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PubMed1994

Conformation changes of beta-lactoglobulin: an ATR infrared spectroscopic study of the effect of pH and ethanol.

Fourier transform infrared spectroscopy has been applied to investigate the secondary structural changes of beta-lactoglobulin in water/ethanol mixtures. The studies were carried out at two different pHs and at high protein concentrations. The spectra were recorded using an attenuated total reflection cell. The amide I band of beta-lactoglobulin in water reveals large amounts of intra extended beta-sheet structure. About 20% ethanol, beta-lactoglobulin unfolds and beta-strand formation is observed. alpha-Helices are built up by increasing the ethanol concentration up to 30%. In 50% ethanol, beta-lactoglobulin gels providing the apparent pH are neutral. The secondary structural changes of beta-lactoglobulin were observed on the similarity maps obtained by Principal Component Analysis.

Animals↗
PubMed1990

Orientation studies of hydrated dipalmitoylphosphatidylcholine multibilayers by polarized FTIR-ATR spectroscopy.

Polarized Fourier-transform infrared-attenuated total reflection spectroscopy has been applied to explore the temperature-dependence of molecular orientations in multibilayers of 1,2-dipalmitoyl-sn-glycero-3- phosphocholine (DPPC) of various degrees of hydration. The order parameter of the hydrocarbon chain, evaluated from the dichroic ratios of the antisymmetric and symmetric CH2 stretching bands, was drastically decreased at the main (or gel to liquid-crystalline phase) transition temperature (Tm) irrespective of the water content, suggesting that the hydrocarbon chain is in a disordered state as a result of chain-melting associated with an increase in the number of the gauche conformers. On the other hand, the dichroic ratios of the polar bands of hydrated DPPC assignable to the symmetric PO2- stretching and asymmetric N+ (CH3)3 stretching modes were increased mainly at the pretransition temperature (Tp), except for less hydrated case. The dichroic ratios of both the OH stretching and OH2 bending bands of water showed the same temperature-dependence as those of the polar bands. These results indicate that the pretransition is ascribable mainly to the reorientation of the polar groups of the DPPC and bound water, while the main transition is due to the orientational disorder of the hydrocarbon chains. For less hydrated DPPC, the reorientation of the polar groups and water did not occur around Tp, but in the higher temperature region around Tm. This is in accord with the previously reported observation that the pretransition disappears for less hydrated DPPC. In this case, the polar groups and water may reorient following the reorientation of the hydrocarbon chains near Tm.

1,2-Dipalmitoylphosphatidylcholine↗
PubMed1992

Degradation of five polyurethane gastric bubbles following in vivo use: SEC, ATR-IR and DSC studies.

Five Garren-Edwards Gastric Bubbles were characterized, following up to 4 months use in vivo, using size exclusion chromatography, differential scanning calorimetry and attenuated total reflectance infrared spectroscopy. These techniques show that the material used to construct the bubble is probably an aromatic polyester urethane and revealed a 39-55% decrease in number average molecular weight, a 9 degrees C decrease in glass transition temperature, the disappearance of soft segment crystallinity and a broadening of the hard segment melting region after exposure to highly acidic (approximately pH 1.2) gastric fluid. The results indicate that significant chemical and morphological changes have taken place in the bubble material, including loss in chemical functionality, phase separation and increased hard segment aggregation. A comparison of the decrease in glass transition temperature as a function of molecular weight suggests that glass transition temperature is a sensitive predictor of this material's stability. Additionally, evidence is provided that the broad infrared absorption at 1077-1067 cm-1 normally assigned to C-O-C hard segment may represent two types of C-O-C stretching: (1) C-O-C stretching of the free urethane carbonyl, and (2) C-O-C stretching of the hydrogen bonded urethane carbonyl.

Biodegradation, Environmental↗
PubMed2005

Physicochemical model of alginate-poly-L-lysine microcapsules defined at the micrometric/nanometric scale using ATR-FTIR, XPS, and ToF-SIMS.

Alginate-poly-L-lysine-alginate (APA) microcapsules are currently being investigated as a means to immuno-isolate transplanted cells, but their biocompatibility is limited. In this study, we verified the hypothesis that poly-L-lysine (PLL), which is immunogenic when unbound, is exposed at the APA microcapsule surface. To do so, we analysed the microcapsule membrane at the micrometric/nanometric scale using attenuated total reflectance Fourier transform infrared spectroscopy, X-ray photoelectron spectroscopy, and time-of-flight secondary ion mass spectrometry. The results indicate that PLL and alginate molecules interact within the membrane. PLL exists in considerable amounts near the surface, contributing to the majority of the carbon within the outermost 100 Angstroms of the membrane. PLL was also detected at the true surface (the outermost monolayer) of the microcapsules. The exposure of PLL does not appear to result from defects in the outer alginate coating. This physicochemical model of APA microcapsules could explain their immunogenicity and will play an important role in the optimization of the microcapsule design.

