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PubMed1992

Effects of compact volume and chain stiffness on the conformations of native proteins.

An investigation of the statistical properties of the native conformations of proteins, observed from crystal structures, is reported. Protein conformations were analyzed in terms of a bond vector correlation function and molecular volume. It was observed that, while the volume of a protein structure varies nearly linearly with the number of residues, the bond vector correlation function exhibits a universal feature for all sizes of proteins. To interpret the nature of the bond vector correlation function of native protein structures quantitatively, Monte Carlo simulations of realistic polypeptide chains of specific but arbitrary amino acid sequence were carried out. The molecule was constrained in an ellipsoidal volume determined by its chain length, and conformations with unacceptable nonbonded contacts between different amino acid residues were excluded. The interactions within a terminally blocked single residue, which correlate two nearest-neighbor peptide groups in a chain, were taken into account by an energetically biased sampling of its phi-psi space. The simulated chain correlation functions were found to be in good agreement with those of the crystal structures of beta-sheet-type and mixed-type (alpha+beta) proteins of similar length. On the basis of these calculations, it is concluded that the observed conformations of these native proteins may arise from two basic factors: the compactness of structures under hydrophobic interactions and the intrinsic stiffness of polypeptide chains due to the interactions within each terminally blocked residue.

Biophysical Phenomena↗
PubMed2004

Anomalous diffusivity and electric conductivity for low concentration electrolytes in nanopores.

We apply equilibrium and nonequilibrium molecular dynamics simulations to study the dynamic properties of electrolytes in nanopores. The realistic primitive model and the restrictive primitive model widely used in the statistical mechanics of liquid-state theory are applied to model the electrolytes. The electrolytic ions are immersed in water, treated in this work as either a dielectric continuum ignoring the size of solvent molecules or a macroscopic dielectric continuum (polar property) plus neutral soft spheres, and the aqueous electrolyte is put in a confined space. To simulate a condition mimicking closely processes of practical interest and yet maintaining the simulation computationally manageable, we consider an infinitely long and uncharged cylindrical tube. The equilibrium property of the self-diffusion coefficient D and the nonequilibrium property of electric conductivity sigma are computed in terms of electrolyte concentration, particle size, and cylindrical pore radius. The simulation results for the continuum solvent restrictive primitive model and continuum solvent primitive model show normal behavior for D versus pore radius R at ionic concentration 0.1M -i.e., D decreases with decreasing R -display an R independence of D at a certain threshold concentration and undergo an anomalous increase in D with reducing R at a lower value 0.025 M. The mechanism of the anomaly at the ionic concentration 0.025 M was sought for and interpreted in this work to arise from the energetic and entropic factors. Our simulated data of sigma at this same concentration follow the same trend as D. To delve further into the transport properties, we perform simulation studies for the discrete solvent primitive model and make a detailed analysis of the characteristic of the ion radial density functions. Comparison of the latter functions with those in the continuum solvent primitive model sheds light on the simulated diffusion coefficient within the context of discrete solvent primitive model which is about two orders of magnitude less. This difference in D is naturally attributed to the solvent effect. Similar disparities were reported by others for the discrete and continuum restrictive primitive models.

Journal Article↗
PubMed1964

Bacteria under simulated Martian conditions.

The behavior of organisms in simulated Martian conditions is of great importance to exobiology for two reasons: (1) Because of the extreme environment of Mars, the likelihood of contamination of the planet by earth organisms is considered slight by some scientists. To date, there has been little evidence to contradict this supposition. Such evidence is presented. (2) The selection and adaptation of earth bacteria to Martian conditions is potentially significant in understanding Martian life, if it exists, and may be helpful in designing life-detection techniques and devices. Of course, simulation attempts, based on current knowledge of the Mars environment, may be far from the actual conditions, and extrapolations made from such situations of no real significance. However, generalizations can be made and cautious interpretation of the results of those experiments seems well worth reporting. A new technique for simulation of known parameters of the Martian environment is discussed along with possible biological implications. The response of bacteria to such simulation is demonstrated in terms of survival and growth, showing that certain bacteria will not only survive, but grow during simulated Martian freeze-thaw cycling if water is present. Ways are demonstrated in which water can be present on Mars although not detectable with current technology. Plans for future experimentation are discussed.

