Search PubMed⌕ Search

SEARCH · Search PubMed

Results for “SHRIMP”

Search indexed PubMed citations on genomics, clinical trials, systematic reviews and public health. Explore titles, authors and supplied subject terms, then open the PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 415 records · Page 23Linked to original sources
PubMedDate not supplied

Determination and confirmation of identities of flumequine and nalidixic, oxolinic, and piromidic acids in salmon and shrimp.

A previously published liquid chromatographic (LC) method for determining residues of flumequine (FLU) and nalidixic (NAL), oxolinic (OXO), and piromidic (PIR) acids in catfish tissue was applied to salmon and shrimp muscle. Identities of all 4 residues in salmon and shrimp were confirmed by gas chromatography/mass spectrometry (GC/MS). The tissue is homogenized with acetone, the acetone extract is defatted with hexane, and the quinolones are extracted into chloroform. The extract is further purified by first partitioning into base and then back-extracting from a solution acidified to pH 6.0. Analytes are determined by LC with simultaneous UV and fluorescence detection. Muscle tissue was fortified with each quinolone at 5, 10, 20, 40, and 80 ng/g. Average recoveries and relative standard deviations (RSDs) for salmon, which represent an average of the 5 levels for each analyte, ranged from 75.9 to 90.8% and from 2.25 to 6.40%, respectively. Average recoveries and RSDs for shrimp ranged from 81.3 to 91.2% and from 7.34 to 10.7%, respectively. Identities of OXO, FLU, NAL, and PIR were confirmed in extracts of salmon and shrimp tissue fortified at 10 ng/g by determination of decarboxylated quinolones by GC/MS. Four diagnostic ions were monitored for OXO, FLU, and PIR, and 5 ions were monitored for NAL. All ion relative abundances were within 10% of those calculated for standard decarboxylated quinolones. Optimum conditions for decarboxylation and GC/MS confirmation are given.

Animals↗
PubMed1996

[International trade in living penaeid shrimp between countries in the Pacific and the Atlantic areas and in Europe].

The tremendous development of penaeid shrimp culture across the world over the past twenty years has led to international trade in eggs, larvae and spawners of the best shrimp species for aquaculture. Trade has involved, in particular, the following species: -Penaeus japonicus from Japan to Europe, the Pacific Islands and South America -P. monodon from South-East Asia to almost all tropical countries -P. vannamei and P. stylirostris from countries along the Pacific coast of South and central America to the United States of America, the islands of the South Pacific, countries along the Atlantic coast of the Americas and certain countries in Africa. In the 1980s, research conducted by American and French teams enabled the breeding of stocks of spawners in captivity. This resulted in the establishment of lines of captive broodstock outside natural areas of distribution, and the development of new breeding farms in previously unproductive regions. Trade related to movements of these species is facilitated by the absence of legislation in most countries; even when such legislation does exist, it is not always applied. These practices have led to the rapid development of world shrimp production, but have also contributed to the dissemination of pathogens. In recent years, the occurrence of serious epizootics - occasioning heavy losses world-wide - has led to a more cautious approach involving trade of post-larvae obtained from captive broodstock in which thorough control measures have been implemented for known diseases. Trade in wild shrimp will probably be abandoned progressively, to avoid the risk of introducing new pathogens. The main challenges for research in the near future are the development of diagnostic tools, to enable continuous control of captive broodstock, and the selection of strains which are resistant to the principal pathogens affecting these species.

Animals↗
PubMed1996

Pigmentation of Pacific white shrimp (Penaeus vannamei) using Aztec marigold (Tagetes erecta) extracts as the carotenoid source.

