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PubMed1990

Genome analysis of Legionella ssp. by orthogonal field alternation gel electrophoresis (OFAGE).

Various Legionella isolates from different sources and origins were analysed by orthogonal field alternation gel electrophoresis of NotI cleaved genomic DNA. The genome of L. pneumophila Philadelphia I, the original isolate of the epidemics in 1976, exhibits only five NotI fragments. Two virulent derivatives, derived from L. pneumophila Philadelphia I, which were obtained by prolonged passage on artificial culture media, did not differ from their isogenic virulent strain according the NotI fragment pattern. By summing the lengths of the NotI fragments, the genome size of L. pneumophila Philadelphia I was calculated as approximately 3.9 Mb. Environmental L. pneumophila strains exhibited different NotI patterns, as did Legionella strains not belonging to the species pneumophila. The usefulness of DNA long range mapping of Legionella ssp. with NotI for epidemiology and evaluation of their evolutionary relationships is discussed.

Biological Evolution↗
PubMed2006

Climate-controlled Holocene occupation in the Sahara: motor of Africa's evolution.

Radiocarbon data from 150 archaeological excavations in the now hyper-arid Eastern Sahara of Egypt, Sudan, Libya, and Chad reveal close links between climatic variations and prehistoric occupation during the past 12,000 years. Synoptic multiple-indicator views for major time slices demonstrate the transition from initial settlement after the sudden onset of humid conditions at 8500 B.C.E. to the exodus resulting from gradual desiccation since 5300 B.C.E. Southward shifting of the desert margin helped trigger the emergence of pharaonic civilization along the Nile, influenced the spread of pastoralism throughout the continent, and affects sub-Saharan Africa to the present day.

Agriculture↗
PubMed1977

Divergence of baboon endogenous type C virogenes in primates: genomic viral RNA in molecular hybridization experiments.

RNA purified from two related RNA tumor viruses, one isolated from a baboon, Papio anubis, and the second from cultured blood leukocytes of a patient with acute myelogenous leukemia, was labeled with 125I and hybridized to DNA from different primates. RNA from both viruses showed maximum sequence homology with genes in baboons and little homology with genes of humans. The results confirm earlier suggestions that both viruses originated by transcription of baboon virogenes, and that one was transmitted to humans in nature. Hybridization of the viral RNA to cell DNA followed complicated kinetic patterns, indicating the presence of both repeated and infrequent virogene elements. This conclusion was verified in experiments using varied DNA:RNA ratios. It is proposed that virogenes, though composed of genes repeated 10 times or more, consist of some sequences more preferentially conserved than others. The non-uniformity of virogene sequence conservation limits the use of viral probes in studies concerning certain aspects of virogene evolution.

Animals↗
PubMed2004

Is there geographical variation in human handedness?

Right- and left-handed individuals are present in all cultures. However, while it is known that handedness is a heritable trait, little is known about how handedness varies between populations-and without this knowledge, the significance of the left/right polymorphism is hard to interpret. We reviewed the literature to assess the extent of geographical variation of throwing or hammering handedness. These two tasks were chosen because they are present in all known cultures (unlike, for example, writing), and make sense within the context of several adaptive theories on the origin of laterality, or maintenance of handedness polymorphism, which state that tool or weapon manipulation are pivotal. A total of 81 samples were found with primary data on throwing or hammering handedness, spanning 14 countries and concerning more than 1,214,000 individuals studied between 1922 and 1998. A global logistic regression was performed to assess the significance of the country of the study, controlling for several potentially confounding variables (date of the study, sex and age of individuals). Country always had a significant effect, consistent with substantial geographical variation of throwing and hammering handedness. Curiously, left-handedness frequency estimates for a given country were not always consistent across datasets, perhaps due to missing variables, such as educational level or socio-economic status. Results are discussed in the context of the evolution of handedness and the significance of the current polymorphism.

Biological Evolution↗
PubMed1987

Historical processes and biological structure of the populations. Example from the Island of Korcula.

The importance of geographical distance as a determining factor of the population's biological and socio-cultural structure was studied on the island of Korcula, Yugoslavia. Migrational kinship coefficients, biological and linguistic distances were analysed in respect to isolation by distance, using Malecot's model. The fit of the model is highly significant for migrational kinship, linguistic, anthropometrical and physiological distances, while for morphometrical distances of metacarpal bones and dermatoglyphic distances, it is not adequate. The major conclusions reached through this analysis are in concordance with the known historical events in the entire region.

