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Basic concepts of artificial neural network (ANN) modeling and its application in pharmaceutical research.

Artificial neural networks (ANNs) are biologically inspired computer programs designed to simulate the way in which the human brain processes information. ANNs gather their knowledge by detecting the patterns and relationships in data and learn (or are trained) through experience, not from programming. An ANN is formed from hundreds of single units, artificial neurons or processing elements (PE), connected with coefficients (weights), which constitute the neural structure and are organised in layers. The power of neural computations comes from connecting neurons in a network. Each PE has weighted inputs, transfer function and one output. The behavior of a neural network is determined by the transfer functions of its neurons, by the learning rule, and by the architecture itself. The weights are the adjustable parameters and, in that sense, a neural network is a parameterized system. The weighed sum of the inputs constitutes the activation of the neuron. The activation signal is passed through transfer function to produce a single output of the neuron. Transfer function introduces non-linearity to the network. During training, the inter-unit connections are optimized until the error in predictions is minimized and the network reaches the specified level of accuracy. Once the network is trained and tested it can be given new input information to predict the output. Many types of neural networks have been designed already and new ones are invented every week but all can be described by the transfer functions of their neurons, by the learning rule, and by the connection formula. ANN represents a promising modeling technique, especially for data sets having non-linear relationships which are frequently encountered in pharmaceutical processes. In terms of model specification, artificial neural networks require no knowledge of the data source but, since they often contain many weights that must be estimated, they require large training sets. In addition, ANNs can combine and incorporate both literature-based and experimental data to solve problems. The various applications of ANNs can be summarised into classification or pattern recognition, prediction and modeling. Supervised 'associating networks can be applied in pharmaceutical fields as an alternative to conventional response surface methodology. Unsupervised feature-extracting networks represent an alternative to principal component analysis. Non-adaptive unsupervised networks are able to reconstruct their patterns when presented with noisy samples and can be used for image recognition. The potential applications of ANN methodology in the pharmaceutical sciences range from interpretation of analytical data, drug and dosage form design through biopharmacy to clinical pharmacy.

Algorithms↗

Spatial organization and genetic information in brain development.

In the course of brain development neurons acquire qualitative and quantitative biochemical and morphological properties which depend on the position of the cells within the nervous system. In the dimensions tangential to multilayered cell sheets mechanisms contributing to spatial order include induction by adjacent tissue as well as internal generation of morphogenetic fields (presumably by reactions involving autocatalysis and lateral inhibition). In the dimensions across the sheet cells of different types are produced in one layer and sort into another layer, guided presumably by contact mediated cell interaction. Positional and directional cues encoded in the developing brain are essentially involved in axonal guidance and the formation of neuronal connections. In mammals and man, the number of neurons and their connections in the brain is much higher than the number of genes. This is possible because there are repetitive neuronal circuits in the brain, and there is topographic order of connections between different brain areas. For instance, few quantitatively graded markers would suffice for specifying the projection of one area of the nervous system onto another, generating spatial order for a large number of fibers while requiring only a limited amount of genetic information. Higher brain functions, such as learning and memory, may logically require only a neural network consisting of repetitive subunits. On the other hand, it is an evolutionary advantage for an organism to be endowed, from the outset, with a pattern of neural connections which is subtly and quantitatively tuned for efficiency in dealing with the environment, while remaining flexible for change and adaptation in the course of learning.(ABSTRACT TRUNCATED AT 250 WORDS)

Aging↗

[Reflection of the plastic properties of the simplest neuronal associations in statistical characteristics of the spike activity of their elements. Polysynaptically linked neurons].

