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PubMed2000

The effect of hair bundle shape on hair bundle hydrodynamics of inner ear hair cells at low and high frequencies.

The relationship between size and shape of the hair bundle of a hair cell in the inner ear and its sensitivity at asymptotically high and low frequencies was determined, thereby extending the results of an analysis of hair bundle hydrodynamics in two dimensions (Freeman and Weiss, 1990. Hydrodynamic analysis of a two-dimensional model for micromechanical resonance of free-standing hair bundles. Hear. Res. 48, 37-68) to three dimensions. A hemispheroid was used to represent the hair bundle. The hemispheroid had a number of advantages: it could represent shapes that range from thin, pencil-like shapes, to wide, flat, disk-like shapes. Also analytic methods could be used in the high frequency range to obtain an exact solution to the equations of motion. In the low frequency range, where an approximate solution was found using boundary element methods, the sensitivity of the responses of hair cells was mainly proportional to the cube of the heights of their hair bundles, and at high frequencies, the sensitivity of the hair cells was mainly proportional to the inverse of their heights. An excellent match was obtained between measurements of sensitivity curves in the basillar papilla of the alligator and bobtail lizards and the model's predictions. These results also suggest why hair bundles of hair cells in vestibular organs which are sensitive to low frequencies have ranges of heights that are an order of magnitude larger than the range of heights of hair bundles of hair cells found in auditory organs.

Acoustic Stimulation↗
PubMed1997

Pulse duplicator hydrodynamics of four different bileaflet valves in the mitral position.

The hydrodynamic performance of four different types of bileaflet heart valve was tested both in steady flow conditions and in a newly designed computerized artificial left heart system. Four 29-mm valves, manufactured by either St. Jude Medical, CarboMedics, ATS Medical or Medtronic Parallel were studied under a steady state and in pulsatile conditions by pressure and flow recording and colour Doppler echocardiography in the 'mitral position' at rest and at exercise (cardiac output range 4-30 l/Min). In the steady state, significant differences were measured at peak flows of 30 l/min, with mean (s.d.) increasing pressure drops (mmHg) recorded at 3.48(0.13) (St. Jude Medical), 3.80(0.11) (Medtronic Parallel), 4.31(0.06) (ATS Medical) (P < 0.005), and 4.78(0.06) (Carbo Medics), (P < 0.005). The mean ratio of the closing volume to the stroke volume was comparable for all valves despite one faulty sample. In the pulsatile state the effective orifice area calculated by the Continuity and Gorlin equations decreased from 2.10(0.04) (ATS Medical), 1.95(0.05) (St. Jude Medical), 1.87(0.03) (Carbo Medics) to 1.67(0.02) (Medtronic Parallel) independently of method used. No significant difference was found in the mean ratio of the regurgitant volume to the stroke volume. The performance index, defined as the ratio of effective orifice area to geometric orifice area ranks the valves in the order ATS Medical (0.44), St. Jude Medical (0.43), Carbo Medics (0.41) and Medtronic Parallel (0.38). Regurgitation visible on colour Doppler echo was a mere consequence of the working principle of the bileaflet valves in the mitral position and was by no means hydrodynamically important nor representative of severe insufficiencies. Differences between the valve types were notable under severe conditions, such as high peak flow.

Blood Pressure↗
PubMed1997

The influence of free hand suturing technique and zero pressure fixation on the hydrodynamic function of aortic root and aortic valve leaflets.

OBJECTIVE: There is increasing interest in the use of stentless porcine bioprostheses implanted by the free hand suturing technique. However, preservation of the normal valve geometry and function is a matter of concern. This study has been conducted to investigate the influence of free hand insertion on the hydrodynamic function of the aortic valve. In particular, free sewn valves have been compared to whole root replacements for both fresh valves and zero pressure fixed bioprostheses. METHODS: Four sets of porcine aortic roots with six aortic roots in each set consisting of (A) fresh aortic roots, (B) fresh aortic valve inserted by free hand suturing technique in fresh aortic valve fixed in glutaraldehyde under zero pressure, inserted by free hand suturing technique in fresh aortic roots, and (D) aortic roots fixed in glutaraldehyde under zero pressure, were studied. Hydrodynamic function and leaflet bending deformations were analysed in a modified pulsatile flow simulator which incorporates the elastic aortic roots. RESULTS: The glutaraldehyde-treated roots were found to be less distensible than the fresh aortic roots, with a mean dilatation of only 8% compared with 43% for the fresh roots at 120 mmHg pressure. The other two groups of free sewn valves showed reasonably good dilatation of 38%. There was no significant difference between the two sets. The hydraulic effective orifice area (EOA) of the valve, which was derived from the flow and pressure measurements, was divided by the actual orifice area for the annulus to arrive at the performance index. The performance index for glutaraldehyde-fixed aortic root was the lowest, with an index of 0.47 compared with 0.91 for that of fresh roots, 0.61 for the fresh valve in fresh root and 0.50 for the glutaraldehyde-treated valve in fresh root. The mean pressure difference during the peak flow also associated the same order with 12 mmHg for the glutaraldehyde-fixed roots, 1.8 mmHg for the fresh roots, 5.3 mmHg for the fresh valve in fresh root and 7.7 mmHg for the glutaraldehyde-treated valve in fresh root. The free hand suturing technique altered the leaflet geometry and caused increased open leaflet bending deformations compared to the fresh root. Both groups of free sewn valves behaved better than the zero pressure fixed root. CONCLUSIONS: Alteration in leaflet biomechanics is likely to influence long-term valve durability.