Anthropology, Physical↗
PubMed1984

Cultural and biological evolutionary processes: gene-culture disequilibrium.

The dynamics of the interaction between genetic and cultural transmission are studied by using a simple two-phenotype diallelic haploid genetic system. The value of an individual's phenotype is determined by cultural transmission from its parent or by a randomly chosen member of the parental population. In the absence of phenotypic selection, polymorphic equilibria of the gene and trait frequencies are obtained. The correlation between genotype and phenotype within or between populations depends on a quantity formally similar to linkage disequilibrium and is determined by a relationship among transmission coefficients analogous to a coefficient of epistasis. With natural selection on the phenotype and no mutation, only degenerate transmission rules allow polymorphic equilibria to be attained, and, in general, the genotype allowing the strongest transmission of the favored phenotype is successful.

Biological Evolution↗
PubMedDate not supplied

Antiquity of postreproductive life: are there modern impacts on hunter-gatherer postreproductive life spans?

Female postreproductive life is a striking feature of human life history and there have been several recent attempts to account for its evolution. But archaeologists estimate that in the past, few individuals lived many postreproductive years. Is postreproductive life a phenotypic outcome of modern conditions, needing no evolutionary account? This article assesses effects of the modern world on hunter-gatherer adult mortality, with special reference to the Hadza. Evidence suggests that such effects are not sufficient to deny the existence of substantial life expectancy at the end of the childbearing career. Data from contemporary hunter-gatherers (Ache, !Kung, Hadza) match longevity extrapolated from regressions of lifespan on body and brain weight. Twenty or so vigorous years between the end of reproduction and the onset of significant senescence does require an explanation.

Aged↗
PubMed2005

"15 Minutes Of Fame": exploring the temporal dimension of middle pleistocene lithic technology.

This paper addresses the spatial and temporal dimensions of knapping routines through analysis of refit data. Many reconstructions of lithic tool production utilising refit data concentrate upon 'how' a piece of stone is taken apart, and less often consider the 'when' and 'where'. Lower Palaeolithic artefacts are frequently viewed as belonging to simplistic technical systems in which tools were made and used as and when required, showing little temporal depth. Modern knappers can replicate the components of the Acheulean toolkit, such as a biface, in around 15 minutes. The predominant use of local raw materials and the relatively simple reduction sequences observed on many Middle Pleistocene sites has given rise to the view that Acheulean hominins possessed an immediate approach to technology, and that artefacts did not stay in the technological system very long. In contrast, other researchers have stressed the increased planning abilities of hominins in relation to their stone tool-making and using routines. Increased planning abilities are often cited as a diagnostic feature of modern human cognition. As such, tracing the emergence of these abilities is an important avenue of research in human evolution. The aim of this paper is to investigate how the process of lithic production was organised on several Middle Pleistocene sites in northwest Europe. By comparing refitting sequences from several primary context sites, the different stages of reduction present at these locations can be reconstructed. Since refit sets record the work carried out in one place and time by an individual, they can be used to reconstruct the spatial and temporal dimension of these past technological activities. The analysis shows fragmentation of reduction sequences was a common occurrence, suggesting a more dynamic approach to tool-making and using activities than has previously been recognised. The analysis provides a description of these artefact dynamics, and discusses the underlying cognitive mechanisms of this behaviour.

Animals↗
PubMed2001

The evolutionary dynamics of the lexical matrix.

The lexical matrix is an integral part of the human language system. It provides the link between word form and word meaning. A simple lexical matrix is also at the center of any animal communication system, where it defines the associations between form and meaning of animal signals. We study the evolution and population dynamics of the lexical matrix. We assume that children learn the lexical matrix of their parents. This learning process is subject to mistakes: (i) children may not acquire all lexical items of their parents (incomplete learning); and (ii) children might acquire associations between word forms and word meanings that differ from their parents' lexical items (incorrect learning). We derive an analytic framework that deals with incomplete learning. We calculate the maximum error rate that is compatible with a population maintaining a coherent lexical matrix of a given size. We calculate the equilibrium distribution of the number of lexical items known to individuals. Our analytic investigations are supplemented by numerical simulations that describe both incomplete and incorrect learning, and other extensions.

