage. Pronounced differences from the corresponding atom intensity on the flat surface are observed for the contrast of atoms on the low versus the high side of the step and for the contrast between the faulted versus unfaulted subcells of the (7x7) structure. These differences can be accounted for by changes in the electronic structure within the (7x7) subcells adjacent to the step. Calculations of the local density of states and the STM images using a tight-binding method are in excellent agreement with the experimental results.

Journal Article↗

Charge-doped and heteroatom-substituted polysilane, poly(vinylenedisilanylene), and poly(butadienylenedisilanylene): electronic structures and band gaps.

The effects of charge-doping and boron and phosphorus substitution on the electronic structures and band gaps of polysilane, poly(vinylenedisilanylene), and poly(butadienylenedisilanylene) were theoretically investigated by using density functional theory and time-dependent density functional theory. Band gaps of polymers were estimated both by extrapolations from excitation energies of oligomers up to 30 units and by calculations with the periodic boundary condition. It was found that charge-doping in the polysilane decreases the band gap more significantly than B and P substitutions. However, Si-Si bonds are easily broken by charge-doping. In contrast, B and P substitutions exert little influence on the strength of Si-Si bonds. From natural bond orbital analysis, it was concluded that charge-doping and heteroatom substitution bring about a lowering of the band gap in sigma conjugated polysilanes because of strong electron-hole interactions. The introduction of longer pi conjugated moieties was found to reduce band gaps of sigma-pi conjugated chains. In contrast to the sigma conjugated polysilanes, bridged structures and a different distribution of polarons were found in cations of sigma-pi conjugated chains.

Journal Article↗

Recent advances in PC-Linux systems for electronic structure computations by optimized compilers and numerical libraries.

One of the most frequently used packages for electronic structure research, GAUSSIAN 98, is compiled on Linux systems with various hardware configurations, including AMD Athlon (with the "Thunderbird" core), AthlonMP, and AthlonXP (with the "Palomino" core) systems as well as the Intel Pentium 4 (with the "Willamette" core) machines. The default PGI FORTRAN compiler (pgf77) and the Intel FORTRAN compiler (ifc) are respectively employed with different architectural optimization options to compile GAUSSIAN 98 and test the performance improvement. In addition to the BLAS library included in revision A.11 of this package, the Automatically Tuned Linear Algebra Software (ATLAS) library is linked against the binary executables to improve the performance. Various Hartree-Fock, density-functional theories, and the MP2 calculations are done for benchmarking purposes. It is found that the combination of ifc with ATLAS library gives the best performance for GAUSSIAN 98 on all of these PC-Linux computers, including AMD and Intel CPUs. Even on AMD systems, the Intel FORTRAN compiler invariably produces binaries with better performance than pgf77. The enhancement provided by the ATLAS library is more significant for post-Hartree-Fock calculations. The performance on one single CPU is potentially as good as that on an Alpha 21264A workstation or an SGI supercomputer. The floating-point marks by SpecFP2000 have similar trends to the results of GAUSSIAN 98 package.

Journal Article↗

Electronic Structure and Properties of Trihalogen Cations X(3)(+) and XY(2)(+) (X, Y = F, Cl, Br, I).

Electronic structures, charge distributions, geometries, valence force constants, and vibrational frequencies of the homoatomic clusters F(3)(+), Cl(3)(+), Br(3)(+), and I(3)(+) and of the heteroatomic clusters ClF(2)(+), BrF(2)(+), IF(2)(+), BrCl(2)(+), ICl(2)(+), and IBr(2)(+) were determined. The self-consistent field approach extended by MP2-correlation energy or density-functional corrections was applied using various basis sets. It was found that d- and f-type polarization functions play a crucial role as in some other halogen compounds. The MP2 approach yields the most satisfactory results. The effect of the crystalline environment surrounding the Cl(3)(+), Br(3)(+), and I(3)(+) species is successfully simulated by a Madelung potential. Frequencies calculated in the crystal field are in reasonable agreement with the more reliable ones among the experimental results. Coupling force constants were determined. They are not consistent with some empirical rules. Bonding and charge distributions of the formally mixed-valence systems X(+)Y(2)(0) are discussed. X(+) behaves like a divalent chalcogen with high electronegativity. Each of the X(+)-Y bonds in XY(2)(+) is very similar to the bond in X-Y. We predict the experimentally unknown F(3)(+) to be stable in vacuum but not in the solid state. Structures and frequencies of XY(2)(+) species, which are as yet unknown, are also predicted.

