Search PubMed⌕ Search

SEARCH · Search PubMed

Results for “rate of evolution”

Search indexed PubMed citations on genomics, clinical trials, systematic reviews and public health. Explore titles, authors and supplied subject terms, then open the PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 379 records · Page 21Linked to original sources

The self-setting properties and in vitro bioactivity of tricalcium silicate.

In this study, tricalcium silicate (Ca(3)SiO(5)), as a new promising injectable bioactive material, was employed to investigate its physical and chemical properties for an injectable bioactive cement filler. The workable Ca(3)SiO(5) pastes with a liquid to powder (L/P) ratio of 0.8--.2 mlg(-1)could be injected for 15--60 min (nozzle diameter 2.0mm). The setting process yielded cellular structures with compressive strength of 6.4--20.2 MPa after 2--28 days. The in vitro bioactivity of Ca(3)SiO(5) paste was investigated by soaking in simulated body fluid (SBF) for various periods. The result showed that the Ca(3)SiO(5) paste could induce hydroxyapatite (HA) formation and dissolve slowly in SBF. The result of indirect cytotoxicity evaluation indicated that Ca(3)SiO(5) paste had a stimulatory effect on cell growth in a certain concentration range. The exothermic process showed that Ca(3)SiO(5) had lower heat evolution rate during the hydration as compared to calcium phosphate cement (CPC). Our results indicated that Ca(3)SiO(5) paste was bioactive and dissolvable, and it is a progressive candidate for further investigation as injectable tissue repairing substitute.

Animals↗

Response of microcystis to copper stress: do phenotypes of microcystis make a difference in stress tolerance?

To elucidate the role of phenotype in stress-tolerant bloom-forming cyanobacterium Microcystis, two phenotypes of M. aeruginosa - unicellular and colonial strains were selected to investigate how they responded to copper stress. Flow cytometry (FCM) examination indicated that the percents of viable cells in unicellular and colonial Microcystis were 1.92-2.83% and 72.3-97.51%, respectively, under 0.25 mgl(-1) copper sulfate treatment for 24h. Upon exposure to 0.25 mgl(-1) copper sulfate, the activities of antioxidative enzyme, such as superoxide dismutase (SOD) and catalase (CAT), were significantly increased in colonial Microcystis compared to unicellular Microcystis. Meanwhile, the values of the photosynthetic parameters (F(v)/F(m), ETR(max), and oxygen evolution rate) decreased more rapidly in unicellular Microcystis than in colonial Microcystis. The results indicate that colonial Microcystis has a higher endurance to copper than unicellular Microcystis. This suggests that the efficient treatment concentration of copper sulfate as algaecides will be dependent on the phenotypes of Microcystis.

Antioxidants↗

The symptomless leaf infection with grapevine leafroll associated virus 3 in grown in vitro plants as a simple model system for investigation of viral effects on photosynthesis.

The photosynthetic changes evaluated by oxygen evolution, chlorophyll fluorescence, photoacoustics, and delayed fluorescence (DF) were studied in leaves of grown in vitro for 8 weeks grapevine plants (Vitis vinifera) infected by grapevine leafroll-associated virus 3 (GLRaV-3). The infected leaves were characterized during the viral infection without visible disease symptoms. The symptomless infection led to a decrease in plant biomass. The non-photochemical fluorescence quenching, qN, declined, whereas the photochemical quenching, qP, and the Chl a/b ratio were not significantly affected. Photoacoustic and oxygen evolution measurements showed that the energy storage and oxygen evolution rate decreased in the infected leaves. Enhanced alternative electron sinks during the symptomless viral infection were also estimated. The changes in fluorescence and DF temperature curves demonstrated an enhanced stability of the thylakoid membranes in the infected leaves. This effect was clearly expressed at high actinic light intensities. The viral infected in vitro grown grapevine plants were used in the present study as a simplified model system that allow to avoid the involvement of different environmental factors that could interfere with the GLRaV infection and the virus-grapevine interactions. Thus, the 'pure' impact of the viral infection on photosynthesis could be investigated.

Chlorophyll↗

Chromosomal fragility, structural rearrangements and mobile element activity may reflect dynamic epigenetic mechanisms of importance in neurobehavioural genetics.

