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Chemical treatment of Escherichia coli: 3. Selective extraction of a recombinant protein from cytoplasmic inclusion bodies in intact cells.

In previous parts of this study we developed procedures for the high-efficiency chemical extraction of soluble and insoluble protein from intact Escherichia coli cells. Although high yields were obtained, extraction of recombinant protein directly from cytoplasmic inclusion bodies led to low product purity due to coextraction of soluble contaminants. In this work, a two-stage procedure for the selective extraction of recombinant protein at high efficiency and high purity is reported. In the first stage, inclusion-body stability is promoted by the addition of 15 mM 2-hydroxyethyldisulfide (2-HEDS), also known as oxidized beta-mercaptoethanol, to the permeabilization buffer (6 M urea + 3 mM ethylenediaminetetraacetate [EDTA]). 2-HEDS is an oxidizing agent believed to promote disulfide bond formation, rendering the inclusion body resistant to solubilization in 6 M urea. Contaminating proteins are separated from the inclusion-body fraction by centrifugation. In the second stage, disulfide bonds are readily eliminated by including reducing agent (20 mM dithiothreitol [DTT]) into the permeabilization buffer. Extraction using this selective two-stage process yielded an 81% (w/w) recovery of the recombinant protein Long-R3-IGF-I from inclusion bodies located in the cytoplasm of intact E. coli, at a purity of 46% (w/w). This was comparable to that achieved by conventional extraction (mechanical disruption followed by centrifugation and solubilization). A pilot-scale procedure was also demonstrated using a stirred reactor and diafiltration. This is the first reported study that achieves both high extraction efficiency and selectivity by the chemical treatment of cytoplasmic inclusion bodies in intact bacterial cells.

Bioreactors↗

Application of selective extraction to the study of iron species present in diet and rat gastrointestinal tract contents.

Iron speciation in rodent diet and rat gastrointestinal tract lumen during dietary digestion and absorption was investigated with a novel selective extraction technique. Five Fe fractions were identified, namely exchangeable (soluble in 1 M-magnesium chloride), carbonate-bound (soluble in mild acid), oxide-bound (soluble in hydroxylamine-acetic acid), organic-bound (soluble after treatment with peroxide in nitric acid) and residual. Fe from the pelleted diet was mobilized by rat stomach to the exchangeable fraction, then redistributed to the carbonate- and oxide-bound fractions on passage through the proximal small intestine. In vitro incubation of diet with hydrochloric acid failed to mimic the in vivo effect of the stomach. In vitro neutralization of stomach contents with bicarbonate was found to produce a similar effect on Fe speciation to that seen when diet passed the proximal small intestine in vivo. Comparison of 59Fe speciation in extrinsically labelled diet with endogenous Fe speciation showed that extrinsic labelling does not uniformly label all endogenous species. The experiments suggest that selective extraction may provide a useful approach to the study of Fe species present in diets, in vitro digestions and gastrointestinal contents.

Animals↗

Selective extraction of naturally occurring radioactive Ra2+.

Organic extractants play a significant role in the selective removal of radioactive cations from waste streams. Although, literature on the selective removal of man-made radioactive material such as Americium (Am) is widespread, the selective removal of naturally occurring radioactive material such as Ra2+ is only mentioned sporadically. This tutorial review deals with the selective extraction of the highly radiotoxic Ra2+. Special attention is paid to different types of organic extractants used.

Acids↗

Selective extraction of higher fullerenes using cyclic dimers of zinc porphyrins.

Higher fullerenes (>/=C76) were selectively extracted from a fullerene mixture obtained from a combustion-based industrial production source by cyclic dimers of beta-unsubstituted porphyrin zinc complexes 2C5-2C7 with C5-C7 alkylene spacers as host molecules. Results of single extraction of the fullerene mixture with 2C5-2C7 together with a beta-substituted analogue of 2C6 (1C6) and spectroscopic titration of 2C6 and 1C6 with C60, C70, and C96 indicated that the host selectivity toward higher fullerenes is much dependent on the structure of the porphyrin units and the size of the host cavity. Sequential three-stage extraction of the fullerene mixture with the best-behaved 2C6 resulted in considerable enrichment in very rare fullerenes C102-C110 (<0.1 abs %) up to 82 abs % (C76-C114, 99 abs %) (356 nm) of total fullerenes.

Journal Article↗

Selective extraction of benzoic acid from landfill leachate by solid-phase extraction and ion-exchange chromatography.