Changes of crosscorrelation histograms of trains of action potentials and mean interspike intervals of polysynaptically connected neurones were studied by means of mathematical modelling of synaptic neuronal interaction at changes of efficiency of interneuronal monosynaptic connections, at changes of neuronal excitability, and at changes of total action on them of independent disorderly afferent synaptic inflows. Increase of amplitude of the main maximum (minimum) of the normalized crosscorrelation histogram of trains of action potentials accompanied by reduction of mean interspike intervals of both neurones, was shown to be a unsignificant indication of an increase of efficiency of polysynaptic excitatory (inhibitory) connections between the neurones (due to modification of synapses or to a change of the functional state of interneurones).

Action Potentials↗

[Mathematical analysis of the possibility of detecting a correlation between the spike trains of weakly interacting neurons].

The quantity of impulses which is necessary to be registered for detecting a reliable correlation between spike trains of synaptically connected neurons was estimated using a mathematical model. This quantity of impulses was studied as dependent on the weight of connection between neurons (the amplitude of EPSP evoked by a single impulse of an input neuron in an output one), on the intensity of total background excitatory influences upon the output neuron and on its own parameters. The necessary quantity of impulses was 10(7)-10(8) for cells with connection weights, parameters and characteristics of background activity similar to those of real spinal neurons. An increase in the amplitude of unitary EPSP and a decrease in the intensity of the input background impulse train and in duration and amplitude of interspike hyperpolarization of the postsynaptic neuron led to a decrease in the quantity of impulses necessary for detecting a reliable correlation. The possible principles of the construction of the spinal locomotor generator are discussed on the basis of those data.

Animals↗

Functional synaptic connections among respiratory neurons.

This presentation focuses on the application of methods to determine functional connections between neurons in the respiratory network of adult decerebrate rats. We employ a general network investigation paradigm that first examines the intracellular recordings of a respiratory neuron and then determines which neurons synapse with it to produce the observed membrane potential changes. It is used to pursue the source of respiratory excitation and inhibition from its arrival at phrenic motoneurons to respiratory neurons in the medulla, and then examine some of the interactions among these neurons that shape their patterns of activity. Findings include a demonstration that phrenic motoneuron activity is determined by excitation from medullary inspiratory premotor neurons and inhibition by Bötzinger complex expiratory neurons, and that the latter neurons inhibit both medullary inspiratory premotor neurons and themselves. We conclude that these functional interconnections explain the activity patterns of some respiratory neurons, but the connections between neurons thought to be involved in rhythm generation remain to be demonstrated in adult rats.

Animals↗

Differential locations in the midbrain of distinct groups of vertical eye movement-related neurones in cat: their projections and direct connections with oculomotor neurones.

The present study was undertaken to investigate the firing patterns, location and projections of vertical eye movement-related neurones in the Forel's field H (FFH), the interstitial nucleus of Cajal (INC), and reticular formation of the mesodiencephalic junction (MDJ) in chronically prepared alert cats. A total of 456 neurones in the medial MDJ with firing closely related to vertical eye movements was examined using antidromic microstimulation and spike-triggered averaging technique. On the basis of their firing patterns, these neurones were classified into five groups, i.e. burst neurones (BNs), burst-tonic neurones (BTNs), tonic neurones (TNs), augmenting neurones (ANs) and pause neurones (PNs). BNs were located mainly in the dorsomedial part of the FFH. Most of TNs were found more caudally than BNs. BTNs and PNs were located further caudally, within the INC and nearby reticular formation. ANs were located mainly in the dorsolateral part of the FFH. Both medium-lead BNs (MLBNs) and BTNs projected to the inferior rectus (IR) subdivision of the oculomotor nucleus on both sides. MLBNs projected to the trochlear nucleus as well through collateral branches of the axon projecting to the oculomotor nucleus. Downward and upward MLBNs made direct excitatory and inhibitory connections, respectively, with IR motorneurones. These results suggest that many kinds of neurones in the paramedian regions of MDJ play a significant role in the genesis of vertical eye movements.

Animals↗

Thalamocortical connections of rat posterior parietal cortex.

