Search PubMed⌕ Search

SEARCH · Search PubMed

Results for “temperate”

Search indexed PubMed citations on genomics, clinical trials, systematic reviews and public health. Explore titles, authors and supplied subject terms, then open the PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 379 records · Page 21Linked to original sources
PubMed2004

Mesoscale variability of vertical profiles of environmental radionuclides (40K, 226Ra, 210Pb and 137Cs) in temperate forest soils in Germany.

Vertical profiles of environmental radionuclides (40K, 226Ra, 210Pb and 137Cs) were investigated in several temperate forest soils in Germany to estimate heterogeneity of the soil horizon of interest. Absolute values of the activity concentrations of these nuclides varied to a large extent depending on the properties of individual forests as well as local geology. Several trends were generally observed independent of the location: (1) Activity concentrations of 40K increased with increasing soil density reflecting that most potassium is contained in mineral components of the soil. The variations in the 40K activity with depth may relate to biological activities in subsoil, such as root uptake of the nutrients. (2) Profiles of 226Ra with depth could be an indicator for evaluating soil heterogeneity within a horizon of interest. They are also useful to estimate anthropogenic 210Pb (210Pbexc) derived from the atmosphere via dry fallout or wet deposition. In several forests, there appeared surface enrichment of 210Pb down to a depth of approximately 10 cm, in which the 210Pb would have come from the atmosphere by combustion of fossil fuels. (3) Depth profiles of 137Cs were roughly divided into three types in which (a) the activity concentration decreased exponentially with soil depth, (b) small amounts of 137Cs existed only in the upper-most layer of the soil (0-5 cm) and (c) 137Cs disappeared at certain depths and appeared again at deeper portions of the soil. Consequences of bioturbation could be deduced from variability in vertical profiles of the environmental radionuclides. It is probable that a site showing an exponential decrease of the 137Cs activity with depth and also having a surface enrichment of 210Pb is not significantly influenced by bioturbation.

Climate↗
PubMed2004

Mercury dynamics of a temperate forested wetland.

Wetlands have been identified as important sites of mercury methylation in catchments, but the range of wetland types and their geographic distribution for which methylmercury fluxes are reported in the literature are limited. Linkages among wetland hydrology, total mercury and methylmercury concentrations and fluxes, and other water quality parameters were assessed in a temperate forested swamp in Southern Ontario, Canada. Two hydrogeomorphically distinct stream reaches within the wetland exhibited differences in wetland-stream hydrologic connectivity, which strongly influenced mercury dynamics. Total mercury flux from both reaches to the downstream was highest during flow conditions in which the wetland and stream were hydrologically connected. The wetland as a whole was a net sink for total mercury and a net source for methylmercury to the downstream system. Both total mercury and methylmercury concentrations were related to dissolved and particulate organic carbon in stream waters, but these relationships were dependent upon the sampling location and flow conditions. Throughout the wetland, methylmercury concentrations exhibited temporal relationships with sulfate concentrations. Further, despite short surface water residence times, periods of wetland and stream disconnect and high pH (approx. 8) in surface water, methylmercury fluxes from this wetland to the downstream were similar to those from more stagnant and acidic wetlands.

Climate↗
PubMed2005

Phosphatase activity in temperate pasture soils: Potential regulation of labile organic phosphorus turnover by phosphodiesterase activity.

Phosphatase enzymes regulate organic phosphorus (P) turnover in soil, but a clear understanding remains elusive. To investigate this, phosphomonoesterase and phosphodiesterase activities were determined by using para-nitrophenol (pNP) analogue substrates in a range of temperate pasture soils from England and Wales. Substrate-induced phosphatase activity ranged between 2.62 and 12.19 micromol pNP g-1 soil h-1 for phosphomonoesterase and between 0.25 and 2.24 micromol pNP g-1 soil h-1 for phosphodiesterase. Activities were correlated strongly with soil pH and labile organic P extracted in sodium bicarbonate, although the relationships differed markedly for the two enzymes. Acidic soils contained high phosphomonoesterase activity, low phosphodiesterase activity, and high concentrations of labile organic P, whereas the reverse was true in more neutral soils. As most of the organic P inputs to soil are phosphate diesters, it therefore seems likely that phosphodiesterase activity regulates labile organic P turnover in pasture soils. The low phosphodiesterase activity in acidic soils may be linked to the dominance of fungi or an effect of sorption on the enzyme. These results suggest that greater emphasis should be placed on understanding the role of phosphodiesterase activity in the cycling of soil organic P.