Animals↗
PubMed2000

Mid-term follow-up after percutaneous hydrodynamic thrombectomy in lower limb ischemia: initial experience with two-dimensional MR imaging and three-dimensional MR angiography.

PURPOSE: To assess noninvasively mid-term patency, reocclusion, and mid-term changes of the arterial wall after percutaneous hydrodynamic thrombectomy in patients with acute lower limb ischemia using magnetic resonance (MR) imaging/MR angiography (MRA). MATERIALS AND METHODS: Arterial wall and luminal changes were evaluated in 16 patients (10 men, six women; mean age, 70 years), with a minimum follow-up of 12 months after percutaneous thrombectomy with a hydrodynamic catheter for acute lower limb ischemia (embolic, n = 5; thrombotic, n = 11). Adjunctive PTA was performed in 44%. The mean follow-up was 23 months +/- 7.6 (range, 12-33 months). MR imaging and MRA were performed on a 1.0 T system using an extremity coil and two-dimensional (2D) time-of-flight, turbo spin echo, 2D gradient echo, and contrast enhanced three-dimensional (3D) gradient echo sequences. RESULTS: In one patient, a complete reocclusion was noted and, in two patients, a hemodynamically insignificant restenosis (< or = 50%) was identified with MR imaging. This was in accordance with color flow duplex sonography, physical examination, ankle/brachial index measurements, and the treadmill test. The MR morphometry documented an increase of the entire vessel area from 48.9 mm2 +/- 3.3 (control segments) to 55.5 mm2 +/- 2.8 at the treated segments (+13.3%; P < .05). The vessel wall area increased from 31.7 mm2 +/- 1.8 to 39.4 mm2 +/- 2.3 (+24.4%; P < .05). The mean area stenosis grade was 12%. CONCLUSION: MR imaging with use of morphometric analysis is a possible tool to noninvasively determine the mid-term patency and restenosis/reocclusion and remodeling process after percutaneous thrombectomy and other interventional procedures.

Aged↗
PubMed1999

Experimental treatment of early chronic iliac vein thrombosis with a modified hydrodynamic thrombectomy catheter: preliminary animal experience.

PURPOSE: To evaluate the efficacy and safety of a new hydrodynamic catheter for removal of chronic iliac vein thrombus. METHODS: Unilateral iliac vein thrombosis was induced in seven pigs by combining permanent coil and temporary balloon occlusion. Thrombectomy was performed with a new hydrodynamic catheter (10 F S.E.T.) 3 days after thrombus induction. After thrombectomy, the animals were killed and the iliac veins were examined histologically. RESULTS: Complete thrombectomy (100% thrombus removal) was achieved in three of seven animals, 75% removal in three of seven animals, and only 30% removal in one animal. The average thrombus removal was 75%. Successful re-establishment of flow was achieved in five of seven cases. Histologically, the thrombi were partially organized, meeting the histologic criteria for early chronic venous thrombosis. Minor venous wall damage caused by the thrombectomy procedure without acute hemodynamic consequences was observed in four of seven cases. CONCLUSION: The 10-F S.E.T. catheter was reasonably effective in removing chronic iliac vein thrombus with no hemodynamically significant complications.

Animals↗
PubMed2001

Computational hydrodynamics of animal swimming: boundary element method and three-dimensional vortex wake structure.