Enterobacter aerogenes↗
PubMed2001

[Prevention of altitude decompression sickness during simulation of egress from the cabin of space vehicle with hypobaric artificial atmosphere].

Based on the proposed semiempiric nomograms, the study was aimed at selection and investigation of normoxic N2-O2 hypobaric atmosphere (HA) at 93-73 kPa, and evaluation of effectiveness of the gas mixture against the altitude decompression sickness (ADS) during 6-hr simulation of extravehicular activities at 37 kPa without prebreathing. Subjects were 22 healthy males from 20 to 50 yr. old. In all, 115 experiments were performed. Twenty-four hours in HA at 93 kPa and subsequent transition to 37 kPa led up to development of ADS symptoms by one subject in one of 27 experiments (3.7%), and emergence of venous gas bubbles (USI) with the intensity of 2, 70, and 19 points by the Spenser scale in 9 experiments (33.3%). Lower HA pressures (86 kPa, 80 kPa and 73 kPa) did not give rise to ADS though the occurrence of venous GB distinctly tended downward (30.6%, 14.3% and 11.8%) and so did the intensity of their entry into the pulmonary circulation (2, 40, 18 points; 1, 80, 19 points, and 2, 00, 15 points, respectively). Minimal ADS risk was observed in HA at 80 kPa and 73 kPa and did not reach 4% at the confidence level of 95%.

Adult↗
PubMed2000

[Mechanisms of volume regulation under the effect of spaceflight factors].

Studied was the significance of the volume regulating system of the human body for adaptive readjustment of the water-electrolyte homeostasis to changed position, immersion, and microgravity. Experiments were made to investigate volume regulation and associated events and their sequence as during simulation studies (bed rest, immersion, tilting, g-loads), so in Salyut-7 and Mir missions from 7 to 438 days of length. Established was a distinct relationship between the central venous pressure and hydration state of the body, and determined were quantitative parameters of circulating blood migration along the body axis during HDT and hypovolemia. The experiments revealed interdependence of g-tolerance and the way hypohydration had been triggered by, the mechanism of which was also explored. Investigations of human early adaptation to space flight allowed development of an approach to the hydration control (pharmacological hypohydration) with the purpose to minimize discomfort and to improve human performance at the beginning of space mission.

Adaptation, Physiological↗
PubMed1992

Survival of microorganisms in smectite clays: implications for Martian exobiology.

Manned exploration of Mars may result in the contamination of that planet with terrestrial microbes, a situation requiring assessment of the survival potential of possible contaminating organisms. In this study, the survival of Bacillius subtilis, Azotobacter chroococcum, and the enteric bacteriophage MS2 was examined in clays representing terrestrial (Wyoming type montmorillonite) or Martian (Fe(3+)-montmorillonite) soils exposed to terrestrial and Martian environmental conditions of temperature and atmospheric pressure and composition, but not to UV flux or oxidizing conditions. Survival of bacteria was determined by standard plate counts and biochemical and physiological measurements over 112 days. Extractable lipid phosphate was used to measure microbial biomass, and the rate of 14C-acetate incorporation into microbial lipids was used to determine physiological activity. MS2 survival was assayed by plaque counts. Both bacterial types survived terrestrial or Martian conditions in Wyoming montmorillonite better than Martian conditions in Fe(3+)-montmorillonite. Decreased survival may have been caused by the lower pH of the Fe(3+)-montmorillonite compared to Wyoming montmorillonite. MS2 survived simulated Mars conditions better than the terrestrial environment, likely due to stabilization of the virus caused by the cold and dry conditions of the simulated Martian environment. The survival of MS2 in the simulated Martian environment is the first published indication that viruses may be able to survive in Martian type soils. This work may have implications for planetary protection for future Mars missions.

Azotobacter↗
PubMed1980

Bioinstrumentation for evaluation of workload in payload specialists: results of ASSESS II.