Pacific white shrimp were fed diets containing natural pigments from Aztec marigold (Tagetes erecta) petals extracts (esterified and saponified). The pigmenting effect of these carotenoids was compared with a carotenoid-free control diet and a synthetic astaxanthin (Roche Carophyll Pink) supplemented diet. It was found that after 14 days of feeding, the shrimp showed that the saponified marigold extract and the high concentration esterified marigold extract supplemented diets produced a better pigmentation effect (between 50-70%) in the exoskeleton than the astaxanthin, the low concentration esterified marigold extract and the basal diets, the latter diets being non-significantly different among themselves. However, during the same 14 day period, non-significantly different results were observed in the carotenoid content of the shrimp abdominal muscle when fed with all diets except the low concentration esterified marigold extract diet that showed a significantly lower value than the saponified marigold extract diet. These results indicate that the main carotenoid sources in Tagetes erecta, namely lutein and zeaxanthin, are possibly metabolized into astaxanthin and deposited by the Pacific white shrimp.

Animal Feed↗
PubMed1998

Yolk protein synthesis in the riceland tadpole shrimp, Triops longicaudatus, measured by in vitro incorporation of 3H-leucine.

Investigation of reproductive control within the tadpole shrimp, Triops longicaudatus, required the isolation and characterization of the yolk protein (vitellin, Vn). To this end, tadpole shrimp were cultured in environmental chambers (29 degrees C-22 degrees C, with 14:10 light:dark cycle). Desiccated cysts hatched in 2-3 days after inundation. The tadpole shrimp began egg deposition 7 to 8 days after hatching and exhibited a mean growth rate of 1.85 +/- 0.24 mm/day. It was observed that 4-day-old shrimp had visible eggs in their ovaries. In addition, Vn was isolated and characterized from reproductive animals, resolving as one protein on native PAGE, and possessing a molecular weight (MW) of 376,000 +/- 2,900 as determined by FPLC. Examination by SDS-PAGE revealed that Vn is composed of a single molecule with a MW of 214,000 +/- 2,000. Methyl farnesoate (MF), a crustacean compound whose role in reproduction is still being elucidated and is structurally similar to juvenile hormone III (JH III) was incubated with ovarian explants. These explants were incubated for 24 h at room temperature in EAGLE's medium adjusted to Van Harreveld's solution in six concentrations (1 pM to 100 nM) of MF and JH III. Methyl farnesoate and JH III had no direct in vitro effect on yolk protein synthesis (P < or = 0.545 and P < or = 0.815, respectively).

Animals↗
PubMed2026

From dysbiosis to resilience: Microbiome engineering for sustainable shrimp aquaculture.

The intensification of shrimp aquaculture has increased exposure to disease, environmental perturbations, and antimicrobial pressure, making microbial stability increasingly relevant to sustainable production. Microbiome stability-encompassing resistance to disturbance and resilience of functional recovery-provides an ecological framework for understanding how shrimp and culture-environment microbial communities respond to intensive farming. This review examines the transition from microbial homeostasis to dysbiosis and evaluates how microbiome engineering could redirect disrupted communities towards resilient states. Evidence is integrated across the intestine, hepatopancreas, rearing water, sediment and biofloc to assess how host genetics, ontogeny, diet, culture conditions, antibiotics and pollutants shape microbiome assembly and destabilization. Disease-associated changes in acute hepatopancreatic necrosis disease, white faeces syndrome, Enterocytozoon hepatopenaei infection, and white spot syndrome virus infection are critically evaluated, with explicit separation of associations, pathogen-induced dysbiosis, and community-level causality. Established and emerging interventions-including probiotics, prebiotics, synbiotics, functional diets, biofloc management, phages, postbiotics, microbiota transplantation and synthetic microbial communities-are assessed according to their capacity to modify microbial function, persistence and recovery rather than taxonomic change alone. We further examine how multi-omics, microbiome-informed breeding, and environmental monitoring could support biomarker development, predictive decision support and context-specific intervention. We argue that progress requires a shift from taxonomic description to function-guided engineering, from endpoint comparisons to direct measurement of resilience, and from laboratory efficacy to reproducible farm-scale validation. Overall, microbiome management may contribute to more disease-resilient and sustainable shrimp production, provided that its effectiveness can be validated under commercial farming conditions.