In this work a simple method was described for selective extraction of benzoic acid from landfill leachate samples. The samples were submitted to solid-phase extraction (SPE) with XAD-4 resin as the stationary phase and ion-exchange chromatography (IEC) using the ion-exchange resin Amberlyst A-27. The instrumental analysis was performed by gas chromatography with mass spectrometric detection (GC-MSD). Benzoic acid was isolated, identified and quantified. The extraction process is rapid, simple and of low cost. It was also environmental friendly, that is, it was used a minimum amounts of hazardous organic solvents and produced also minimum quantities of residues.

Benzoic Acid↗

[Selective extraction of organotin from biological sample by supercritical fluid extraction].

The preliminary separation and concentration of organotin compounds from the matrix of biological samples is necessary, due to the very low content of organotin and the fat included in samples will largely interfere the analysis of organotins. In this work, supercritical fluid extraction (SFE) for the preliminary separation and concentration of organotin has been studied. Pure CO2 was used as mobile phase. The extractives can be used to supercritical fluid chromatographic (SFC) analysis of organotins. The model sample was prepared by adding diphenyltin (DPT) to soya powder. The effects of the pressure and temperature on SFE were investigated. A small amount of fat was also extracted together with organotins. Extract was injected into SFC system, in which a Kapcell Pak ODS column was used for separation of organotin and fat. The effect of pressure on the extraction percentage of DPT and fat was investigated at 40 degrees C. At lower pressure (10-15 MPa), a maximum extraction efficiency (63%) was attained for DPT, while the fat is extracted only 28.3%. The increase in temperature is advantageous for the selective extraction of DPT. However, the extraction efficiency of DPT decreased as the extraction temperature was increased. When a lower pressure (10 MPa) and a higher temperature (50 degrees C) were used, the organotin (DPT) was extracted up to a maximum (59.9%) within 30 min, while fat was extracted only 4.9%.

Chromatography, Supercritical Fluid↗

[Morphology and molecular pathology: detection of hepatitis C virus RNA sequences in stained sections by microscopy-directed selective extraction].

We have developed a method for extracting and detecting HCV (hepatitis C virus) RNA from histologically identified lesions in post-stained paraffin sections of human liver tissues. After confirming the lesion by light microscopy, this method enabled us to extract HCV RNA selectively from hepatic nodules and surrounding cirrhosis respectively. We examined 6 HCV positive patients with 7 hepatic nodules [5 hepatocellular carcinomas (HCC) and 2 adenomatous hyperplasias (AH)] and surrounding cirrhotic tissue. After staining with hematoxylin and confirming the histologic lesions under the microscopy, the same amount of tumor and cirrhotic tissues were collected from the slide sections. RNA was extracted by GITC method (Chomczynsky's method). Positive and negative strand RNAs of HCV-NT region were amplified by reverse-transcription and double PCR methods (RT/double PCR) followed by the Southern blotting and the hybridization with HCV-NT probe. Southern blotting disclosed positive strand HCV-RNA in all tumors except one case as well as surrounding cirrhotic livers. This one case had no detectable band in any samples. Negative strand HCV-RNAs could be detected in 4 cases with 5 tumors (4 HCCs and 1 AH) and surrounding cirrhotic livers, suggesting that HCV replication (proliferation) persisted in these tissues. We have confirmed that HCV-RNA sequences are present in liver tissues in several stages of hepatocarcinogenesis (cirrhosis, AH and HCC). These findings suggest that HCV is involved in hepatocarcinogenesis in chronic hepatitis C and cirrhosis. Our method is the first report of RNA extraction from the post-stained paraffin sections allowing precise histopathologic identification of the lesions. This method will be useful for the molecular studies of archival tissues as well as for the morphological examination, because it has the characteristics of both studies.

Aged↗

Selective Extraction of Genomic DNA From Animal Tissues Using a Hydrophobic Magnetic Ionic Liquid.

The development of green and efficient methods for genomic DNA extraction from animal tissues is crucial for molecular diagnostics, food traceability, and genetic research. Conventional methods often involve toxic reagents, multiple centrifugation steps, and are time-consuming. In this study, a hydrophobic magnetic ionic liquid (MIL), N-octyl-4-dimethylaminopyridinium hexafluorophosphate MIL ([C8DMAP][PF6]&#x2011;Ni MIL), was synthesized and applied for the selective extraction of genomic DNA from various animal tissues. The material exhibited strong paramagnetic behavior, high thermal stability, and excellent hydrophobicity, enabling rapid phase separation under an external magnetic field. A mechanical shaking-assisted extraction method was developed, and key parameters&#xa0;including temperature, time, shaking speed, and [C8DMAP][PF6]-Ni MIL dosage were systematically optimized. The method demonstrated high selectivity for DNA over proteins, RNA, and amino acids, with a maximum recovery rate of 78.06 &#xb1; 1.91%. Compared to a commercial DNA extraction kit, the [C8DMAP][PF6]-Ni MIL-based approach provided higher yields from several tissues, including mouse liver, brain, and rabbit lung. Furthermore, the [C8DMAP][PF6]-Ni MIL could be reused for at least six cycles while maintaining extraction efficiency. This work not only provides a high-performance material for DNA extraction, but also demonstrates a sustainable and easily retrievable liquid-phase separation strategy, offering a generalizable platform for complex sample pretreatment.