Advances in human genome analyses have not yet allowed identification of specific genetic mechanisms underlying the expression of human neurobehavioural disorders. There is an increasing awareness that several genes may contribute to behavioural phenotypes and these genes appear to interact in as yet undetermined ways. It has been suggested that the problem needs elucidation from an epigenetic, gene expression perspective. Cytogenetic instability manifesting as chromosomal fragile sites, translocations, duplications, deletions and inversions, when co-occurring with neurobehavioural disorders, may offer a doorway to the investigation of such chromatin level, regulatory region, epigenetic processes. Due to earlier indications of non-specificity of chromosomal aberrations, poor phenotype:genotype correlations and a shift to analysing candidate coding regions on high resolution map level, the only utility of chromosomal breakpoints came to be seen as harbouring possible candidate genes of interest when segregating together with particular neurobehavioural disorders. More recent findings of the expression of highly specific subsets of fragile sites in association with Tourette and Rett syndromes need to be extended to other neurobehavioural disorders to ascertain whether observed patterns can be considered representative of 'chromatin endophenotypes' correlating with discrete sets of neurobehavioural symptoms. Environmental/epigenetic factors could affect the chromatin characteristics of the genome arising through DNA strand breakage, mobile element activity and retroinsertion, establishing new architectural features of regulatory control networks very rapidly in comparison to coding region evolution rates. Microarray-based techniques for the genome-wide mapping of in vivo protein-DNA interactions offer increasingly comprehensive views of genetic and epigenetic regulatory networks. It may be informative to include functionally significant chromatin structural variation analyses when considering candidate genes for neurobehavioural disorders.

Cell Cycle↗

Differential accumulation of mutations localized in particular domains of the mucin genes expressed in the vertebrate host stage of Trypanosoma cruzi.

The surface of Trypanosoma cruzi is covered by mucin-type glycoproteins involved in parasite protection, attachment and immunoevasion. The gene family coding for the mucins expressed by the parasite in the vertebrate host, named TcMUC, is composed of several hundred members and presents high variability. The genes encoding mucins expressed in the insect-dwelling parasite stages are part of a much more homogeneous family, named TcSMUG. Here, we addressed the organization and evolution of physically linked T. cruzi mucin genes by sequencing large chromosomal fragments containing these genes. Specific accumulation of mutations was restricted to particular domains of TcMUC genes, showing that these regions have, or have had, an accelerated evolution rate. Sequence analysis of several TcMUC genes allowed for the identification of members sharing features of TcMUC I and II, thus evidencing that one group of genes was generated from the other. The highly conserved intergenic regions of both TcMUC and TcSMUG families contained TG-rich microsatellites that were not present in unrelated genes in the cosmids, suggesting a role for homologous recombination in shuffling and/or amplification of T. cruzi mucin genes. The comparison of putative homologous TcMUC II genes from different strains of T. cruzi showed that their central variable domains are conserved. This conservation was always higher at the DNA level suggesting positive selection in these particular regions of TcMUC II genes.

Animals↗

Staging deep venous thrombosis using ultrasound elasticity imaging: animal model.

Deep venous thrombi undergo progressive hardening with age. However, the evolution rate remains poorly characterized by both invasive and noninvasive techniques. In a previous study (Emelianov et al. 2002), we demonstrated the potential of ultrasound elasticity imaging to noninvasively detect and age thrombus using a rat-based model. Knowing that thrombi harden over time is useful, but the value of the technique relies on whether the age of a thrombus can be predicted from strain estimates, and how accurate these predictions are. The objective of the present study is to answer these two questions. In the previous study, thrombus elasticity changes were monitored only on day 3, 6 and 9 after surgically induced formation of thrombosis in rat inferior vena cavas. In this study, ultrasound elasticity imaging was performed on two independent groups of rats (16 in total) starting from day 3 through day 10 with more temporal samples through the thrombus maturation process. For each rat, thrombus hardness was quantified at each scan interval by measures of normalized strains and reconstructed relative Young's moduli. In both groups, strain magnitudes exhibit progressive decrease as clots age. The relationship between the normalized strain and the clot age was developed from the first group and evaluated by the second group. Statistical analysis showed that the age estimation accuracy is within 0.8 day. If further research can successfully transfer the animal clot-hardening model to human patients, we believe that elasticity imaging will become a key component of venous compression ultrasound for effective diagnosis and treatment of deep venous thrombosis.

Animals↗

Ultrasonic damages on cyanobacterial photosynthesis.

Excessive cyanobacterial growth in eutrophic water sources has been a serious environmental problem, and both sight preservation and drinking water production demand control of cyanobacterial growth in water. Ultrasonic treatment was reported to effectively inhibit cyanobacterial growth through vesicle collapsing and cell fracturing, but little was known about the change of cyanobacterial photosynthesis during sonication. This paper examined the ultrasonic inhibition of Microcystis aeruginosa cell growth and extracellular microcystins release, and the instant ultrasonic decreases of antenna complexes like cyanobacterial chlorophyll a and phycocyanins (PC), and the oxygen evolution rate. The results showed that sonication effectively damaged antenna complexes, slowed down the photo-activity, which significantly inhibited the cell growth and microcystins formation and release.