Dysbiosis↗
PubMed2026

Microbial decomposer diversity and metabolic function during the decomposition of brine shrimp carcasses in a saline lake.

BACKGROUND: Decomposition of brine shrimp carcasses has a crucial role in carbon cycling of saline lakes, yet the microbial dynamics remain poorly understood. RESULTS: Here we integrated metagenomics, metatranscriptomics, culturomics, metabolomics, and microcosm experiments to investigate microbial community succession and function during brine shrimp (Artemia sp.) carcass decomposition in Barkol Lake, a hypersaline lake in China. A total of 149 metagenome-assembled genomes (MAGs) and 77 pure culture genomes were recovered across 33 phyla, with 72.12% genomes representing species-level novel lineages. Our results reveal diverse bacterial and archaeal taxa, including novel lineages from CG03, T1Sed10-126 and rare archaeal taxa (Asgardarchaeota, Thermoplasmatota, Nanoarchaeota, and Halobacteriota), involved in degradation of biomacromolecules-proteins, carbohydrates, lipids, and nucleic acids-via extracellular hydrolysis, nutrient transport, and intracellular catabolism. These taxa exhibit substrate preferences, rapidly responding to the breakdown of polysaccharides and proteins, followed by lipids and nucleic acids. Hydrolyzed oligomers are further oxidized by various microbes through fermentation, sulfate reduction, and methanogenesis via metabolic handoffs. Additionally, viral auxiliary metabolic genes (AMGs) further enhance microbial host functions, contributing to key ecological processes such as carbon cycling and stress response. A temporally structured microbial decomposer network (MDN) was observed, driving mineralization cascades from fermentation to sulfate reduction and methanogenesis. CONCLUSIONS: This study reveals microbial metabolic handoffs and virus-mediated modulation as critical mechanisms for organic matter turnover, expanding the known diversity and function of decomposers in saline ecosystems. Our findings offer new insights into biogeochemical processes in saline lakes and highlight a synergistic microbial decomposer network involving bacteria, archaea, and viruses that collectively drive nutrient cycling during brine shrimp carcass decomposition. Video Abstract.

Animals↗
PubMed2001

GTPase stimulation in shrimp Ras(Q(61)K) with geranylgeranyl pyrophosphate but not mammalian GAP.

BALB/3T3 cells were transformed by transfection with DNA encoding the mutated ras(Q(61)K) from shrimp Penaeus japonicus (Huang et al., 2000). The GTPase-activating protein (GAP) in the cytosol fraction was significantly expressed and degraded, compared to untransformed cells on the western blot. To understand this in more detail, the interaction of the bacterially expressed shrimp Ras (S-Ras) with GAP was investigated using GAP purified from mouse brains. SDS-polyacrylamide gel electrophoresis revealed the monomers of the purified GAP to have a relative mass of 65,000. Since the purified GAP was bound to the Ras conjugated affinity sepharose column with high affinity and its GTP hydolysis activity upon binding with tubulin was suppressed, the purified enzyme was concluded to be neurofibromin-like. The purified GAP enhanced the intrinsic GTPase activity of the S-Ras, to convert it into the inactive GDP-bound form, in agreement with findings for GTP-bound K(B)-Ras in vitro. To compare the effects between isoprenoids and GAP on the GTP-hydrolysis of Ras, we applied the GTP-locked shrimp mutant S-Ras(Q(61)K) and GTP-locked rat mutant K(B)-ras(Q(61)K). Radioassay studies showed that geranylgeranyl pyrophosphate at microg level catalyzed the GTP hydrolysis of S-Ras(Q(61)K) and K(B)-ras(Q(61)K) competently, but not farnesyl pyrophosphate or the purified GAP. The present study provides the view that the geranylgeranyl pyrophosphate at carboxyl terminal CAAX assists GTP hydrolysis to Ras proteins probably in a manner similar to the substrate assisted catalysis in GTPase mechanism.