ASSESS II (Airborne Science/Spacelab Experiments System Simulation) was a cooperative NASA-ESA project which consisted of a detailed simulation of Spacelab operations using the NASA Ames Research Center CV-990 aircraft laboratory. The Medical Experiment reported on in this paper was part of the complex payload consisting of 11 different experiments. Its general purpose was to develop a technology, possibly flown on board of Spacelab, and enabling the assessment of workload through evaluating changes of circadian rhythmicity, sleep disturbances and episodical or cumulative stress. As parameters the following variables were measured: Rectal temperature, ECG, sleep-EEG and -EOG, the urinary excretion of hormones and electrolytes. The results revealed evidence that a Spacelab environment, as simulated in ASSESS II, will lead to internal dissociation of circadian rhythms, to sleep disturbances and to highly stressful working conditions. Altogether these effects will impose considerable workload upon Payload Specialists. It is suggested that an intensive pre-mission system simulation will reduce these impairments to a reasonable degree. The bioinstrumentation applied in this experiment proved to be a practical and reliable tool in assessing the objectives of the study.

Adrenal Cortex Hormones↗
PubMed1990

Deformation of crowns during cementation.

Deformation of crowns during cementation was investigated by a simple loading system of defined crowns with silicone fluids as cements. Deformation of the crowns was measured by long stain gauges that encircled the cervical margins. Die spacing was simulated by etching the die. Venting was simulated by removing a small screw. Deformation of the crowns was decreased by decreasing the viscosity of fluid, increasing the thickness of the crowns, and venting. Etching the die decreased the seating times of the crowns, but did not alter the level of deformation. Terminal cementation with zinc phosphate cement confirmed the presence of crown deformation during cementation. The results have consequences for bonded and all-ceramic crowns, and explain several clinical phenomena. It is suggested that low viscosity cements, low seating forces, and die spacing be used to decrease the deformation of crowns during seating. The importance of passive fitting of the crown to the tooth is stressed.

Acid Etching, Dental↗
PubMed1989

Telerobotics and orbital laboratories: an end-to-end analysis and demonstration.

A preliminary analysis of the United States Laboratory (USL) module of the International Space Station has been completed. A major conclusion was that one of the most limited resources within the USL will be crew time. A laboratory robot would alleviate these constraints, improve safety, and reduce operational costs. A laboratory experiment manipulator system (LEMS) is proposed, made up of an on-board mobile manipulator and a computer-assisted operator control station. The on-board manipulator concept was tested with an Intelledex 660 industrial robot. Operator joystick command capability and delayed video feedback were added to simulate a Space Station Teleoperation system. The implementation of a unique predictive display was chosen for further evaluation because of its promise as a partial solution to the classical problem of robot remote control in the presence of time delay. The incorporation of various correction factors to calibrate the robot predictor model, including geometric distortion and spherical aberration caused by the video optics, is described.

Calibration↗
PubMed1997

Microgravity tissue engineering.

Tissue engineering studies were done using isolated cells, three-dimensional polymer scaffolds, and rotating bioreactors operated under conditions of simulated microgravity. In particular, vessel rotation speed was adjusted such that 10 mm diameter x 2 mm thick cell-polymer constructs were cultivated in a state of continuous free-fall. Feasibility was demonstrated for two different cell types: cartilage and heart. Conditions of simulated microgravity promoted the formation of cartilaginous constructs consisting of round cells, collagen and glycosaminoglycan (GAG), and cardiac tissue constructs consisting of elongated cells that contracted spontaneously and synchronously. Potential advantages of using a simulated microgravity environment for tissue engineering were demonstrated by comparing the compositions of cartilaginous constructs grown under four different in vitro culture conditions: simulated microgravity in rotating bioreactors, solid body rotation in rotating bioreactors, turbulent mixing in spinner flasks, and orbital mixing in petri dishes. Constructs grown in simulated microgravity contained the highest fractions of total regenerated tissue (as a percent of construct dry weight) and of GAG, the component required for cartilage to withstand compressive force.

Animals↗
PubMed1994

[System analysis of social motivation III: An estimation study of security and arousal regulation in adolescence].

An experiment using a simulated spaceflight scenario was applied to 32 adolescent subjects of both sexes in order to investigate human security and arousal regulation. In adolescence, these motivational systems play a key role in achieving two reorientations: the detachment from primary caregivers and the upcoming interest in strangers, which eventually establishes a new and mature form of attachment. Based on a control model proposed in an earlier article of this series, a parameter estimation was performed which allowed for a satisfactory simulation of the actual flight behavior of most subjects. A psychologically plausible interpretation of the parameters was possible. In particular, the results obtained indicate a gender specific differentiation in the development of both motivational systems during adolescence.

Acclimatization↗
PubMed1995

Studies in the search for life on Mars.

