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Results for “spatial patterning”

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PubMed1996

Organizing spatial pattern in limb development.

Recent studies on the development of the legs and wings of Drosophila have led to the conclusion that insect limb development is controlled by localized pattern organizing centers, analogous to those identified in vertebrate embryos. Genetic analysis has defined the events that lead to the formation of these organizing centers and has led to the identification of gene products that mediate organizer function. The possibility of homology between vertebrate and insect limbs is considered in light of recently reported similarities in patterns of gene expression and function.

Animals↗
PubMed2000

Relationships between spatial patterns of colonic pressure and individual movements of content.

The aim of this study was to examine the relationship between colonic pressure waves and movement of content. In 11 healthy subjects, pressures were recorded at 10-cm intervals from cecum to rectum for 32 h. In six subjects, transit was simultaneously measured for 8 h after direct cecal instillation of 1.5 mCi of (99m)Tc sulfur colloid. Thirty-two percent of isotope movements were related to nonpropagating activity and twenty-eight percent to propagating sequences. The extent of isotope movement related to propagating sequences (25.1 +/- 2.1 cm) was greater than that due to nonpropagating activity (12.8 +/- 0.7 cm; P = 0.0001). Propagating sequences originated significantly more frequently (P = 0.004) and propagated further (P = 0.0006) in the proximal compared with the distal colon. Only 36% of propagating sequences were propulsive of content, and compared with nonpropulsive sequences, these propagated further (41 +/- 6 vs. 27 +/- 2 cm; P < 0.05) and had a higher probability of originating proximally (P = 0.0003), a higher pressure wave amplitude (50 +/- 5 vs. 34 +/- 4 mmHg; P = 0.0001), and slower velocity (2.2 +/- 0.3 vs. 3.6 +/- 0.47 cm/s; P = 0.02). We conclude that most movements of colonic content are related to pressure waves. There is marked regional variation in the prevalence, velocity, and extent of propagation of propagating pressure wave sequences, which are an important mechanism for transporting content over long distances. The effectiveness of transport by a propagating sequence is influenced by its site of origin, amplitude, and velocity.

Adolescent↗
PubMed1995

Odorant-specific spatial patterns in mucosal activity predict perceptual differences among odorants.

1. Using operant techniques, rats were trained to differentially report (i.e., identify) the odorants propanol, carvone, citral, propyl acetate, and ethylacetoacetate. After acquisition training, the animals were tested using a 5 x 5 confusion matrix design. The results of the behavioral tests were used to measure the degree of perceptual dissimilarity between any pair of odorants. These dissimilarity measures were then subjected to multidimensional scaling analysis to establish a two-dimensional perceptual odor space for each rat. 2. At the completion of behavioral testing, the fluorescence changes in the dye di-4-ANEPPS were monitored on the rat's nasal septum and medial surface of the turbinates in response to the same odorants. For each mucosal surface a 6.0 x 6.0 mm area was sampled at 100 contiguous sites with a 10 x 10 photodiode array. 3. Formal statistical analysis indicated a highly significant predictive relationship between the relative position of an odorant's mucosal loci of maximal activity or "hot spot" and the relative position of the same odorant in a psychophysically determined perceptual odor space (F = 15.6, P < 0.001). 4. The results of this study suggest for the first time that odorant-induced mucosal activity patterns serve as the substrate for the perception of odorant quality.

Animals↗
PubMed1997

Topographical analysis of spatial patterns generated by a cellular automaton model of the proliferation of a cancer cell line in vitro.

A well-suited model to simulate cellular population dynamics is the two-dimensional cellular automaton model, which consists of a lattice of sites, the value ai,j of each site being updated in discrete time steps according to an identical deterministic rule depending on a neighbourhood of sites around it. A cellular automaton is described which mimics cell population proliferation by replacing the site values by the age and the cycle phase of cells. The model takes into account the size of the cells. It is used to simulate the proliferation of the human breast cancer cell line MCF-7 and the results of the simulation are compared with experimental data obtained from a light microscopic image analysis of the proliferation process. The initial configuration of the cellular automaton is obtained from the discretization of the results of the initial stage of the image processing. After each day of proliferation the pattern obtained from the simulation is compared to the experimental result of the corresponding image analysis. The comparison is made from a topographical point of view through the concept of the minimal spanning tree graph. The agreement between experiment and model is a good starting point to complex models such as cell proliferation under growth effectors or drugs.

Breast Neoplasms↗
PubMedDate not supplied

Spatial patterning of colloidal nanoparticle-based thin film by a combinative technique of layer-by-layer self-assembly and lithography.

A novel approach to generating clear patterns of different types of nanoparticles is presented in this paper. Nanoassembly in the vertical direction was combined with planar micropatterning. This provides industrial applications of a popular layer-by-layer method to produce multilayers of polymers, nanoparticles, and proteins organized on the nanometer scale. A thin film of organic polystyrene spheres was first coated on the pretreated silicon wafer with layer-by-layer self-assembly. Then a layer of aluminium was deposited on the thin film. A layer of positive photoresist was spun on the surface of aluminum and then illuminated with UV light. The exposed parts of the resist were removed and windows were opened above the aluminum. The subsequent etching removed exposed aluminium and left a polystyrene thin film in the open windows. Oxygen plasma was employed to remove the polystyrene thin film on the bottom. Eventually, aluminum and photoresist were removed and only the desired pattern remained. This approach was also employed for the patterning of the silica nanoparticle thin film, a widely used material in various applications. In this case, wet etching was demonstrated to etch silica particles. A scanning electron microscope was used to produce the image of the pattern.