Animals↗
PubMed1982

Toxicity of Gonyaulax tamarensis var. excavata cells to the brine shrimp Artemia salina L.

Brine shrimp (Artemia salina L.) were exposed to concentrations of live Gonyaulax tamarensis var. excavata cells ranging from 0 to 13,400 cells/ml in unialgal culture. The shrimp ingested the dinoflagellate cells and an LD50 determination was made. The shrimp had a 72-hr LD50 of 1258 G. tamarensis cells/ml, which was calculated to correspond to 73,385 micrograms/kg of body weight. This figure can be compared with an oral LD50 value of 2100 micrograms/kg for the mouse. Since it requires one-tenth as much toxin to kill a mouse (LD50 approximately 0.04 mg) as to kill an Artemia (LD50 approximately 0.4 mg), the whole cell G. tamarensis bioassay is a poor alternative to the current mouse assay.

Animals↗
PubMed2006

Characterization of vitellogenin in the shrimp Metapenaeus ensis: expression studies and hormonal regulation of MeVg1 transcription in vitro.

During gonad maturation, female shrimp accumulate the major egg yolk protein vitellin (Vn) in premolt stage, and the process of molting and reproduction is synchronized. Using a polyclonal anti-Vn antibody, immunopositive signals could be detected in the ovary and among the proteins secreted by the hepatopancreas by Western blot. In the ovary, Vn immunoreactivity was located in the posterior lobe. Hepatopancreas proteins with sizes identical to ovary vitellogenin (Vg) subunits (i.e., 78 and 157 kDa) were immunoreactive to the Vn antibody and these proteins included amino acid sequences identical to parts of the MeVg1 precursor. A major 7.8 kb MeVg1 transcript, was detected in the ovary. In the hepatopancreas, the transcripts were primarily small (<2.3 kb) and while the 7.8 kb transcript which constitutes <50% of the total Vg mRNA. MeVg1 transcript could be detected in the hepatopancreas of juvenile females with a maximum level during late intermolt and early premolt. To study the effect of different hormones on expression of MeVg1, explant cultures of hepatopancreas and ovary were developed. Although several hormones (20-hydroxyecdysone, estradiol (ES), farnesoic acid (FA), juvenile hormone (JH) III, methyl farnesoate, and progesterone (PG)) apparently stimulated MeVg1 gene expression, only FA consistently stimulated MeVg1 expression by the hepatopancreas explants, while both FA and 20-hydroxyecdysone were stimulated ovarian explants. In summary, (i) Vg transcripts can be detected in both reproductive and nonreproductive females; (ii) the presence of large quantities of smaller Vg transcripts and the absence of a large Vg precursor from the hepatopancreas suggests that smaller MeVg1 transcripts provide an important contribution to Vg synthesis in shrimp. Our results suggest that there is differential processing of the MeVg1 precursor in the ovary and hepatopancreas of shrimp.

Alternative Splicing↗
PubMed2007

Characterization of a vasa-like gene from the pacific white shrimp Litopenaeus vannamei and its expression during oogenesis.

The vasa gene encodes an ATP-dependent RNA helicase belonging to the DEAD-box family that, in many organisms, is specifically expressed in germline cells throughout the life cycle. In this study we first cloned Pacific white shrimp (Litopenaeus vannamei) partial cDNAs of two members of the DEAD-box family, one belonging to the vasa subfamily (Lv-Vasa) and the other to the PL10 subfamily (Lv-PL10). Examination of their spatial expression pattern in adult tissues revealed that Lv-Vasa is restricted to the gonads, whereas Lv-PL10 is found in gonads as well as in somatic tissues. Next, we cloned the full-length shrimp vasa cDNA and found that Lv-Vasa encoded a protein with a DEAD-like helicase domain followed by a helicase superfamily C-terminal domain. In addition, Lv-Vasa encoded N-terminal three repeats of the C2HC-type zinc finger domain, a motif encoded by vasa genes of several crustaceans and several other invertebrate organisms. In situ hybridization of ovarian sections showed that the Lv-Vasa transcript is localized to the cytoplasm of the oocyte throughout oogenesis. The abundance of Lv-Vasa mRNA in mature oocytes suggests a maternal contribution for the developing embryo. It is demonstrated that the vasa homolog from L. vannamei is a gonad specific germline cell marker that could be exploited to enhance our understanding of developmental and reproductive processes in the germline of this economically important shrimp.