The slender body theory, lifting surface theories, and more recently panel methods and Navier-Stokes solvers have been used to study the hydrodynamics of fish swimming. This paper presents progress on swimming hydrodynamics using a boundary integral equation method (or boundary element method) based on potential flow model. The unsteady three-dimensional BEM code 3DynaFS that we developed and used is able to model realistic body geometries, arbitrary movements, and resulting wake evolution. Pressure distribution over the body surface, vorticity in the wake, and the velocity field around the body can be computed. The structure and dynamic behavior of the vortex wakes generated by the swimming body are responsible for the underlying fluid dynamic mechanisms to realize the high-efficiency propulsion and high-agility maneuvering. Three-dimensional vortex wake structures are not well known, although two-dimensional structures termed 'reverse Karman Vortex Street' have been observed and studied. In this paper, simulations about a swimming saithe (Pollachius virens) using our BEM code have demonstrated that undulatory swimming reduces three-dimensional effects due to substantially weakened tail tip vortex, resulting in a reverse Karman Vortex Street as the major flow pattern in the three-dimensional wake of an undulating swimming fish.

Animals↗
PubMed2003

Expression of short-chain acyl-CoA dehydrogenase (SCAD) proteins in the liver of SCAD deficient mice after hydrodynamic gene transfer.

Hydrodynamic administration of naked DNA was investigated as a method for in vivo expression of variant proteins involved in metabolic diseases, using short-chain acyl-CoA dehydrogenase (SCAD) deficient mice (BALB/cByJ) as a model. Human SCAD wild-type (WT) and two disease-associated SCAD variant proteins (R147W and G185S) were expressed in mouse liver by means of single injections of SCAD cDNA under the control of a ubiquitin promoter. SCAD expression was detected two days after injection. The activity decreased after the first week but continued to be detectable for at least 31 days after injection. Analysis of SCAD WT, R147W, and G185S proteins in liver cells showed that all three SCAD proteins were processed to the mature protein in mitochondria. Concomitantly, the SCAD activity in BALB/cByJ mice injected with SCAD WT, G185S, and R147W cDNA was 30, 39, and 13%, respectively, of the level in normal mice. A tendency to a reduction in the level of butyrylcarnitine in blood was observed although only approximately 5% of the liver cells expressed the SCAD protein. Thus, hydrodynamic gene transfer allows for functional testing of SCAD variant proteins in vivo.

Animals↗
PubMed2002

Wastewater treatment: a novel energy efficient hydrodynamic cavitational technique.

A novel method of treating a dye solution has been studied by hydrodynamic cavitation using multiple hole orifice plates. The present work deals with the effect of geometry of the multiple hole orifice plates on the degradation of a cationic dye rhodamine B (rhB) solution. The efficiency of this technique has been compared with the cavitation generated by ultrasound and it has been found that there is substantial enhancement in the extent of degradation of this dye solution using hydrodynamic cavitation. Large-scale operation coupled with better energy efficiency makes this technique a viable alternative for conventional cavitational reactors.

Journal Article↗
PubMed2006

[Effects of hydrodynamic on aggregates formation, growth and metabolism of HEK293 cells in suspension culture].

By using the size distribution of cell aggregates, viable cell density, cell viability, specific consumption rate of glucose (q(glc)), specific production rate of lactate (q(lac)) and lactate transform rate (Y(lac/glc)) as the evaluation indexes, the effects of hydrodynamic on aggregates formation, growth and metabolism of HEK293 cells in suspension culture were examined in 250mL spinner-flasks by setting the agitation rates at 25, 50, 75 and 100r/min, respectively. It was found that agitation plays an important role in HEK293 cell aggregates formation and cell aggregates size distribution. After 7d cultivation in spinner-flasks operated at 50r/min and 75r/min, the average diameter of HEK293 cell aggregates was 201 microm and 175 microm, respectively, with the fraction of aggregates larger than 225 microm less than 10%. The cell viability was kept above 90% with the metabolic indexes, including q(glc), q(lac) and Y(lac/glc) kept constant. These results demonstrated that hydrodynamic derived from the proper agitation play a decisive role in controlling the formation and size distribution of HEK293 cell aggregates, and provided sufficient mass transfer to support the normal growth and metabolism of HEK293 cells in suspended aggregates.

Bioreactors↗
PubMed1991

Hydrodynamic relaxation in flow field-flow fractionation using both split and frit inlets.

Two means are described for achieving hydrodynamic relaxation and thus avoiding the stopflow injection procedure in field-flow fractionation (FFF): split flow injection and frit inlet injection. The advantages, disadvantages, and the theoretical basis of these procedures are discussed. Incremental band broadening due to the final relaxation step is examined theoretically and shown to be negligible when the flow rate of the sample inlet substream is small compared to the total channel flow rate. The optimization of the sample inlet flow rate is discussed. Experimental results for both injection procedures are reported for flow/steric (or hyperlayer) FFF applied to latex standards, confirming the expected trends. However, closer examination shows that the observed incremental band broadening associated with hydrodynamic relaxation is somewhat larger than the value predicted.