Aluminum↗
PubMed1987

Developmental and spatial patterns of expression of the mouse homeobox gene, Hox 2.1.

The Hox 2.1 gene forms part of a cluster of homeobox-containing genes on mouse chromosome 11. Analysis of Hox 2.1 cDNAs isolated from an 8 1/2-day p.c. mouse embryo library predicts that the gene encodes a 269 amino acid protein (Mr, 29,432). This deduced protein contains a homeobox 15 amino acids from the carboxy terminus and is very rich in serine and proline. A second partially conserved region present in several other genes containing homeoboxes, the hexapeptide Ile-Phe-Pro-Trp-Met-Arg, is located 12 amino acids upstream of the homeodomain and is encoded by a separate exon. Analysis of Hox 2.1 gene expression reveals a complex and tissue-specific series of RNA transcripts in a broad range of fetal tissues (lung, spinal cord, kidney, gut, spleen, liver and visceral yolk sac). Comparison of the temporal patterns of gene expression during development and in the adult suggests that Hox 2.1 is regulated independently in different tissues. Evidence is also presented that transcripts from other loci have extensive homology to the Hox 2.1 gene in sequences outside of the homeobox. In situ hybridization shows that Hox 2.1 transcripts are regionally localized in the spinal cord in an apparent anterior-posterior gradient extending from the hind brain. The distribution of RNA also displays a cell-type specificity in the lung, where mesodermal cells surrounding the branching epithelial cell layer accumulate high levels of Hox 2.1 transcripts.

Amino Acid Sequence↗
PubMed1993

Changing spatial patterns of DNA replication in the noise-damaged chick cochlea.

The purpose of the present study was to examine the spatio-temporal pattern of cell proliferation in the chick cochlea in response to the sensory hair cell loss induced by a 1.5 kHz pure tone at 120 dB SPL (1 dB = 20 muPa) for 48 h. DNA replication was evaluated with the bromodeoxyuridine (BrdU) pulse-fix technique. One group of birds was given multiple injections of BrdU (50 mg/kg) over a period of 8 h at various starting times during or after the exposure. Afterwards, their cochleas were removed and processed as whole mounts for BrdU immunohistochemistry. The cochleas of a second group of acoustically traumatized chicks were evaluated by scanning electron microscopy in order to determine the spatio-temporal pattern of hair cell loss. Hair cell loss was first observed 12 h after the start of the exposure and DNA replication started near the inferior edge of the hair cell lesion 24-32 h after the start of the exposure, i.e. 12-20 h after the first sign of hair cell loss. The site of hair cell loss and DNA replication shifted toward the superior edge of the basilar papilla as the exposure continued. The rate of DNA replication accelerated and reached its peak near the end of the 48 h exposure. The estimated latency of cell proliferation after hair cell loss was faster and the duration of DNA replication shorter than that observed in other sensory systems. The spatio-temporal pattern of DNA replication follows the spatio-temporal gradient of hair cell loss, suggesting that cell proliferation is triggered by hair cell loss itself rather than by intrinsic positional cues or gradients.

Animals↗
PubMed2003

Spatial patterns of spontaneous local field activity in the monkey visual cortex.

Spontaneous activity among visually responsive neurons is often considered to consist of random neural events, or perhaps to reflect an irrelevant by-product of brain homeostasis. However, recent studies have emphasized that such ongoing activity is strongly synchronized over large cortical distances, and can have a marked impact on the responsiveness of neurons to visual stimuli, suggesting that such activity may indeed be highly relevant to the brain's interpretation of its sensory input. In the current study, we examined the spatiotemporal nature of local field potential (LFP) fluctuations in the visual cortex of two macaque monkeys that were awake, but in a state of relaxation with minimal visual stimulation. Using an array of 16 electrodes spaced by several millimeters, we simultaneously monitored the LFP at many sites over a large region of the visual cortex. In agreement with the literature, we found that the coherence in the raw LFP signal fell off quickly with both frequency and distance. However, when we examined slower fluctuations in the LFP power, we found that power signals, including those derived from the high y-range frequencies, had high coherence that fell off only very slowly with cortical distance. Finally, we performed an additional experiment, with several electrodes placed on either side of a sulcus, to demonstrate that the decline in local field synchrony with cortical distance was so reliable that the interruption in the cortical sheet corresponding to the opening of the sulcus could be easily identified by monitoring just a few minutes of spontaneous LFP activity. These experiments reveal that a significant portion of spontaneous LFP fluctuations in the visual cortex is contributed by global mechanisms, imposing synchrony that is, first and foremost, a function of cortical separation between any two points.

Animals↗
PubMed2001

Temporal and spatial patterns on serra, Scomberomorus brasiliensis (Teleostei, Scombridae), catches from the fisheries on the Maranhão coast, Brazil.

The displacement pattern of the serra, Scomberomorus brasiliensis, in North-eastern Brazil was analyzed from landing data recorded form the fleet fishing serra. Serra fishery has two seasons: from Septemer to February (demersal species plus serra), and from March to August (almost only large amounts of serra). S. brasilienisis relative abundance increases similarly along the coast from March. but decreases first on the West coast from June. Records indicate that serra is near the coast at least until September/October in Eastern grounds. From October to March (strongest spawning season) there is no record of shoals on the coast. We concluded that the Maranhão coast is just a part of the migration circuit of S. brasilienisis that may exceed 300 nautical miles.

Animals↗