Amino Acid Sequence↗
PubMed1997

Purification, characterization, and hydrodynamic properties of arginine kinase from gulf shrimp (Penaeus aztecus).

Arginine kinase from the tail muscle of the Gulf shrimp (Penaeus aztecus) was purified to apparent homogeneity, using a rapid, high-yield method. The protein exhibits a molecular weight of 40 kDa according to the methods of gel filtration and gel electrophoresis in sodium dodecyl sulfate, also indicating that arginine kinase from shrimp is a monomer. The amino acid content of arginine kinase from shrimp is similar to arginine kinases from several species and to creatine kinase from rabbit muscle. Arginine kinase derivatized at the reactive sulfhydryl with 2-(4'-(iodoacetamido)anilino)naphthalene-6-sulfonic acid exhibits significant changes in fluorescence anisotropy only in the presence of the guanidino substrate and the so-called "dead-end complex" containing arginine + MgADP. Several compounds structurally similar to arginine, e.g., ornithine do not interact with arginine kinase, suggesting a narrow specificity for substrate binding. The most suitable description of the decay of the fluorescence of arginine kinase derivatized with 5-[(((acetyl)-amino)ethyl)amino]naphthalene-1-sulfonate (AEDANS-AK), from among discrete and distributed models, is a triple exponential discrete decay. The presence of the dead-end complex only marginally increases the rate of decay, but significantly shifts the magnitude of the preexponentials (amplitudes) between the two major decay components. One interpretation of these results is that multiple conformational isomers may occur, in which the relative concentrations are dependent upon the presence of the dead-end complex. Measurement of the time-dependent anisotropy decay of AEDANS-AK reveals a two-term decay law with rotational correlation times of 0.88 and 15.2 ns. The slower component is close to the theoretical value of 16.7 ns for an isotropic rotator of the molecular mass of arginine kinase. This finding suggests that the overall conformation of arginine kinase may differ considerably from the prolate ellipsoidal subunits of the functionally analogous creatine kinase.

Amino Acids↗
PubMed1997

Correlation between overall pesticide effects monitored by shrimp mortality test and change in macrobenthic fauna in a river.

The relationship between change in benthic fauna in the Suna River and shrimp mortality in the river water samples (test was conducted two times per week from May to September) was investigated to assess the insecticide impact on the benthic community. The river was selected because pesticide application had been restricted for a long time in the upper reaches, while aerial insecticide spraying had been done four times on paddy fields in the lower reaches in summer. Species richness and density of benthos were high at the stations in the upper reaches. High shrimp mortality was measured in the water samples collected from a downstream station during the pesticide spraying period, from late July to late August. Species richness and density of benthos markedly decreased at the stations in the lower reaches in that period. However, several species of chironomids, Cheumatopsyche (Trichoptera), which demonstrated tremendous insecticide resistance, and Baetis sahoensis (Ephemeroptera), which has a high recovery potential, were not affected, even in the insecticide spraying period. The benthic fauna in the lower reaches tended to recover from autumn to spring, although not sufficiently. It is considered that the temporal recovery of the benthic community was brought about through recruitment from the benthic community in the 5-km upper reaches. A close correlation was found between the high mortality of shrimp in the water samples and the deterioration in the benthic fauna in this river which was contaminated with insecticides during the summer.

Animals↗
PubMed2002

Effects of pesticides on DNA and protein of shrimp larvae Litopenaeus stylirostris of the California Gulf.