Agriculture↗
PubMed2006

Discovering the importance of lateral CO(2) transport from a temperate spruce forest.

Our study investigated the concentration of dissolved carbon at the point when water leaves the pedosphere and whether this amount represents a significant proportion of terrestrial carbon cycling. The investigations were carried out in a temperate forest catchment (Black Forest, Germany) over a period of 1 year. The annual export of dissolved C compounds (14.4 g C m(-2) year(-1)) was dominated by CO(2) (9.7 vs. 4.7 g C m(-2) year(-1) DOC). Even though the direct CO(2) degassing at the spring was inferior (0.4 kg C year(-1)), considerably lower CO(2) concentrations were measured 17 m downstream of the spring. This shows that a large proportion of dissolved CO(2) (93%) originating from the pedosphere is not captured anymore within a short distance from the spring. The measured lateral C-transport was in the same order of magnitude as reported for the net ecosystem exchange (NEE) observed for German spruce forests (-4 to -55 g C m(-2) year(-1)). Therefore, the results clearly demonstrated that the lateral transport of dissolved carbon can be a significant part of terrestrial carbon budgets and for this study site CO(2) was dominating this 'indirect' pathway. However, for generalisation, it is important to extend this investigation to other landscapes and climatic zones.

Carbon↗
PubMed2006

Accumulation of microcystins in various organs of the freshwater snail Sinotaia histrica and three fishes in a temperate lake, the eutrophic Lake Suwa, Japan.

So far, there has been only one study to examine microcystin (MC) contents in various organs of snails in a subtropical Chinese lake. In this study, tissue distribution and seasonal dynamics of MC-RR and -LR were investigated in various organs of a freshwater snail (Sinotaia histrica) in a temperate eutrophic lake, Lake Suwa, Japan. Accumulation of microcystins in some fish was also investigated. There was marked temporal variation in the MC content of various organs of the snail. The digestive tract had the highest MC content (mean 9.03 microg g(-1) DW and range 3.74-23.2 microg g(-1) DW), followed by the gonad (mean 6.90 microg g(-1) DW and range 0.07-22.7 microg g(-1) DW) and hepatopancreas (mean 5.38 microg g(-1) DW and range 1.08-8.79 microg g(-1) DW), whereas the foot had the least (mean 2.48 microg g(-1) DW and range 0.04-4.45 microg g(-1) DW). The disappearance of MC-LR in the hepatopancreas indicated that S. histrica is able to depurate MC-LR efficiently. MC-RR was detected in the muscle of three species of fish, with the highest content in Carassius auratus (79.4 microg kg(-1) BW). Because of substantial MC accumulation in these edible aquatic animals in Lake Suwa, it is recommended that regular monitoring of MCs should be undertaken in both cyanobacteria and aquatic animals.

Animals↗
PubMed2004

Complete genome sequence of the Lactococcus lactis temperate phage phiLC3: comparative analysis of phiLC3 and its relatives in lactococci and streptococci.

Complete genome sequencing of the P335 temperate Lactococcus lactis bacteriophage phiLC3 (32, 172 bp) revealed fifty-one open reading frames (ORFs). Four ORFs did not show any homology to other proteins in the database and twenty-one ORFs were assigned a putative biological function. phiLC3 contained a unique replication module and orf201 was identified as the putative replication initiator protein-encoding gene. phiLC3 was closely related to the L. lactis r1t phage (73% DNA identity). Similarity was also shared with other lactococcal P335 phages and the Streptococcus pyogenes prophages 370.3, 8232.4 and 315.5 over the non-structural genes and the genes involved in DNA packaging/phage morphogenesis, respectively. phiLC3 contained small homologous regions distributed among lactococcal phages suggesting that these regions might be involved in mediating genetic exchange. Two regions of 30 and 32 bp were conserved among the streptococcal and lactococcal r1t-like phages. These two regions, as well as other homologous regions, were located at mosaic borders and close to putative transcriptional terminators indicating that such regions together might attract recombination. The conserved regions found among lactococcal and streptococcal phages might be used for identification of phages/prophages/prophage remnants in their hosts.