The ability of living organisms to survive extraterrestrial conditions has implications for the origins of life in the solar system. We have therefore studied the survival of viruses, bacteria, yeast, and fungi under simulated Martian conditions. The environment on Mars was simulated by low temperature, proton irradiation, ultraviolet irradiation, and simulated Martian atmosphere (CO2 95.46%, N2 2.7%, water vapor 0.03%) in a special cryostat. After exposure to these conditions, tobacco mosaic virus and spores of Bacillus, Aspergillus, Clostridium, and some species of coccus showed significant survival.

Aspergillus niger↗
PubMed1998

[Analysis and toxicological evaluation of hazardous gases in sealed cabin].

82 volatile organic compounds (VOCs) of eight organic sorts and 3 target inorganic compounds in a sealed cabin that simulating the flying spaceship were identified and quantified for 5 d, the law of hazardous gas concentration variation was discussed, and the atmosphere toxicology was evaluated preliminarily. It provides a basis for detecting gas compounds and evaluating the atmosphere toxicology in the spaceship.

Air Pollutants↗
PubMed1965

Response of microorganisms to a simulated Martian environment.

A study was undertaken to determine whether terrestrial microorganisms can survive in a simulated Martian environment. The ultimate objective is to establish whether earth organisms can contaminate Mars. In addition, any demonstration of survival and growth in a simulated Martian environment will provide information relating to the biology of Mars. In the experimental design, exhaustive consideration was given to the duplication of the known and the theoretical environmental parameters of Mars. These included composition of the soil and the atmosphere, barometric pressure, moisture content, solar radiation, and diurnal temperature extremes. Based upon these considerations, a simulated Martian summer environment was defined and used in the experiments. One group of microorganisms was selected from culture collections on the basis of their known characteristics. The other group was made of microorganisms isolated from soils. The soil samples were obtained from the Antarctic, from New Mexico, and California deserts, and from the Colorado tundra. The studies showed that a number of microorganisms can survive the simulated Martian environment. However, no substantial growth under such conditions could be demonstrated. The ability of microorganisms to form spores as a mechanism for survival will be discussed. Also, experiments utilizing augmented environments to establish minimum environmental conditions which will permit growth will be described.

Atmosphere↗
PubMed1997

Cardiovascular and hormonal changes induced by a simulation of a lunar mission.

BACKGROUND: This is the first simulation of a 14-d lunar mission including 6 d on the Moon. HYPOTHESIS: We hypothesized that a lunar gravity simulation in the middle of a head-down tilt (HDT) might result in some reversal of body fluid/hormonal responses, and influence cardiovascular deconditioning. METHODS: Six men (28 +/- 2.5 yr) were placed in bed rest (BR): in (HDT) (-6 degrees) to simulate microgravity during the travel (two 4-d periods), and in head-up tilt (HUT) (+10 degrees) (6-d period) to simulate lunar gravity (1/6 g). Muscular exercise was performed during the HUT period to simulate 6 h of lunar EVA. Heart rate variability (HRV) and hormonal responses were studied. RESULTS: An orthostatic arterial hypotension was observed after the BR (tilt test) in 4 of the 6 subjects. Plasma volume measured at D14 decreased by -11.1% (vs. D-3, sitting position). A decrease in atrial natriuretic peptide (26 +/- 3.5 pg.ml-1 (D14) vs. 37.9 +/- 3.5 pg.ml-1 (D-3, sitting) and an increase in plasma renin activity (198 +/- 9.2 mg.L-1.min-1 (D14) vs. 71 +/- 9.2 mg.L-1.min-1 (D-3, sitting) were observed during the BR, more pronounced in HUT at 7:00 p.m. Sympathetic-parasympathetic balance (HRV) at rest showed a decrease in parasympathetic indicator and an increase in sympathetic indicator in BR (p < 0.05), without differences within HDT and HUT periods. CONCLUSION: These changes were mostly similar to those reported in spaceflights, and HDT. Although the exposure to 1/6 g with exercise modified some hormonal and body fluid responses, this partial gravity simulation was not sufficient to prevent the decrease in orthostatic tolerance observed here as well as after Apollo lunar missions.

Adult↗
PubMed2005

Hydrothermal simulation experiments as a tool for studies of the origin of life on Earth and other terrestrial planets: a review.