Journal Article↗

Ground-state enthalpies: evaluation of electronic structure approaches with emphasis on the density functional method.

Ground-state enthalpies, calculated by various electronic structure methods, are compared with experimentally well-established values across a sizable data base of 577 molecules and 15 atoms. With the diversity of species and bonding types available in this compilation it is possible to detect deficiencies that may escape with smaller test sets. The present analysis relying on DAtEF (Data base optimized Atomic Enthalpies of Formation) yields error statistics which relate to reaction enthalpies among the species much more directly than extrapolations based on atomization enthalpies. The evaluation is applied to methods ranging from high level first principles wavefunction calculations to density functionals and to semiempirical approaches. It is found that computationally efficient and broadly applicable density functional methods with relatively small but adequate numerical basis sets can provide ground-state enthalpies within approximately 20 kJ/mol rms (approximately 4.8 kcal/mol). This must be considered an excellent result, as presently only the heaviest available methods appear to provide about a factor of 2 more accuracy as inferred from a subset of the data base used here.

Journal Article↗

Effect of pressure on the electronic structure of ferric hydroxamates and ferrichrome A.

The effect of pressure up to 175 kilobars on the electronic structure of three ferric hydroxamates and on ferrichrome A has been studied by optical absorption and Mössbauer resonance. The ferric ion was reduced to ferrous ion with pressure, as has been previously observed for various compounds. For the hydroxamates, the amount of reduction correlated very well with the location and shift of the metal-to-ligand charge transfer peak. This is entirely consistent with a previously presented theory. The results for ferrichrome A did not fit quantitatively into the series. Since the shape of the potential well is almost certainly different for this compound, this result is not surprising.

Journal Article↗

Electronic structures of RTe2 (R = La,Ce): a clue to the pressure-induced superconductivity in CeTe1.82.

Electronic structures of RTe2 (R=La,Ce) have been investigated by using the local spin density approximation (LSDA) and the LSDA + U (U: on-site Coulomb interaction) band methods. Both LaTe2 and CeTe2 show the very similar Fermi surface nesting features along the [100] direction, which drive the charge-density wave (CDW) instability in the Te(1) sheets. The contribution near E(F) from Ce 4f states is negligible in agreement with the measured ARPES spectra. In the semimetallic CDW-distorted RTe2, both Te vacancy and pressure induce the charge transfer from Te(1) 5p to R 5d states, producing the enhanced density of states at E(F). We suggest that these increased self-doped Te(1) 5p hole carriers are responsible for the pressure-induced superconductivity in nonstoichiometric CeTe1.82.

Journal Article↗

Electronic structure and spectra of linkage isomers of bis(bipyridine)(1,2-dihydroxy-9,10-anthraquinonato)ruthenium(ii) and their redox series.

Linkage isomers of bis(bipyridine)(1,2-dihydroxy-9,10-anthraquinonato)ruthenium(II), 1,2- and 1,9-coordinated complexes, and several of their oxidation products have been prepared chemically and/or electrochemically. For the 1,2-coordinated complex, the one- and two-electron oxidized species have been characterized, and for the 1,9-coordinated complex, the one-electron oxidized species has been characterized. The rich redox activity of these complexes leads to ambiguity in assessing the electronic structure. This paper reports EPR spectra of odd-electron species and detailed analyses of electronic spectra and structure of the complexes, based on INDO molecular orbital calculations. Results of calculations on the related 1-hydroxyanthraquinone complex and the free ligands,1,2-dihydroxy-9,10-anthraquinone (alizarin) and 1-hydroxyanthraquinone, are also briefly discussed.

Journal Article↗

Deposits of neuronal ceroid-lipofuscinosis in transitional structures--electron microscopic study.

Deposits of neuronal ceroid-lipofuscinosis in two cases were studied using the electron microscopy. The structure most frequently observed in both cases was a curvilinear body containing fingerprint patterns. Other structures, such as the granular pattern, zebra body-like structure and vacuole, were also observed less frequently. A loose pattern, which had an intermediate curvature between the fingerprint pattern and curvilinear body, was found for the first time. They might play an important role on the morphogenesis in the deposit of neuronal ceroid-lipofuscinosis.

Adult↗