Base Sequence↗
PubMed2005

Complete genomic sequence of the temperate bacteriophage PhiAT3 isolated from Lactobacillus casei ATCC 393.

The complete genomic sequence of a temperate bacteriophage PhiAT3 isolated from Lactobacillus (Lb.) casei ATCC 393 is reported. The phage consists of a linear DNA genome of 39,166 bp, an isometric head of 53 nm in diameter, and a flexible, noncontractile tail of approximately 200 nm in length. The number of potential open reading frames on the phage genome is 53. There are 15 unpaired nucleotides at both 5' ends of the PhiAT3 genome, indicating that the phage uses a cos-site for DNA packaging. The PhiAT3 genome was grouped into five distinct functional clusters: DNA packaging, morphogenesis, lysis, lysogenic/lytic switch, and replication. The amino acid sequences at the NH2-termini of some major proteins were determined. An in vivo integration assay for the PhiAT3 integrase (Int) protein in several lactobacilli was conducted by constructing an integration vector including PhiAT3 int and the attP (int-attP) region. It was found that PhiAT3 integrated at the tRNAArg gene locus of Lactobacillus rhamnosus HN 001, similar to that observed in its native host, Lb. casei ATCC 393.

Bacteriophages↗
PubMed2006

The ltp gene of temperate Streptococcus thermophilus phage TP-J34 confers superinfection exclusion to Streptococcus thermophilus and Lactococcus lactis.

The ltp gene, located within the lysogeny module of temperate Streptococcus thermophilus phage TP-J34, has been shown to be expressed in lysogenic strain S. thermophilus J34. It codes for a lipoprotein, as demonstrated by inhibition of cleavage of the signal sequence by globomycin. Exposure of Ltp on the surface of Lactococcus lactis protoplasts bearing a plasmid-encoded copy of ltp has been demonstrated by immunogold labeling and electron microscopy. Expression of ltp in prophage- and plasmid-cured S. thermophilus J34-6f interfered with TP-J34 infection. While plating efficiency was reduced by a factor of about 40 and lysis of strain J34-6f in liquid medium was delayed considerably, phage adsorption was not affected at all. Intracellular accumulation of phage DNA was shown to be inhibited by Ltp. This indicates interference of Ltp with infection at the stage of triggering DNA release and injection into the cell, indicating a role of Ltp in superinfection exclusion. Expression of ltp in L. lactis Bu2-60 showed that the same superinfection exclusion mechanism was strongly effective against phage P008, a member of the lactococcal 936 phage species: no plaque-formation was detectable with even 10(9) phage per ml applied, and lysis in liquid medium did not occur. In Lactococcus also, Ltp apparently inhibited phage DNA release and/or injection. Ltp appears to be a member of a family of small, secreted proteins with a 42 amino acids repeat structure encoded by genes of Gram-positive bacteria. Some of these homologous genes are part of the genomes of prophages.

Amino Acid Sequence↗
PubMed2004

Corticosterone suppresses cutaneous immune function in temperate but not tropical House Sparrows, Passer domesticus.