The neuronal connections of rat posterior parietal cortex (PPC) have been examined using retrograde fluorescent axonal tracers. We have found that PPC receives thalamic input predominantly from the lateral posterior and lateral dorsal nuclei, and not from the ventrobasal nucleus, which projects to the rostrally adjacent hindlimb cortex, or from the dorsal lateral geniculate nucleus, which projects to the caudally adjacent visual association area. PPC has reciprocal corticocortical connections with medial agranular cortex and orbital cortex; together, these three cortical areas may function as a network for directed attention in rats.

Afferent Pathways↗

Promoting and directing axon outgrowth.

Establishment of appropriate neuronal connections during development and regeneration requires the extension of processes that must then grow in the correct direction, find and recognize their targets, and make synapses with them. During development, embryonic neurons gradually establish central and peripheral connections in an evolving cellular environment in which neurotrophic factors are provided by supporting and target cells that promote neuronal survival, differentiation, and process outgrowth. Some cells also release neurotropic factors that direct the outgrowth of neuronal processes toward their targets. Following development the neurotrophic requirements of some adult neurons change so that, although they respond to neurotrophic factors, they no longer require exogenous neurotrophins to survive or to extend processes. Within the central nervous system (CNS), the ability of neurons to extend processes is eventually lost because of a change in their cellular environment from outgrowth permissive to inhibitory. Thus, neuronal connections that are lost in the adult CNS are rarely reestablished. In contrast, the environment of the adult peripheral nervous system fosters process outgrowth and synapse formation. This article discusses the neurotrophic requirements of embryonic and adult neurons, as well as the importance of neurotropic factors in directing the outgrowth of regenerating adult axons.

Animals↗

Early behavior characteristics and sleep disturbance in Rett syndrome.

This paper reviews the early features of Rett syndrome (RTT). The behavioral characteristics of RTT were analyzed retrospectively by taking history and asking about early infancy behaviors. The earliest behavioral characteristics are thought to be autistic features and hypotonia of trunkal muscles. Analysis of sleep-wake rhythm and all-night polysomnography suggested that the initial lesion is serotonergic and noradrenargic hypofunction at brainstem level. Dopaminergic (DA) hypofunction associated with DA receptor supersensitivity follows as the brain matures. Characteristic symptoms developing at specific age ranges are based on the neuronal connections of the brainstem aminergic neurons and DA neurons with the pedunculo-pontine nuclei, projecting to specific cortical areas.

Child↗

Comparative distribution of nicotinic receptor subtypes during development, adulthood and aging: an autoradiographic study in the rat brain.

The distribution in the rat brain of high affinity nicotinic heteromeric acetylcholine receptors and of low affinity nicotinic, alpha7-containing, homomeric receptors was studied using in vitro light microscopic autoradiography. As ligands, we used [3H]epibatidine, or [125I]epibatidine, and [125I]alpha-bungarotoxin, respectively. In adult animals, the two types of binding sites were widely distributed in many different brain structures, including the brainstem, cerebellum, mesencephalic structures, limbic system and cortex, but their anatomical distribution differed markedly. Only in rare instances could a co-localization be observed, for example in the superficial layer of the superior colliculus. In developing animals, both types of labeling were strongly expressed during embryonic and postnatal phases. Their distributions were qualitatively similar to those observed in adult animals, with a few noticeable exceptions in the cerebral cortex, hippocampus and brain stem. In aging animals, neither the distribution nor the density of nicotinic binding sites was significantly altered. Our conclusions are the following. (a) There is little overlap in the distribution of heteromeric and alpha7-containing homomeric nicotinic receptors in the rat brain. (b) The abundance of neuronal nicotinic receptors during embryonic and postnatal development suggests that they may play a role in the establishment of neuronal connectivity. (c) The expression of neuronal nicotinic receptors is unaltered in middle aged animals, suggesting that in the rat these receptors do not play any major role in aging process.

Age Factors↗

Spike-timing dynamics of neuronal groups.