Recently, diverse pathologies and massive mortalities have been presented in shrimp hatcheries located along the California Gulf; therefore, toxic responses of shrimp larvae were used as biomarkers of pesticide pollution, because in this region intensive agriculture is practiced. Shrimp larvae were exposed to DDT, azinphosmethyl, permethrine, parathion, chlorpyrifos, malathion, endosulfan, and carbaryl, in order to determine LC50, DNA adducts and/or breaks, and total protein in larvae. The results indicate reductions in protein and DNA in larvae exposed to these pesticides, and in those exposed to DDT, breaks and/or adducts were registered. It is possible that pesticide pollution is a cause of these problems, because reduction in protein indicates a decrease in larvae growth rate and DNA breaks or adducts have been related to pathologies and carcinogenesis in many aquatic organisms.

Animals↗
PubMed2001

Heavy metals affect the circulating haemocyte number in the shrimp Palaemon elegans.

Environmental contamination by heavy metals produced by either anthropogenic or natural activities represents a threat to many species of aquatic animals worldwide. This study investigates the effect of short-term (96 h) exposure to dissolved heavy metals on the number of circulating haemocytes in the shrimp, Palaemon elegans (Rathke). Changes in haemocyte counts were determined in relation to time of exposure and with heavy metal concentration, relating the results to toxicity. It was found that immersion in artificial seawater containing Hg, Cd, Cu, Cr, Zn or Pb caused a decrease in the haemocyte count during the first 8 h exposure, although the haemocyte number returned to the initial (time 0) levels over the following 16 h immersion. In each case, the decrease in circulating haemocyte count induced by these metals was significantly different from the controls. The greatest decrease in haemocyte numbers (haemocytopenia) was induced by Pb, followed, in descending order, by Zn, Hg, Cr, Cu and Cd. The lethal level of haemocytopenia for the shrimps, defined as the number of haemocytes ml remaining in moribund animals (i.e. threshold of mortality) was found to be significantly lower than the levels tolerated by surviving shrimps (i.e. the limit of survival). The percentage of haemocytes remaining in the circulation at the threshold of mortality as a function of the number at time 0 was 56.6 +/- 8.8%. By contrast, the equivalent value for the threshold of survival was 63.7 +/- 12.4%. Importantly, the percentage decrease in haemocyte counts tolerated by P. elegans appears to vary with the metal. Animals treated with Pb or Zn survived with a lower number of circulating haemocytes than animals exposed to the other heavy metals.

Animals↗
PubMed2002

The roles of haemocytes and the lymphoid organ in the clearance of injected Vibrio bacteria in Penaeus monodon shrimp.

In order to study the reaction of Penaeus monodon haemocytes, live Vibrio anguillarum bacteria were injected and the shrimp were periodically sampled. Immuno-double staining analysis with specific antisera against the haemocyte granules and bacteria showed that large numbers of haemocytes encapsulated the bacteria at the site of injection. A rapid decrease of live circulating bacteria was detected in the haemolymph. Bacterial clearance in the haemolymph was induced by humoral factors, as observed by agglutinated bacteria, and followed by uptake in different places in the body. Bacteria mainly accumulated in the lymphoid organ (LO), where they, or their degradation products, could be detected for at least 7 days after injection. The LO consists of folded tubules with a central haemal lumen and a wall, layered with cells. The haemolymph, including the antigens, seemed to migrate from the central tubular lumen through the wall, where the bacteria are arrested and their degradation is started. Electron microscopy of the LO revealed the presence of many phagocytic cells that morphologically resemble small-granular haemocytes. It is proposed that haemocytes settle in the tubule walls before they phagocytose. Immunostaining suggests that many of the haemocytes degranulate in the LO, producing a layer of fibrous material in the outer tubule wall. These findings might contribute to the reduced haemocyte concentration in the haemolymph of diseased animals or following injection of foreign material. It is proposed that the LO is a filter for virtually all foreign material encountered in the haemolymph. Observations from the present study are similar to clearance mechanisms in the hepatic haemolymph vessel in most decapod crustaceans that do not possess a LO. The experimental shrimp appeared to contain many LO spheroids, where bacterial antigens were finally observed as well. It is proposed that the spheroids have a degradation function for both bacterial and viral material, and that their presence is primarily related to the history of the infectious burden of the shrimp.