Adult↗
PubMed2004

Experimental evidence for sympatric ecological diversification due to frequency-dependent competition in Escherichia coli.

We investigate adaptive diversification in experimental Escherichia coli populations grown in serial batch cultures on a mixture of glucose and acetate. All 12 experimental lines were started from the same genetically uniform ancestral strain but became highly polymorphic for colony size after 1000 generations. Five populations were clearly dimorphic and thus serve as a model for an adaptive lineage split. We analyzed the ecological basis for this dimorphism by studying bacterial growth curves. All strains exhibit diauxie, that is, sequential growth on the two resources. Thus, they exhibit phenotypic plasticity, using mostly glucose when glucose is abundant, then switching to acetate when glucose concentration is low. However, the coexisting strains differ in their diauxie pattern, with one cluster in the dimorphic populations growing better in the glucose phase, and the other cluster having a much shorter lag when switching to the acetate phase. Using invasion experiments, we show that the dimorphism of these two ecological types is maintained by frequency-dependent selection. Using a mathematical model for the adaptive dynamics of diauxie behavior, we show that evolutionary branching in diauxie behavior is a plausible theoretical scenario. Our results support the hypothesis that, in our experiments, adaptive diversification from a genetically uniform ancestor occurred due to frequency-dependent ecological interactions. Our results have implications for understanding the evolution of cross-feeding polymorphism in microorganisms, as well as adaptive speciation due to frequency-dependent selection on phenotypic plasticity.

Adaptation, Physiological↗
PubMed1999

[Age and aging as incomplete architecture of human ontogenesis].

The focus is on the basic biological-genetic and social-cultural architecture of human development across the life span. The starting point is the frame provided by past evolutionary forces. A first conclusion is that for modern times and the relative brevity of the time windows involved in modernity, further change in human functioning is primarily dependent on the evolution of new cultural forms of knowledge rather than evolution-based changes in the human genome. A second conclusion concerns the general architecture of the life course. Three governing lifespan developmental principles coexist. First, because long-term evolutionary selection evince a negative age correlation, genome-based plasticity and biological potential decrease with age. Second, for growth aspects of human development to extend further into the life span, culture-based resources are required at ever increasing levels. Third, because of age-related losses in biological plasticity and negative effects associated with some principles of learning (e.g., negative transfer), the efficiency of culture is reduced as lifespan development unfolds. Joint application of these principles suggests that the lifespan architecture becomes more and more incomplete with age. Three examples are given to illustrate the implications of the lifespan architecture outlined. The first is a general theory of development involving the orchestration of three component processes and their age-related dynamics: Selection, optimization, and compensation. The second example is theory and research on lifespan intelligence that distinguishes between the biology-based mechanics and culture-based pragmatics of intelligence and specifies distinct age gradients for the two categories of intellectual functioning. The third example considers the goal of evolving a positive biological and cultural scenario for the last phase of life (fourth age). Because of the general lifespan architecture outlined, this objective becomes increasingly difficult to achieve. In fact, for other reasons (such as the obsolescence created by rapid technological change) the 21st century can be considered as the century of the permanently incomplete mind. The advent of intervention genetics creates a new scenario with promise and despair. Promise because of the possibility to complete the biological-genetic architecture of the life course through a priori and a posteriori genetic engineering, despair because of a new schism created by the risk of dissociation of the time course of genetic intervention and cultural evolution. For the first time in history, humankind is truly in charge of it's biocultural "natural" destiny.

Age Factors↗
PubMed1994

Modulation of cardiac myocyte phenotype in vitro by the composition and orientation of the extracellular matrix.