Alginates↗
PubMed1999

Quantitation of secondary structure in ATR infrared spectroscopy.

Polarized attenuated total reflection infrared spectroscopy of aligned membranes provides essential information on the secondary structure content and orientation of the associated membrane proteins. Quantitation of the relative content of different secondary structures, however, requires allowance for geometric relations of the electric field components (E(x), E(y), E(z)) of the evanescent wave, and of the components of the infrared transition moments, in combining absorbances (A and A(perpendicular)) measured with radiation polarized parallel with and perpendicular to, respectively, the plane of incidence. This has hitherto not been done. The appropriate combination for exact evaluation of relative integrated absorbances is A + (2E(z)(2)/E(y)(2) - E(x)(2)/E(y)(2))A(perpendicular), where z is the axis of ordering that is normal to the membrane plane, and the x-axis lies in the membrane plane within the plane of incidence. This combination can take values in the range approximately from A - 0.4A(perpendicular) to A + 2.7A(perpendicular), depending on experimental conditions and the attenuated total reflection crystal used. With unpolarized radiation, this correction is not possible. Similar considerations apply to the dichroic ratios of multicomponent bands, which are also treated.

Animals↗
PubMed1997

ATR-FTIR spectroscopic investigation of E. coli transconjugants beta-lactams-resistance phenotype.

Hyphenation of attenuated total reflection Fourier transform infrared spectroscopy and cluster analysis has been used to characterise a susceptible Escherichia coli K12 strain and the transconjugants TEM-1, TEM-2, TEM-3, SHV-2, SHV-3, SHV-4. A good discrimination of the susceptible strain from the transconjugants was obtained. Although a limited success was achieved in the differentiation of SHV and TEM phenotypes in general, results obtained with TEM-2 and SHV-3 were convincing. Spectral differences observed are ascribed to the global effects of the conjugation process, particularly their repercussions in the nucleic acids and carbohydrate absorbing regions, rather than to beta-lactamase point-mutations.

Conjugation, Genetic↗
PubMed2003

ATM and ATR.

Explore the source record for details and available documents.

Animals↗
PubMed2003

On some characteristic properties of ATR liquid light conductors.

Electronic spectra of aqueous solutions of the malachite green dye have been measured by liquid and solid spectroscopy. Particular characteristics of the light conductor itself have been shown to have no considerable effect on the results of the experiment.

Rosaniline Dyes↗
PubMed1999

Physical characterization of the stratum corneum of an in vitro human skin equivalent produced by tissue engineering and its comparison with normal human skin by ATR-FTIR spectroscopy and thermal analysis (DSC).

An in vitro human skin equivalent may be obtained by culturing human keratinocytes on a collagen gel containing fibroblasts. The anchored skin equivalent cultured at the air-liquid interface closely resembles human skin and is acceptable for in vitro percutaneous absorption. However, it is still more permeable than human skin. Since intercellular lipids have been recognized to play an important role in skin permeability, infrared spectroscopy and differential scanning calorimetry were performed on the stratum corneum of bovine or human skin equivalents grown at different days of air-liquid culture. The symmetric and asymmetric CH(2) stretching vibrations suggested that for all days observed, the intercellular lipids were less organized than those in human skin, irrespective of whether bovine or human collagen was used. Different culture conditions were also tested and the medium without serum and no epidermal growth factor at the air-liquid culture showed results significantly more comparable to human skin. Actually, the thermal behavior of in vitro stratum corneum showed transitions at lower temperatures than human skin. The transition around 80 degrees C, in the form of a lipid-protein complex, was absent. These results showed that the structural arrangement of intercellular lipids and their thermodynamic properties hold a crucial role in the barrier function of the stratum corneum.

Animals↗
PubMed2001

Structure and dynamics of the membrane-embedded domain of LmrAinvestigated by coupling polarized ATR-FTIR spectroscopy and (1)H/(2)H exchange.

Bacterial LmrA, an integral membrane protein of Lactococcus lactis, confers multidrug resistance by mediating active extrusion of a wide variety of structurally unrelated compounds. Similar to its eucaryotic homologue P-gp, this protein is a member of the ATP-binding cassette (ABC) superfamily. Different predictive models, based on hydropathy profiles, have been proposed to describe the structure of the ABC transporters in general and of LmrA in particular. We used polarized attenuated total reflection infrared spectroscopy, combined with limited proteolysis, to investigate the secondary structure and the orientation of the transmembrane segments of LmrA. We bring the first experimental evidence that the membrane-embedded domain of LmrA is composed of transmembrane-oriented alpha-helices. Furthermore, a new approach was developed in order to provide information about membrane domain dynamics. Monitoring the infrared linear dichroism spectra in the course of (1)H/(2)H exchange allowed to focus the recording of exchange rates on the membrane-embedded region of the protein only. This approach revealed an unusual structural dynamics, indicating high flexibility in this antibiotic binding and transport region.