Animals↗
PubMed1997

Virulence of Metarhizium anisopliae to Embryos of the Grass Shrimp Palaemonetes pugio

Experiments were performed in which developing embryos of the grass shrimp, Palaemonetes pugio, were exposed to conidiospores of the insect pathogenic fungus, Metarhizium anisopliae. Responses were variable, with significant (P </= 0.05) adverse effects observed in five of six experiments conducted. Dead embryos and larvae with visible growth of M. anisopliae were observed in all experiments. Growth of M. anisopliae was occasionally observed on embryos and larvae prior to death. Delayed hatch was also observed. In one of the initial experiments, an increase in N-acetyl-beta-d-glucosaminidase, EC 3.2.1.30 (NAGase), activity accompanied by an increase in virulence toward shrimp embryos was observed. Additional experiments in which conidiospores were produced on homogenized caterpillars suggested a positive correlation between virulence of M. anisopliae to P. pugio embryos and activity of spore-associated NAGase. Under these laboratory conditions M. anisopliae was an invasive pathogen of grass shrimp embryos, and the growth substrates on which their spores develop can influence the severity of effects on these nontarget arthropods.

Journal Article↗
PubMed2001

Molecular phylogeny of western Atlantic Farfantepenaeus and Litopenaeus shrimp based on mitochondrial 16S partial sequences.

Partial sequences for the 16S rRNA mitochondrial gene were obtained from 10 penaeid shrimp species: Farfantepenaeus paulensis, F. brasiliensis, F. subtilis, F. duorarum, F. aztecus, Litopenaeus schmitti, L. setiferus, and Xiphopenaeus kroyeri from the western Atlantic and L. vannamei and L. stylirostris from the eastern Pacific. Sequences were also obtained from an undescribed morphotype of pink shrimp (morphotype II) usually identified as F. subtilis. The phylogeny resulting from the 16S partial sequences showed that these species form two well-supported monophyletic clades consistent with the two genera proposed in a recent systematic review of the suborder Dendrobranchiata. This contrasted with conclusions drawn from recent molecular phylogenetic work on penaeid shrimps based on partial sequences of the mitochondrial COI region that failed to support recent revisions of the Dendrobranchiata based on morphological analysis. Consistent differences observed in the sequences for morphotype II, coupled with previous allozyme data, support the conclusion that this is a previously undescribed species of Farfantepenaeus.

Animals↗
PubMed2001

Evidence for three major clades within the snapping shrimp genus Alpheus inferred from nuclear and mitochondrial gene sequence data.

The snapping shrimp genus Alpheus is among the most diverse of caridean shrimps, and analyses of taxa separated by the Isthmus of Panama have been used to estimate rates of molecular evolution. Although seven morphological groups have been informally suggested, no formal phylogenetic analysis of the genus has been previously attempted. Here we infer the phylogenetic relationships within Alpheus using sequence data from two nuclear genes, glucose-6-phosphate isomerase and elongation factor-1alpha, and from the mitochondrial gene cytochrome oxidase I. Three major clades corresponding to previously noted morphological features were identified. Discrepancies between earlier informal morphological groupings and molecular analyses largely consisted of species whose morphologies were not entirely typical of the group to which they had been assigned. The traditional placements of shrimp with highly sessile lifestyles and consequently simplified morphologies were also not supported by molecular analyses. Phylogenies for Alpheus suggest that specialized ecological requirements (e.g., symbiotic associations and estuarine habitats) and modified claw morphologies have evolved independently several times. These new analyses also support the sister species status of transisthmian pairs analyzed previously, although very similar pairs were not always resolved with the more slowly evolving nuclear loci. In addition, six new cryptic species were identified in the course of these studies plus a seventh whose status remains to be determined.

Animals↗