Levels of corticosterone (CORT), the primary avian stress hormone, tend to vary over space and time in passerines, but why this is so remains unclear. One reason may be differential need for immune defense. Typically, sustained high levels of CORT suppress immune activity in vertebrates. Thus, animals living where parasite threats are high might maintain low levels of CORT and mount weak CORT stress responses to ensure that their immune defenses are in a high state of readiness at all times. Here, we addressed this hypothesis by comparing CORT levels in two populations of House Sparrows (Passer domesticus), one from the tropics (Colon, Panama) where parasite threats are high and one from the North-temperate zone (New Jersey, USA) where they are lower. Indeed, we found that House Sparrows from Panama had lower baseline and stress-induced CORT levels than House Sparrows from New Jersey. To more directly test our hypothesis, we artificially elevated CORT (via implant) in both populations of birds, expecting that cutaneous immune activity (induced by phytohemagglutinin (PHA)) would be suppressed as it is in most vertebrates studied to date. Surprisingly, we found that CORT implants did not affect immune function in Panamanian sparrows, while immune function in (non-breeding) New Jersey sparrows was suppressed. This suggests that Panamanian House Sparrows may be immunologically insensitive to CORT, in addition to maintaining low baseline and stress-induced levels of this hormone. We propose that other animals living where disease threats are high may use CORT in a similar way.

Adaptation, Physiological↗
PubMed2004

The role of olfaction during mating in the southern temperate spiny lobster Jasus edwardsii.

Chemosensory communication may be crucial during mate choice and mating in the southern temperate spiny lobster Jasus edwardsii to ensure that females mate with large males capable of supplying adequate numbers of sperm during the short mating window. To clarify the role of pheromones during this process, three laboratory experiments were carried out. In an experiment where the output of urine, which contains sex-specific pheromones, from large and small catheterized males was switched, large post-molt females did not make a clear choice of mate. This indicates that while females distinguish among females, males, and juveniles using their chemosensory sense, they distinguish among males using visual and tactile senses in combination with olfaction. Further, two antennule-ablation experiments were carried out to determine if detection of pheromones by the antennules of females or males was critical for mate selection, courting, or mating. In both cases, we observed a (nonsignificant) trend of slightly delayed mating of treatment females. We found that disruption of female olfaction causes less impact on courtship or mating than ablation of male antennules which increased the variance in the length of the period between molting and mating and resulted in a systematic reduction in clutch size. This lesser impact of female ablation may be because females can still respond to their own internal cues about egg ripeness whereas males cannot. In J. edwardsii, unlike the American clawed lobster, Homarus americanus, one fully functional partner of either sex appears sufficient to initiate mating.

Animals↗
PubMed2004

Relationships of the temperate Australasian labrid fish tribe Odacini (Perciformes; Teleostei).

The labrid tribe Odacini comprises four genera and 12 species of fishes that inhabit shallow kelp forest and seagrass areas in temperate waters of Australia and New Zealand. Odacines are morphologically disparate, but share synapomorphies in fin structure and fusion of teeth into a beak-like oral jaw. A phylogenetic analysis of odacines was conducted to investigate their relationships to other labrid fishes, the relationships of species within the tribe, and the evolution of herbivory within the group. Fragments from two mitochondrial genes, 12S rDNA and 16S rDNA, and two nuclear genes, Tmo4C4 and RAG2, were sequenced for seven odacine species (representing all four genera), eight species representing the other major labrid lineages, and three outgroup species. Maximum likelihood and maximum parsimony analyses on the resulting 2338 bp of DNA sequence produced nearly identical topologies differing only in the placement of a clade containing the cheiline Cheilinus fasciatus and the scarine Cryptotomus roseus. The remaining clades received strong bootstrap support under maximum parsimony, and all clades in the maximum likelihood analysis received high bootstrap proportions and high posterior probabilities. The hypsigenyine labrid Choerodon anchorago formed the sister group to the odacines. Within the odacines, Odax cyanoallix+Odax pullus formed the sister to the remaining odacines, with Odax acroptilus, Odax cyanomelas, and Siphonognathus argyrophanes forming successively closer sister groups to the clade Haletta semifasciatus+Neoodax balteatus. Either herbivory evolved twice in the odacines, or herbivory evolved once with two reversions to carnivory. The latter hypothesis appears more likely in the light of odacine feeding biology.

Animals↗
PubMed2006

Range-wide phylogeography of a temperate lizard, the five-lined skink (Eumeces fasciatus).