ATP-Binding Cassette Transporters↗
PubMed2001

Bacterial swarming: a biochemical time-resolved FTIR-ATR study of Proteus mirabilis swarm-cell differentiation.

Fourier transform infrared spectroscopy was applied to the study of the differentiation process undergone by Proteus mirabilis. This bacterium exhibits a remarkable dimorphism, allowing the cells to migrate on a solid substratum in a concerted manner yielding characteristic ring patterns. We performed an in situ noninvasive analysis of biochemical events occurring as vegetative cells differentiate into elongated, multinucleate, nonseptate, and hyperflagellated swarm cells. The major findings arising from this study are (i) the real-time monitoring of flagellar filament assembly, (ii) the evidence for de novo synthesis of qualitatively different lipopolysaccharides (LPS) and/or exopolysaccharides (EPS) constituting the slime into which bacteria swarm, and (iii) the alteration in the membrane fatty acid composition with a concomitant 10 degrees C decrease in the gel/liquid crystal phase transition resulting in an elevated membrane fluidity in swarm cells at the growth temperature. The time course of events shows that the EPS-LPS syntheses are synchronous with membrane fatty acid alterations and occur about 1 h before massive flagellar filament assembly is detected. This study not only provided a time sketch of biochemical events involved in the differentiation process but also led to the identification of the major spectral markers of both vegetative and swarm cells. This identification will allow to resolve the time-space structure of P. mirabilis colonies by using infrared microscopy.

Kinetics↗
PubMedDate not supplied

Molecular orientation behavior of silk sericin film as revealed by ATR infrared spectroscopy.

This paper reports the structure-dependent molecular orientation behavior of sericin, an adhesive silk protein secreted by silkworm, Bombyx mori. Although application of sericin as a biomaterial is anticipated because of its unique characteristics, sericin's physicochemical properties remain unclear, mainly because of its vulnerability to heat or alkaline treatment during separation from fibroin threads. This study employed intact sericin obtained from fibroin-deficient mutant silkworm to investigate the relationship between molecular orientation and the secondary structure of sericin. Sericin films were artificially stretched after moistening with aqueous ethanol of various concentrations. The resulting molecular orientation was analyzed using polarized infrared spectroscopy. These analyses indicated that formation of aggregated strands among extended sericin chains induced by ethanol treatment is the key to generating molecular orientation. Strong intermolecular hydrogen bonds are inferred to allow aggregated strands' stretching-force transmission, thereby causing molecular orientation.

Animals↗
PubMed2005

ATR-SEIRAS study of the adsorption of acetate anions at chemically deposited silver thin film electrodes.

The adsorption of acetate anions at silver thin film electrodes has been studied by in-situ infrared spectroscopy experiments with a Kretschmann internal reflection configuration. Stable silver thin films were chemically deposited on germanium substrates. Ex-situ STM images show mean grain sizes ranging from ca. 20 to 90 nm for deposition times between 2 and 20 min, respectively. The thickness of the silver film, measured by AFM, is typically around 10 nm for a deposition time of 10 min and increases up to 50 nm for a deposition time of 20 min. Roughness factors around 2.3 have been obtained for the silver films from the charge involved in lead underpotential deposition (UPD). A noticeable enhancement of the infrared absorption of adsorbed species (SEIRA effect) is observed when the silver films are used as electrodes under internal total reflection conditions. Maximum intensities of the adsorbate bands were observed for a deposition time of 10 min and an angle of incidence around 65 degrees . The potential-dependent infrared spectra of acetate and interfacial water are consistent with previously proposed models involving the existence of weakly hydrogen-bonded water molecules at potentials below the potential of zero charge and the reorientation of water molecules at potentials above the potential of zero charge. Results reported in this work suggest a weak interaction between acetate and water molecules adsorbed at the silver thin film electrodes.

Journal Article↗
PubMed2006

ATR-FTIR measurements and quantum chemical calculations concerning the adsorption and photoreaction of oxalic acid on TiO2.

The adsorption and photoreaction of oxalic acid on the surface of anatase and rutile TiO2 nanoparticles have been studied using a combined experimental and theoretical approach. In the dark, the experimental adsorption reaches an equilibrium state that can be described as a mixture of adsorbed water and oxalic acid molecules, with the latter forming two different surface complexes on anatase and one on rutile particles. When the system is subsequently illuminated with UV(A) light, the surface becomes enriched with absorbed oxalic acid, which replaces photo-desorbed water molecules, and one of the adsorbed oxalic acid structures on anatase is favoured over the other.

Adsorption↗