Cell Proliferation↗

Alternate circulation of recent equine-2 influenza viruses (H3N8) from two distinct lineages in the United States.

Phylogenetic and antigenic analyses indicate that recent circulating equine-2 influenza viruses in the United States have been alternating between two genetic and antigenic distinct lineages since 1996. The evolution rates for these two lineages, the Kentucky and the Florida lineage, are very similar. For the earlier isolates in the Kentucky lineage, there are multiple and sequential nonsynonymous substitutions at antigenic sites B and D. However, there are no changes at any of these antigenic sites for KY98 and OK00. In the Florida lineage, except for NY99 with one amino acid substitution at antigenic site B, viruses in this lineage do not have nonsynonymous substitutions at any of the antigenic sites. The lack of amino acid substitutions at these antigenic sites suggests a mechanism other than immune selection is responsible for the maintenance of these viral lineages. Serological analysis indicates that these two lineages are antigenic distinct, and the pattern of reactivity of horse sera towards these two lineages alternates in consecutive years, parallel to the "switching" of virus lineage seen in the phylogenetic tree. This alternate circulation may play a role in the maintenance of these two lineages of equine-2 influenza virus.

Amino Acid Sequence↗

Molecular cloning and characterization of FSH and LH receptors in Atlantic salmon (Salmo salar L.).

Two cDNAs encoding the FSH receptor (FSHR) and the LH receptor (LHR) from Atlantic salmon (Salmo salar) were cloned and characterized. The predicted protein sequence for FSHR comprises a mature protein of 635 amino acids (aa) and a signal peptide of 23aa, and for LHR a mature protein of 701aa and a signal peptide of 27aa. Multiple sequence alignment of Atlantic salmon FSHR and LHR with gonadotropin receptor sequences of available teleosts and representative vertebrates revealed high sequence homology with other salmonids (97-98% for both receptors); amino acid identities ranged from 59 to 67% for FSHR and 47-79% for LHR compared with other teleosts, and between 50 and 52% compared with other vertebrates. The salmon FSHR and LHR showed the typical characteristics of glycoprotein receptors, including a long N-terminal extracellular domain (ECD), seven transmembrane domains and a short C-terminal intracellular domain. The ECD of the Atlantic salmon FSHR and LHR were composed of nine imperfect leucine-rich repeats forming the potential recognition sites for the corresponding hormone. The comparative analysis of the recognition sites in the Atlantic salmon gonadotropin receptors with the corresponding sites in the human receptors showed that the nature of the residues involved in the key contacts with the glycoprotein alpha-subunit were highly conserved. In contrast the recognition sites for the specific beta-subunits showed clear differences between the two salmon gonadotropin receptors and the human receptors. In the salmon LHR the recognition sites for the LH beta-subunit were relatively conserved, while the recognition sites for the FSH beta-subunit in the salmon FSHR showed a higher divergence, suggesting different evolution rates for the two teleost gonadotropin receptors. Both FSHR and LHR were mainly expressed in the ovary and testis, but were also detected at low abundance in extra-gonadal tissues such as gills, brain, liver and heart.

Amino Acid Sequence↗

Isolation and characterisation of oxygen evolving thylakoids from the marine prokaryote Prochloron didemni.

The present study describes the first successful attempt to isolate oxygen evolving thylakoids and thylakoid fragments from the marine prokaryote Prochloron didemni, a member of the recently discovered group of prochlorophytes. Oxygen evolving thylakoid membranes and fragments were isolated from seawater suspended cells of Prochloron didemni by passage of the cells through a Yeda press and subsequent differential centrifugation of the broken material. Three fractions were collected at 1000 x g, 5000 x g, and 3000 x g and identified by light microscopy as cells (and their fragments), thylakoids and membrane fragments, respectively. Pigment content, oxygen evolution rate and 77 K fluorescence spectra of these fractions were virtually identical. This finding indicates that the membrane fragments obtained are not enriched in photosystem II. The P680+* reduction kinetics of thylakoid membrane fragments were determined by monitoring flash induced absorption changes at 830 nm and analysing the time course of their decay. The multiphasic relaxation kinetics and their modification by NH2OH were found to be similar to those observed in cyanobacteria and plants. These findings provide an independent line of evidence for the idea of a high conservation of the basic structural and functional pattern of the water oxidising complex in all organisms that perform oxygenic photosynthesis.