The potential of life's origin in submarine hydrothermal systems has been evaluated by a number of investigators by conducting high temperature-high pressure experiments involving organic compounds. In the majority of these experiments little attention has been paid to the importance of constraining important parameters, such as the pH and the redox state of the system. This is particularly revealed in the apparent difficulties in interpreting experimental data from hydrothermal organic synthesis and stability studies. However, in those cases where common mineral assemblages have been used in an attempt to buffer the pH and redox conditions to geologically and geochemically realistic values, theoretical and experimental data seem to converge. The use of mineral buffer assemblages provides a convenient way by which to constrain the experimental conditions. Studies at high temperatures and pressure in the laboratory have revealed a number of reactions that proceed rapidly in hydrothermal fluids, including the Strecker synthesis of amino acids. In other cases, the verification of postulated abiotic reaction mechanisms has not been possible, at least for large molecules such as large fatty acids and hydrocarbons. This includes the Fischer-Tropsch synthesis reaction. High temperature-high pressure experimental methods have been developed and used successfully for a long time in, for example, mineral solubility studies under hydrothermal conditions. By taking advantage of this experimental experience new and, at times, unexpected directions can be taken in bioorganic geochemistry, one being, for instance, primitive two-dimensional information coding. This article critically reviews some of the organic synthesis and stability experiments that have been conducted under simulated submarine hydrothermal conditions. We also discuss some of the theoretical and practical considerations that apply to hydrothermal laboratory studies of organic molecules related to the origin of life on Earth and probably also to the other terrestrial planets.

Buffers↗
PubMed2004

Primary diffuse leptomeningeal sarcoma with rhabdomyoblastic differentiation. A case report and immunohistochemical study.

Primary meningeal neoplasias are rare, and their diffuse growth within the subarachnoid space may simulate inflammatory processes or metastatic neoplastic dissemination. We report here the case of a boy with an 18-day history of fever and progressive neurological deterioration. While in the hospital, the patient showed neurological deterioration and did not respond to antituberculosis treatment. His cerebrospinal fluid (CSF) cytology disclosed an elevated white blood cell count accompanied by a mildly elevated protein level and a slightly decreased glucose level. The child died, and pathology revealed that his meningeal process was a sarcoma. The immunophenotype of the neoplastic cells showed expression of a sarcomeric actin marker, characterizing rhabdomyoblastic differentiation of the cells that occupied the subarachnoid space and invaded superficially the encephalon. Rhabdomyoblastic differentiation in leptomeningeal diffuse primary sarcoma (LDPS) is an aspect rarely observed in this malignant meningeal neoplasia, with few reported cases. The present case is the first reported in the Portuguese literature and the fifth reported in the English literature.

Autopsy↗
PubMedDate not supplied

Fatty acid composition of plasma lipids and erythrocyte membranes during simulated extravehicular activity.

Ten subjects (from 27 to 41 years) have been participated in 32 experiments. They were decompressed from ground level to 40-35 kPa in altitude chamber when breathed 100% oxygen by mask and performed repeated cycles of exercises (3.0 Kcal/min). The intervals between decompressions were 3-5 days. Plasma lipid and erythrocyte membrane fatty acid composition was evaluated in the fasting venous blood before and immediately after hypobaric exposure. There were 7 cases decompression sickness (DCS). Venous gas bubbles (GB) were detected in 27 cases (84.4%). Any significant changes in the fatty acid composition of erythrocyte membranes and plasma didn't practically induce after the first decompression. However, by the beginning of the second decompression the total lipid level in erythrocyte membranes decreased from 54.6 mg% to 40.4 mg% in group with DCS symptoms and from 51.2 mg% to 35.2 mg% (p<0.05) without DCS symptoms. In group with DCS symptoms a tendency to increased level of saturated fatty acids in erythrocyte membranes (16:0, 18:0), the level of the polyunsaturated linoleic fatty acid (18:2) and arachidonic acid (20:4) tended to be decreased by the beginning of the second decompression. Insignificant changes in blood plasma fatty acid composition was observed in both groups. The obtained biochemical data that indicated the simulated extravehicular activity (EVA) condition is accompanied by the certain changes in the blood lipid metabolism, structural and functional state of erythrocyte membranes, which are reversible. The most pronounced changes are found in subjects with DCS symptoms.

Adult↗