We used mitochondrial DNA and microsatellite loci to examine the phylogeographic patterns of the most broadly distributed lizard in eastern North America, the five-lined skink (Eumeces fasciatus). We infer that longitudinal phylogeographic patterns in E. fasciatus are consistent with fragmentation due to refugial and post-glacial dynamics, but that deep divergences within the species imply historical fragmentation that predates the Pleistocene. The effect of multiple refugia is implied from our nested clade analyses, including a northern refugium in Wisconsin. Analysis of population structure using nuclear microsatellite data within the species suggests the importance of glacial dynamics in shaping more recent genetic structuring within one widely distributed lineage that ranges from the Mississippi River to the Atlantic Ocean in longitude and from southern Ontario to the Gulf of Mexico in latitude. Results shed light on the historical processes that have influenced current population structure of a temperate lizard, support the striking similarity of longitudinal phylogeographic structure across many herpetofaunal species in eastern North America, and illustrate the utility of employing multiple markers in phylogeographic studies.

Animals↗
PubMed2003

Sequence analysis of the genome of the temperate Yersinia enterocolitica phage PY54.

The temperate Yersinia phage PY54 belongs to the unusual group of phages that replicate as linear plasmids with covalently closed ends. Besides Escherichia coli phage N15, PY54 is the only member of this group to be identified. We have determined the complete sequence (46,339 bp) of the PY54 genome. Bioinformatic analyses revealed 67 open reading frames (ORFs) with good coding potential located on both DNA strands. The comparison of the deduced PY54 gene products with known proteins encoded by other phages and bacteria along with functional studies have enabled us to assign the possible functions of 25 ORFs. In the left arm of the PY54 genome, we identified a number of ORFs that obviously code for head and tail proteins. Furthermore, this part of the phage genome contains genes probably involved in plasmid partitioning. Regarding the predicted gene functions and gene order, the PY54 and N15 left arms are similar. However, there are only weak DNA homologies and, in contrast to N15, the Yersinia phage harbours only a few ORFs related to genes found in lambdoid phages. The PY54 right arm comprises mainly regulatory genes as well as genes important for plasmid replication, DNA methylation, and host cell lysis. Out of 36 deduced products of the right arm, 13 revealed strongest database homologies to N15 proteins, of which the protelomerase and the Rep protein are exclusively homologous to their N15 counterparts. A number of PY54 genes essential for the lytic or lysogenic cycle were identified by functional analysis and characterization of phage mutants. In order to study transcription during the lytic and lysogenic stage, we analysed 34 PY54 ORFs by reverse transcriptase (RT)-PCR. The phage transcription patterns in lysogenic bacteria and at the late lytic stage of infection are nearly identical. The reasons for this finding are spontaneous release of phages during lysogeny and a high rate of phages that lysogenize their Yersinia host upon infection.

Amino Acid Sequence↗
PubMed2002

The acute and chronic effects of wastes associated with offshore oil and gas production on temperate and tropical marine ecological processes.

A review of the acute and chronic effects of produced formation water (PFW), drilling fluids (muds) including oil-based cutting muds, water-based cutting muds, ester-based cutting muds and chemical additives, and crude oils associated with offshore oil and gas production was undertaken in relation to both temperate and tropical marine ecological processes. The main environmental effects are summarized, often in tabular form. Generally, the temporal and spatial scales of these studies, along with the large levels of inherent variation in natural environments, have precluded our ability to predict the potential long-term environmental impacts of the offshore oil and gas production industry. A series of critical questions regarding the environmental effects of the offshore oil and gas production industry that still remain unanswered are provided for future consideration.

Animals↗
PubMed2003

Taxonomic significance of flavonoid variation in temperate species of Nothofagus.

Forty-two flavonoids and a stilbene (pinosylvin) were identified in the leaf exudates of 11 temperate species of Nothofagus from South America, Australia and New Zealand. The flavonoid profiles demonstrate significant taxonomic value at the subgeneric level. Most species of subgenus Fuscospora are characterized by the presence of pinosylvin, galangin and galangin methyl ethers. Kaempferol-type flavonols are abundant in subgenus Lophozonia while these flavonols are largely absent from species of subgenus Fuscospora. The flavonoid patterns are largely in agreement with a recent subgeneric classification of Nothofagus.