Chlorophyll↗

Effects of mild night chilling on respiration of expanding cotton leaves.

Utilizing expanding leaves of cotton (Gossypium hirsutum L. cv. Coker 312), the hypothesis that suboptimal night temperatures above those for putative phase transitions of mitochondrial lipids caused greater substrate control of night respiration and increased the control that respiration exerted on ATP-dependent metabolism was tested. Night respiratory CO(2) evolution rates for 5-7-day-old leaves growing at 30/19 degrees (day/night) nearly equaled those of leaves exposed to 28 degrees C nights, while leaves exposed to 15 degrees C nights had rates that were 42% of those at 28 degrees C. No restriction of respiration by carbohydrate supply was detected for leaves grown at either cool night temperature or when warm-grown plants were transferred to cool night conditions. Pyruvate utilization was more sensitive to mild chilling than glycolysis. Growth at 30/19 or 30/15 degrees C resulted in higher nocturnal ATP:ADP and energy charge for expanding leaves than growth at 30/28 degrees C, suggesting a lessening of respiratory control of ATP-dependent metabolism with long-term night chilling. However, cool night exposure resulted in reductions in total phosphorylated adenylates, and the low ATP content, most notably occurring during 15 degrees C nights, may have restricted some metabolic activity. The cause of these low ATP levels and their possible effects on cotton metabolism during chilling remain to be elucidated.

Journal Article↗

[Avian influenza A (H5N1) infectious in both birds and humans in South-Eastern Asian countries].

Avian influenza affects most types of birds and occurs in epidemics on poultry farms. The fatal disease is named "highly pathogenic avian influenza" and is caused by influenza A virus subtypes H5 and H7. The natural reservoir is the migratory waterfowl that occasionally infects domestic poultry. In 1997 in Hong Kong, 18 persons were infected and 6 of them died. At the end of 2003 and the beginning of 2004, avian influenza H5N1 infected numerous farms in several South-Eastern Asian countries. The virus was transmitted to humans in close contact with infected birds. A total of 34 persons were infected and 23 of them died. There is currently a considerable concern about the H5N1 avian influenza that has infected humans: the high virulence, evolution rate, the possibility of recombination with other influenza viruses, how H5N1 variants that infect humans or different approaches to the development of influenza vaccines.

Animals↗

Oxygen release kinetics from solid phase oxygen in Arctic Alaska.

Child's Pad is a gravel construction surface that was contaminated with petroleum during oil-field service operations in Deadhorse, Alaska. As part of a remedial action plan, a buffer strip of uncontaminated sandy gravel was placed along sections of the pad boundary. A magnesium peroxide formulation manufactured by Regenesis, and sold as Oxygen Release Compound (ORC), was placed in the buffer strips. The ORC was intended to supply oxygen to aerobic microorganisms capable of degrading petroleum. Studies were conducted in the laboratory to determine initial oxygen release kinetics from ORC in contact with barrier soil. Studies quantified the biotic and abiotic catalytic mechanisms for converting hydrogen peroxide (a possible MgO2 intermediate) and ORC to oxygen and water, the effects of temperature on oxygen release from ORC, and the effect of field exposure on ORC viability. Barrier soil exhibited sufficient catalytic activity to convert hydrogen peroxide to oxygen faster than the expected biological demand. The oxygen evolution rate (OER) from ORC was lower at 7 degrees C than 21 degrees C by more than two times. The ORC recovered from Child's Pad after less than 1 year retained nearly all of the original available oxygen, although physical bridging was evident.

Alaska↗

Molecular characterization of a HMW glutenin subunit allele providing evidence for silencing of x-type gene on Glu-B1.

Understanding the molecular structure of high-molecular-weight glutenin subunit (HMW-GS) may provide useful evidence for the study on the improvement of quality of cultivated wheat and the evolution of Glu-1 alleles. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) shows that the subunits encoded by Glu-B1 were null, named 1Bxm, in a Triticum turgidum var. dicoccoides line PI94640. Primers based on the conserved regions in wheat HMW-GS gene promoter and coding sequences were used to amplify the genomic DNA of line PI94640. The PCR products were sequenced, and the total nucleotide sequence of 3,442 bp including upstream sequence of 1,070 bp was obtained. Compared with the reported gene sequences of Glu-1Bx alleles, the promoter region of the Glu-1Bxm showed close resemblance to 1Bx7. The Glu-1Bxm coding region differs from the other Glu-1Bx alleles for a deduced mature protein with only 212 residues, and a stop codon (TAA) at 637 bp downstream from the start codon was present, which was probably responsible for the silencing of x-type subunit genes at the Glu-B1 locus. Phylogenetic tree based on the nucleotide sequence alignment of HMW glutenin subunit genes showed that 1Bxm was the most ancient type of Glu-B1 alleles, suggesting that the evolution rates are different among Glu-1Bx genes. Further study on the contribution of the unique silenced Glu-B1 alleles to quality improvement was also discussed.