Chemical Phenomena↗
PubMed2000

Column efficiency and separation of DNA fragments using slalom chromatography: hydrodynamic study and fractal considerations.

Novel equations (Guillaume Y. C.; et al. Anal. Chem. 2000, 72, 853) were developed to describe the large double-stranded DNA molecule retention in slalom chromatography (SC). These equations were applied for the first time to model both the "apparent selectivity" and the resolution between two eluted DNA fragments on a chromatogram. A study of the column efficiency corroborated the fact that slalom chromatography is not based on an adsorption or equilibrium phenomenon, but can be attributed to a hydrodynamic phenomenon. Using a combination of the dynamics of DNA fragment progression in the column and fractal considerations, it was shown that the apparent selectivity depends both on the DNA fragment sizes and mobile-phase flow rate and therefore a balance between two hydrodynamic regimes. A chromatographic response function was also used to obtain the most efficient separation conditions for a mixture of DNA fragments in a minimum analysis time. The chromatographic data confirmed that in SC the flow rate can increase or maintain the separation efficiency with an associated decrease in the analysis time. This constitutes an attractive outcome in relation to the classical chromatographic separation.

Chromatography↗
PubMed1993

Examination of microdialysis sampling in a well-characterized hydrodynamic system.

The use of microdialysis sampling was examined in a well-characterized hydrodynamic system. A cross-flow microdialysis probe was designed in which the flow of both the dialysis perfusion solution and the sample solution could be carefully controlled. Dialysis membranes of cellulose (Cuprophan), cellulose acetate, and polyacrylonitrile (PAN) were examined in this system using hydroquinone as the test analyte. The permeability of the membranes to hydroquinone ranged from 1.72 x 10(-6) cm2/s for PAN to 2.97 x 10(-7) cm2/s for cellulose acetate. Determination of the dialysis fibers' recovery as a function of the sample flow velocity resulted in a rapid increase in recovery with increase in flow velocity. The recovery plateaued at high sample velocity. These results show that at low sample velocity diffusion through the sample solution is the rate-limiting step in recovery while at higher velocity transport through the membrane becomes rate limiting. Recovery for all three membrane types plateaued above sample velocities of 0.211 cm/s. This is well below the velocity of most biological fluids in which microdialysis sampling has been applied. This result supports previous reports that an in vitro calibration of microdialysis probes is appropriate for use in hydrodynamic environments in vivo such as the blood and bile.

Chromatography, Liquid↗
PubMed2002

A chip system for size separation of macromolecules and particles by hydrodynamic chromatography.

For the first time, a miniaturized hydrodynamic chromatography chip system has been developed and tested on separation of fluorescent nanospheres and macromolecules. The device can be applied to size characterization of synthetic polymers, biopolymers, and particles, as an attractive alternative to the classical separation methods such as size exclusion chromatography or field-flow fractionation. The main advantages are fast analysis, high separation efficiency, negligible solvent consumption, and easy temperature control. The prototype chip contains a rectangular flat separation channel with dimensions of 1 microm deep and 1000 microm wide, integrated with a 300-pL injector on a silicon substrate. The silicon microtechnology provides precisely defined geometry, high rigidity, and compatibility with organic solvents or high temperature. All flows are pressure driven, and a specific injection system is employed to avoid excessive sample loading times, demonstrating an alternative way of lab-on-a-chip design. Separations obtained in 3 min show the high performance of the device and are also the first demonstration of flat channel hydrodynamic chromatography in practice.

Chromatography, Liquid↗
PubMed2004

Hydrodynamic dispersion due to combined pressure-driven and electroosmotic flow through microchannels with a thin double layer.

The hydrodynamic dispersion of a nonadsorbed and nonelectrolyte solute is considered for the case of a flow driven through a straight microchannel by pressure and electric potential differences. The analysis is conducted using a thin double layer approximation developed in the previous paper (Zholkovskij, E. K.; Masliyah, J. H.; Czarnecki, J. Anal. Chem. 2003, 75, 901-909). On the basis of this approach, an expression is derived to address the dispersion coefficient for arbitrary electrokinetic potential, electrolyte type, and cross-section geometry. In the derived expression, the influence of cross-section geometry manifests itself through the channel hydrodynamic radius and through three dimensionless geometrical factors. The procedure for obtaining the geometrical factors is presented for an arbitrary cross-section geometry. The geometrical factors are evaluated for several examples of cross section: (i) unbounded parallel planes; (ii) circle; (iii) annulus; (iv) ellipse; (v) rectangle. The dependency of the dispersion coefficient on different parameters is discussed. It is shown that the dependencies are substantially affected by the cross-section geometry, electrolyte type, and electrokinetic potential.