Cellular phenotype is the result of a dynamic interaction between a cell's intrinsic genetic program and the morphogenetic signals that serve to modulate the extent to which that program is expressed. In the present study we have examined how morphogenetic information might be stored in the extracellular matrix (ECM) and communicated to the neonatal heart cell (NHC) by the cardiac alpha 1 beta 1 integrin molecule. A thin film of type I collagen (T1C) was prepared with a defined orientation. This was achieved by applying T1C to the peripheral edge of a 100 mm culture dish. The T1C was then drawn across the surface of the dish in a continuous stroke with a sterile cell scraper and allowed to polymerize. When NHCs were cultured on this substrate, they spread, as a population, along a common axis in parallel with the gel lattice and expressed an in vivo-like phenotype. Individual NHCs displayed an elongated, rod-like shape and disclosed parallel arrays of myofibrils. These phenotypic characteristics were maintained for at least 4 weeks in primary culture. The evolution of this tissue-like organizational pattern was dependent upon specific interactions between the NHCs and the collagen-based matrix that were mediated by the cardiac alpha 1 beta 1 integrin complex. This conclusion was supported by a variety of experimental results. Altering the tertiary structure of the matrix or blocking the extracellular domains of either the cardiac alpha 1 or beta 1 integrin chain inhibited the expression of the tissue-like pattern of organization. Neither cell-to-cell contact or contractile function were necessary to induce the formation of the rod-like cell shape. However, beating activity was necessary for the assembly of a well-differentiated myofibrillar apparatus. These data suggest that the cardiac alpha 1 beta 1 integrin complex serves to detect and transduce phenotypic information stored within the tertiary structure of the surrounding matrix.

Animals↗
PubMed2006

A new route to the evolution of cooperation.

The Prisoner's Dilemma (PD) constitutes a widely used metaphor to investigate problems related to the evolution of cooperation. Whenever evolution takes place in well-mixed populations engaged in single rounds of the PD, cooperators cannot resist invasion by defectors, a feature, which is somewhat alleviated whenever populations are spatially distributed. In both cases the populations are characterized by a homogeneous pattern of connectivity, in which every individual is equivalent, sharing the same number of neighbours. Recently, compelling evidence has been accumulated on the strong heterogeneous nature of the network of contacts between individuals in populations. Here we describe the networks of contacts in terms of graphs and show that heterogeneity provides a new mechanism for cooperation to survive. Specifically, we show that cooperators are capable of exploring the heterogeneity of the population structure to become evolutionary competitive. As a result, cooperation becomes the dominating trait in scale-free networks of contacts in which the few highly connected individuals are directly inter-connected, in this way contributing to self-sustain cooperation.

Computer Simulation↗
PubMed2004

Evolution of marital structure in 20 Sardinian villages from 1800 to 1974.

This paper reports the data for endogamy, exogamy and consanguinity in 20 Sardinian villages from 1800 to 1974, divided into generational periods (25 years). The data are taken from the records of 48,262 marriages celebrated in the parishes of 20 Sardinian villages. The results for Spearman's rank correlation coefficient indicate significant positive correlations of endogamy with consanguinity (r(s) = 0.6551, percentage of consanguineous marriages; r(s) = 0.5477, Bernstein's alpha), with altitude (r(s) = 0.6386), with population size (r(s) = 0.2519), as well as a significant negative correlation of endogamy with time (r(s) = -0.4210). In addition, consanguinity shows a significant positive correlation with altitude (r(s) = 0.5717, percentage of consanguineous marriages; r(s) = 0.6295, Bernstein's alpha) and a significant negative correlation with time (r(s) = -0.2363, percentage of consanguineous marriages); the negative correlation between the mean level of consanguinity (alpha) and time is statistically not significant. In the single parishes, the levels of endogamy and consanguinity are generally higher in the mountain villages than in those situated in the hill and plain areas. Finally, it is hypothesized that, in the time period considered, the level of consanguinity and especially of endogamy were largely determined by isolation.

Consanguinity↗
PubMed2004

Race: scientific nonproblem, cultural quagmire.

The matter of biological differentiation among human beings has been a perennial concern of physical anthropologists, whose profession grew out of the monogenist/polygenist debates of the 18th century, and who periodically feel impelled to issue sonorous pronouncements on the subject. In spite of (or perhaps because of) the extensive and difficult cultural ramifications of the race issue, such pronouncements have usually presented the matter of race as one that requires extensive bioanthropological exegesis. In reality, however, race is the most banal of biological issues. Within any species, including Homo sapiens, two biological processes are possible: physical differentiation (as routinely occurs in small population isolates) and reintegration (should the resulting differentiated populations come together in the absence of any barrier to mating). The history of Homo sapiens reflects both of these processes: initial differentiation among small, scattered populations in the later part of the Pleistocene, and subsequent reintegration as the human population expanded and these populations came together once more. It is for this reason that, while certain modal physical types can be recognized on any urban street today (differentiation), it is impossible to recognize any clear boundaries between them (reintegration). All of this is perfectly unremarkable in evolutionary terms, and requires no special explanation. The complexities of the race issue are real, of course, and it is important that we come to terms with them; but they will not be resolved by biologists.