Alleles↗

Light regulation of cyclic-AMP levels in the red macroalga Porphyra leucosticta.

Total cyclic-3'-5'-adenosine monophosphate (cAMP) levels were measured in the gametophyte of the red macroalga Porphyra leucosticta under different light conditions in order to study its regulation by phytochrome or photosynthesis. cAMP levels were relatively low when samples were incubated in darkness, or exposed to red or far-red light. Irradiation with red+far-red light induced a moderate increase in cAMP levels, while white light induced a pronounced increase in cAMP levels. When incubated under increasing white light irradiance, cAMP levels closely followed the increase in photosynthetic oxygen evolution rate, suggesting a direct relationship between photosynthesis and cAMP accumulation. cAMP levels were not dependent on cellular ATP concentration, as inhibitors of ATP synthesis did not significantly affect cAMP levels in light. We conclude that cAMP depends on photosynthetic activity regardless of ATP synthesis and concentration or phytochrome activity.

Adenosine Triphosphate↗

Ultraviolet-A induced changes in photosystem II of thylakoids: effects of senescence and high growth temperature.

Ultraviolet-A (UV-A) radiation induced changes in photosystem II (PS II) of senescing leaves of wheat seedlings were investigated. UV-A radiation did not show any significant effect on the level of photosynthetic pigments. However, the decline in F(v)/F(m) and oxygen evolution rate indicated the damaging effect of the radiation on primary photochemistry of PS II. Modification at the Q(B)-binding site was inferred from the observed downshift of peak temperature of thermoluminescence (TL) B-bands. The UV-A induced changes in PS II of chloroplasts from senescing leaves were found to be synergistically accelerated by high growth temperature.

Photosystem II Protein Complex↗

Internal mammary lymphoscintigraphy: current status in the treatment of breast cancer.

In the management of breast carcinomas, the internal mammary lymphoscintigraphy represents a simple, nontraumatic and reproducible technique to visualize and investigate the internal mammary nodes. As suggested by the total absence of visualization of nodes on the operated side in all or in the two upper intercostal spaces, internal mammary chain invasion concerns 30% of the population. This frequency increases with the clinical staging of the tumor, its size, and the extent of the disease in the axilla. It is higher for tumors of inner rather than of outer quadrants. When internal mammary lymphoscintigrams are compared in frontal view to the limits of the usual irradiation fields, parasternal nodes outside these limits or in borderline position are observed in 15 to 34% of the population according to the X-ray technique used. Furthermore, 40% of the tangential irradiation fields does not give an adequate irradiation dose to the internal mammary nodes. In one case out of four, IMLSc allows the reduction of useless heart- and lung-irradiated volumes. Internal mammary node invasion as demonstrated by lymphoscintigraphy has been demonstrated to have a prognostic value as the anatomopathological axillary node status, concerning both survival and disease evolution rates. IMLSc, when compared to the other possible investigation techniques of these nodes (X-ray computed tomography, echography or surgery, etc.), represents at the present time the investigation method of choice with the widest implications (diagnostic, therapeutic, and prognostic).

Breast↗

Enhanced hydrogen production by a mutant of Rhodobacter sphaeroides having an altered light-harvesting system.

A stable mutant of the photosynthetic bacterium Rhodobacter sphaeroides with an altered light-harvesting (LH) system (P3 mutant) was obtained by UV irradiation and characterized. The mutant exhibited a 2.7-fold decrease in the core antennal (LH1) content and 1.6-fold increase in peripheral antennal (LH2) content compared to the wild-type strain. The H2 evolution rates in the P3 mutant under 800- and 850-nm light, corresponding to the absorption maxima of LH2, were 1.5 times higher than in the wild-type strain. The wild-type absorption spectrum was restored in the P3 mutant when a 1.1-kb PCR-amplified fragment containing the puf promoter and pufQBA genes was ligated into a pRK-415 derivative and introduced into it. The transformant showed lower H2 production rates at 800 and 850 nm than the P3 strain carrying the control plasmid, indicating that the accelerated H2 production in the P3 mutant was a result of alterations in the LH system.

Journal Article↗