Journal Article↗
PubMed2006

Achieving uniform mixing in a microfluidic device: hydrodynamic focusing prior to mixing.

We describe a microfluidic mixer that is well-suited for kinetic studies of macromolecular conformational change under a broad range of experimental conditions. The mixer exploits hydrodynamic focusing to create a thin jet containing the macromolecules of interest. Kinetic reactions are triggered by molecular diffusion into the jet from adjacent flow layers. The ultimate time resolution of these devices can be restricted by premature contact between co-flowing solutions during the focusing process. Here, we describe the design and characterization of a mixer in which hydrodynamic focusing is decoupled from the diffusion of reactants, so that the focusing region is free from undesirable contact between the reactants. Uniform mixing on the microsecond time scale is demonstrated using a device fabricated by imprinting optical-grade plastic. Device characterization is carried out using fluorescence correlation spectroscopy (FCS) and two-photon microscopy to measure flow speeds and to quantify diffusive mixing by monitoring the collisional fluorescence quenching, respectively. Criteria for achieving microsecond time resolution are described and modeled.

Microfluidics↗
PubMed2000

Mechanism of DNA hydrodynamic separation in chromatography.

An alternative chromatographic procedure for the separation of large double-stranded DNA molecules was discovered recently and called "slalom chromatography". This fractionation is based on a new hydrodynamic process that is determined by the progression of the mobile-phase flow through the interstitial spaces created between the highly packed particles inside the column. Here, the separation is treated as the result of a slowing down of the large double-stranded DNA fragments in relation to their size with the flow direction changing around the particles. A model, based on the concept derived from the reorientation time of macromolecules, was adequate to describe the hydrodynamic phenomenon. This model constitutes an attractive tool to enhance the expansion of this chromatographic procedure and provide valuable information on the dynamic behavior of biological polymers.

Bacteriophage lambda↗
PubMed2000

Hydrodynamic flow profiling in microchannel structures by single molecule fluorescence correlation spectroscopy

In this paper we demonstrate high spatial resolution hydrodynamic flow profiling in silicon wafer based microchannels using single molecule fluorescence correlation spectroscopy (FCS). We have used confocal fluorescence microscopy to detect single tetramethylrhodamine (TMR-4-dUTP) biomolecules traversing a approximately 1 fL volume element defined by an argon laser beam focus. By elevating a (approximately 10(-10) M) reservoir of diluted analyte, a continuous hydrodynamic flow through the microstructure could be accomplished. The microchannel was then scanned with a diffraction-limited focus in approximately 1-microm steps in both the vertical and the horizontal directions to determine the flow profile across a 50 x 50 microm2 channel. The flow profile measured was parabolic in both dimensions, thereby showing a Poiseuille laminar flow profile. Future microstructures can hereby be nondestructively investigated with the use of high spatial resolution confocal correlation microscopy.

Journal Article↗
PubMed1994

Following the rotational trajectory of the principal hydrodynamic frame of a protein using multiple probes.

A generalized set of fluorescence polarization intensities and electron paramagnetic resonance (EPR) spectra from multiple fluorescent and EPR probes of a specific site on an oriented and immobilized protein element in a biological assembly, combined with anisotropic rotational relaxation studies of the purified and labeled protein element freely rotationally diffusing in solution, are used to determine the angular distribution of the principal hydrodynamic frame of the protein element in the biological assembly. This multiprobe analysis method removes all of the basic ambiguities in the measured principal frame angular distribution introduced by limitations or symmetries intrinsic to standard fluorescence polarization intensity ratios and EPR spectra. The angular distribution of the principal frame is also more highly resolved than that previously reported for multiprobe determinations of probe angular distributions and is more useful for determining biological mechanisms because it indicates the order and orientation of the protein element rather than that of the extrinsic probe. Application of this method to the determination of the principal hydrodynamic frame distribution of myosin cross-bridges in muscle fibers in four physiological states, including the active isometric state, demonstrates the method's practicality by indicating the path of cross-bridge orientation changes during the active cycle [Ajtai, Toft, & Burghardt (1994) Biochemistry (following paper in this issue)].

Electron Spin Resonance Spectroscopy↗