A neuronal network inspired by the anatomy of the cerebral cortex was simulated to study the self-organization of spiking neurons into neuronal groups. The network consisted of 100 000 reentrantly interconnected neurons exhibiting known types of cortical firing patterns, receptor kinetics, short-term plasticity and long-term spike-timing-dependent plasticity (STDP), as well as a distribution of axonal conduction delays. The dynamics of the network allowed us to study the fine temporal structure of emerging firing patterns with millisecond resolution. We found that the interplay between STDP and conduction delays gave rise to the spontaneous formation of neuronal groups--sets of strongly connected neurons capable of firing time-locked, although not necessarily synchronous, spikes. Despite the noise present in the model, such groups repeatedly generated patterns of activity with millisecond spike-timing precision. Exploration of the model allowed us to characterize various group properties, including spatial distribution, size, growth, rate of birth, lifespan, and persistence in the presence of synaptic turnover. Localized coherent input resulted in shifts of receptive and projective fields in the model similar to those observed in vivo.

Action Potentials↗

In vitro 2-D networks of neurons characterized by processing the signals recorded with a planar microtransducer array.

The purpose of this paper is to extensively analyze and utilize the key features that characterize the recently available electrophysiological technique of growing selected populations of neurons on planar substrate microelectrode arrays. This experimental configuration is first simulated by modeling the signal transduction operated by an array of microtransducers coupled to a network of Hodgkin-Huxley-like neurons, connected to each other with given levels of synaptic strength. Signal processing tools are then described and validated by identifying the various degrees of connectivity previously introduced into the simulated network. Finally, these software tools are utilized to characterize the activity and identify the synaptic connectivity of networks of cultured neurons extracted from dorsal root ganglia (DRG) of chick embryos and exposed to synapse inhibiting/reinforcing ions. As a result, correlations between various regimens of electrophysiological activity and synaptic strength are obtained.

Algorithms↗

Precision of pulse-coupled networks of integrate-and-fire neurons.

Some sensory tasks in the nervous system require highly precise spike trains to be generated in the presence of intrinsic neuronal noise. Collective enhancement of precision (CEP) can occur when spike trains of many neurons are pooled together into a more precise population discharge. We study CEP in a network of N model neurons connected by recurrent excitation. Each neuron is driven by a periodic inhibitory spike train with independent jitter in the spike arrival time. The network discharge is characterized by sigmaW, the dispersion in the spike times within one cycle, and sigmaB, the jitter in the network-averaged spike time between cycles. In an uncoupled network sigmaB approximately = 1/square root(N) and sigmaW is independent of N. In a strongly coupled network sigmaB approximately = 1/square root(log N) and sigmaW is close to zero. At intermediate coupling strengths, sigmaW is reduced, while sigmaB remains close to its uncoupled value. The population discharge then has optimal biophysical properties compared with the uncoupled network.

Action Potentials↗

[Immunolocalization of parvalbumin in two glutamatergic cell types of the guinea pig cochlea: inner hair cells and spinal ganglion neurons].

Immunoreactions to a monoclonal antibody raised against parvalbumin, a calcium-binding protein, have been detected in the inner hair cells of the organ of Corti and in the spiral ganglion neurons connected to them (type I neurons). Both cell types probably use an excitatory amino acid as a neurotransmitter (glutamate and/or aspartate). No immunoreactivity was found within the second sensory cell type (outer hair cells) nor in the olivocochlear (efferent) fibers or endings in the cochlea. In the central nervous system, parvalbumin may be involved in calcium-dependent mechanisms leading to neurotransmitter release. It could thus be hypothesized that parvalbumin also have similar implications at the level of the inner hair cell and type I neuron synapses. Additional functions could also be hypothesized for this protein in the cochlea. Within the inner hair cells, parvalbumin may be involved in the ionic regulation following potassium entry during the transduction process. Within type I neurons, by buffering sudden increases in the intracellular calcium concentration, it may allow an adaptation of the firing rate to variations in the intensity of sound stimuli.