Anthropology↗
PubMedDate not supplied

The 'Fulcrum for Quality'. The physics of provider reform: six key variables to achieve 'MEDQIC'.

As health care providers move from a fee-for-service, revenue-driven system to total capitation, the need to focus on achieving the most efficient delivery of quality integrated care will be paramount to survival. The energy to survive a totally capitated reimbursement system will depend on the degree that a provider is able to evolve from a revenue-driven to a quality-driven organizational culture. This evolution is going to be very difficult for many health care providers who are committed to a managing money mentality rather than a managing quality mentality to achieve the "bottom line" and regard human resources as expendable and quality as unmeasureable rhetoric. The "Fulcrum for Quality" demonstrates how six key variables change when moving from a fee-for-service to a capitated reimbursement system: reimbursement methodology, utilization, operational expenses, information systems, management and communication. In a fee-for-service system, providers experience minimal restrictions on the revenue limits they could achieve. Consequently, inefficiencies and poor quality had little to do with a provider's ability to increase profits. Under a totally capitated system that limits revenue, providers will experience that quality and efficiencies directly affect profits. The "Fulcrum for Quality" discusses the transformation of the six key variables and the changes a medical practice manager will need to make in order to achieve the most efficient delivery of quality integrated care.

Capitation Fee↗
PubMed1991

Identification of adaptive changes in an evolving population of Escherichia coli: the role of changes with regulatory and highly pleiotropic effects.

A population of Escherichia coli initiated with a single clone developed extensive morphological and physiological polymorphism after being maintained for 773 generations in glucose-limited continuous culture. To understand the mechanisms of adaptation to this environment, total protein patterns of four adaptive clones and of the parent strains were examined by two-dimensional gel electrophoresis. Approximately 20% of the proteins (approximately 160 in absolute numbers) showed significantly different levels of expression in pairwise comparisons of parent and adapted clones. The extent of these changes points to the importance of mutations with regulatory and/or highly pleiotropic effects in the adaptive process. The four evolved clones all expressed fewer proteins than did the parent strain, supporting the hypothesis of energy conservation during evolutionary change. Forty-two proteins that could be assigned to known cellular functions were identified. The changes in some of them indicated that the evolved clones developed different adaptive mechanisms to glucose-limited environment. Changes were observed in the expression levels of proteins associated with translation, membrane composition, shock response, and active transport. A fraction of the changes could not be either explained or predicted from a consideration of the nature of the environment in which the clones evolved.

Adaptation, Biological↗
PubMed2002

Evolution of bacteriophage in continuous culture: a model system to test antiviral gene therapies for the emergence of phage escape mutants.

The emergence of viral escape mutants is usually a highly undesirable phenomenon. This phenomenon is frequently observed in antiviral drug applications for the treatment of viral infections and can undermine long-term therapeutic success. Here, we propose a strategy for evaluating a given antiviral approach in terms of its potential to provoke the appearance of resistant virus mutants. By use of Q beta RNA phage as a model system, the effect of an antiviral gene therapy, i.e., a virus-specific repressor protein expressed by a recombinant Escherichia coli host, was studied over the course of more than 100 generations. In 13 experiments carried out in parallel, 12 phage populations became resistant and 1 became extinct. Sequence analysis revealed that only two distinct phage mutants emerged in the 12 surviving phage populations. For both escape mutants, sequence variations located in the repressor binding site of the viral genomic RNA, which decrease affinity for the repressor protein, conferred resistance to translational repression. The results clearly suggest the feasibility of the proposed strategy for the evaluation of antiviral approaches in terms of their potential to allow resistant mutants to appear. In addition, the strategy proved to be a valuable tool for observing virus-specific molecular targets under the impact of antiviral drugs.

Allolevivirus↗