Cluster Analysis↗
PubMed2003

Morphology of temperate bacteriophage SfV and characterisation of the DNA packaging and capsid genes: the structural genes evolved from two different phage families.

The entire genome of SfV, a temperate serotype-converting bacteriophage of Shigella flexneri, has recently been sequenced (Allison, G.E., Angeles, D., Tran-Dinh, N., Verma, N.K. 2002, J. Bacteriol. 184, 1974-1987). Based on the sequence analysis, we further characterised the SfV virion structure and morphogenesis. Electron microscopy indicated that SfV belongs to the Myoviridae morphology family. Analysis of the proteins encoded by orf1, orf2, and orf3 revealed that they were homologous to small and large terminase subunits, and portal proteins, respectively; the protein encoded by orf5 showed homology to capsid proteins. Western immunoblot of the phage with anti-SfV sera revealed two antigenic proteins, and the N-terminal amino acid sequence of the 32-kDa protein corresponded to amino acids 116 to 125 of the ORF5 protein, suggesting that the capsid may be processed. Functional analysis of orf4 showed that it encodes the phage capsid protease. The proteins encoded by orfs1, 2, 3, 4, and 5 are homologous to similar proteins in the Siphoviridae phage family of both gram-positive and gram-negative origin. The capsid and morphogenesis genes are upstream and adjacent to the genes encoding Myoviridae (Mu-like) tail proteins. The organisation of the structural genes of SfV is therefore unique as the head and tail genes originate from different morphology groups.

Amino Acid Sequence↗
PubMed2003

Biology of the temperate Streptococcus thermophilus bacteriophage TP-J34 and physical characterization of the phage genome.

The temperate Streptococcus thermophilus bacteriophage TP-J34 was identified in the lysogenic host strain J34. The majority of phage particles produced upon induction was defective and noninfectious, consisting of DNA-filled heads lacking tails. A physical map (45.6 kb) was established. Analysis of minor restriction bands of the DNA isolated from phage particles as well as the analysis of the protein pattern indicated that phage TP-J34 is a pac-type phage. This was confirmed by immunoelectron microscopy using antisera raised against virulent cos- and pac-type S. thermophilus phages. The lysogenic host J34 but not its noninducible derivate J34-12 contained phage DNA in the nonintegrated state and exhibited autolysis at elevated temperatures. Prophage-carrying strains grew homogeneously while 16 of 20 prophage-cured derivatives aggregated and sedimented rapidly. When phage TP-J34 was propagated lytically on a prophage-cured host strain, a 2.7-kb site-specific deletion occurred in the phage genome. This deletion was also identified in the prophage DNAs of relysogenized strains.

DNA, Viral↗
PubMed2001

Anaerobic treatment of domestic wastewater in temperate climates: treatment plant modelling with economic considerations.

Although research suggests that anaerobic treatment of low-strength domestic wastewater is possible in temperate climates, to date, full-scale applications have only been pioneered in hot regions. However, burgeoning environmental legislation in developed countries is giving the impetus to develop anaerobic wastewater treatment systems due to potential economic and environmental benefits they hold over traditional aerobic techniques. In this paper a design rationale for low-temperature, low-strength (COD < 1,000 mgl(-1)), two-phase anaerobic wastewater treatment is developed through empirical modelling of data from published research, and from assumptions arising from a literature review. Model calculations are applied to typical domestic sewage characteristics at two different flow rates, based on population equivalents. Results indicate that soluble COD production in the model hydrolytic tank are similar to those achieved in pilot scale plants in the Netherlands. Model anaerobic reactor sludge characteristics are similar to those achieved in pilot and full-scale anaerobic reactors treating low-strength wastewaters. Indicative cost figures for a two-phase anaerobic treatment plant are given, but are incomplete without an assessment of the cost of post-treatment processes. Anaerobic treatment is likely to become more attractive in the future as new legislation relating to sludge disposal and renewable energy generation are introduced.

Bacteria, Anaerobic↗