Animals↗

Elements of dynamics IV: neuronal metaphors--probing neurobiology for psychodynamic meaning.

The essentiality of neuronal connections can be seen by the frenetic activity which dissociated neurons in culture exhibit in an attempt to re-establish functional connections. Through these interactions, neurons gain access to trophic factors, such as nerve growth factor, which determine whether they live or die. Connection and successful interaction with others is thus a biological imperative for neurons. The properties of a given neuron are determined both by the inherent genetic program and by changes in its genetic expression induced by cell-to-cell interaction. In other words, plasticity of neuronal function reflects not only cellular properties but is a consequence of its relationships. Since it is reasonable to assume that the emotional experience of organisms derives from the biological properties of their brain cells, it seems fruitful to probe the basic biology of these cells for metaphors that might yield insight into psychological properties. Clinical examples illustrate how using these concepts can enlighten the processes by which psychotherapeutic change can occur. In addition, perhaps understanding the underlying neurobiology can add scientific legitimacy to clinical psychodynamic work, and can reduce the tension between "biological" and "psychological" psychiatry. These ideas might be used to develop a new framework to strengthen the teaching of psychotherapy.

Brain↗

Maternal alcohol consumption before pregnancy and ultrastructure of neurons and interneuronal connections in rat offspring.

The ultrastructure of neurons and interneuronal connections in sensorimotor cortex have been studied in the offspring at 14- and 21-day-old female rats damaged by alcohol intoxication before pregnancy. We found three categories of ultrastructural changes in cortical neurons and interneuronal connections: delayed maturation of these structures, dystrophic and destructive changes and a signs of compensatory-adaptive processes. The first two categories of neuronal changes more marked at 14 days after birth. Later compensatory-adaptive changes become more significant, but dystrophic and destructive neuronal changes still remained. It is believed, that prenatal hypoxia-ischemia following alcohol consumption by female rats before pregnancy plays an important role in the pathogenesis of alcohol damage in cortical neurons and interneuronal connections in the offspring.

Alcohol Drinking↗

CNR/Pcdhalpha family in subplate neurons, and developing cortical connectivity.

The cadherin-related neuronal receptor (CNR)/protocadherin (Pcdh) alpha family is one of the diverse protocadherin families identified as a candidate diversified membrane-associated component regulating the formation of neuronal connectivity. However, its expression during neural circuit formation has not been examined in detail. Here, we used a conserved sequence to study the expression of this protein family during the development of neocortical connectivity, by immunohistochemistry and in situ hybridization. The proteins were detected in developing thalamocortical and corticofugal axons, and in subplate neurons, which pioneer these axon tracts. The expression in subplate neurons was confirmed by birth-date labeling with BrdU, and by examination in homozygous reeler mice. This pattern of CNR/Pcdhalpha expression suggests its involvement in the development of neocortical connectivity.

Animals↗

Seasonal plasticity of synaptic connections between identified neurones in Lymnaea.

Here we investigate the synaptic connectivity of the giant dopamine containing neurone (RPeDI) of Lymnaea stagnalis during the winter months, in wild and laboratory bred animals. RPeD1 is one of the three neurones forming the respiratory central pattern generator (CPG) in Lymnaea and initiates ventilation under normal circumstances. Many of the follower cells of RPeD1 are ventilatory motor neurones. The connections of RPeD1 to its follower cells were investigated using standard intracellular recording techniques and dopamine was applied to the follower cells using a puffer pipette. During February and early March, RPeD1 was functionally disconnected from its follower cells, but connections reappeared towards the end of March. Most functionally disconnected cells failed to respond to applied dopamine, consistent with the hypothesis that there is down regulation of dopamine receptors in the follower cells of RPeD1 in the winter months. Behaviourally, Lymnaea that survive the winter, are not active at this time and do not indulge in lung ventilation, but stay quiescent. Thus functional disconnection of neurones from the CPG may be either a cause or a consequence of this change in behaviour.

Animals↗