Animals↗

Selective extraction and recovery of cytochrome c by liquid-liquid extraction using a calix[6]arene carboxylic acid derivative.

Recently, we reported that a calix[6]arene carboxylic acid derivative can selectively extract the lysine-rich protein cytochrome c by interacting with amino groups on the protein surface. In the present article, quantitative extraction and recovery of cytochrome c using this calix[6]arene carboxylic acid derivative are described. Both adjustment of the pH under acidic conditions and addition of an alcohol are necessary to strip the extracted protein from an organic solution to an aqueous solution. Separation of cytochrome c and lysozyme using the calix[6]arene was achieved under the optimal conditions. In the forward extraction stage, 93% of the cytochrome c was extracted, while lysozyme remained in the solution. In the subsequent stripping stage, the extracted cytochrome c was quantitatively recovered in an aqueous solution. Finally, separation of these proteins, which have similar molecular weights and isoelectric points, was accomplished.

Alcohols↗

Selective extraction of pyrethroid pesticide residues from milk by solid-matrix dispersion.

A rapid procedure has been developed that allows a single-step, selective extraction and clean-up of pyrethroid (PYR) pesticide residues from milk dispersed on solid-matrix diatomaceous material filled into disposable cartridges and eluted by means of light petroleum saturated with acetonitrile and ethanol. The extract was cleaned up by high-performance size-exclusion chromatography. Determinations were carried out by gas chromatography with electron-capture detection. Recovery experiments were carried out on homogenized commercial milk (3.6% fat content) that was spiked with solutions of 14 PYR pesticides, viz., tefluthrin, tetramethrin, cyphenothrin, cyfluthrin, flucythrinate, fluvalinate, deltamethrin, bioallethrin, fenpropathrin, lambda-cyhalothrin, permethrin, alpha-cypermethrin, esfenvalerate and tralomethrin, at levels ranging from 0.04 to 0.41 mg/kg for the different PYR pesticides. Average recoveries were in the range 60-119% for the different PYR pesticides, with relative standard deviations from ca. 2.5 to 14.4%. Coextracted fatty material amounted to an average of ca. 5 mg/ml of milk. The sole extraction step requires about 30 min. The main advantages of the procedure are that extraction of PYR pesticides (with a minimum carry over of fat) is performed in a single step, emulsions do not occur, several samples can be run in parallel by a single operator, reusable glassware is not needed and simple operations are required.

Animals↗

Selective extraction of Chara actin bundles: identification of actin and two coextracting proteins.

The sub-cortical actin bundles of the alga Chara corallina can be selectively extracted with a low salt solution except when cytochalasin B is present. Proteins with molecular weights of 160000, 43000 and 37000 share this extraction behaviour. While chemical cleavage of the 43000 band indicates that it is actin, the nature of the other proteins is unknown. Although the 37000 protein resembles tropomyosin in molecular weight it lacks tropomyosin's distinctively large change in electrophoretic mobility in the presence of urea.

Actins↗

Coating of solid-phase microextraction fibers with chemically bonded silica particles: selective extraction of polycyclic aromatic hydrocarbons from drinking water samples.

In this study, solid-phase microextraction fibers coated with modified silica particles (5 pm dp) bonded to methyl (C1), hexyl (C6), octyl (C8), and polymeric octadecyl (C18) groups are prepared and evaluated. Selective extraction of polycyclic aromatic hydrocarbons (PAHs) from river water is used to demonstrate the selective behavior of the fibers as a function of the alkyl chains bonded to the silica phase. Scanning electron micrography suggests that the coating structure consists in a monolayer of particles bonded to the surface of the fiber. The behavior of the fibers upon the extraction of PAHs from water samples is compared with the use of standard polydimethylsiloxane fibers that are commercially available.

Journal Article↗

The assay of 4-hydroxy-3-methoxymandelic acid in urine by HPLC with electrochemical detection using bonded-phase silica sorbents for rapid, simple and selective extraction.

A method is reported for the determination of 4-hydroxy-3-methoxymandelic acid (HMMA) by HPLC with electrochemical detection. The preparation of sample prior to HPLC has been studied and an efficient and selective extraction procedure described. Bonded-phase silica extraction columns and a vacuum manifold were used for the simple and rapid processing of batches of urine samples. Combining a reverse-phase C18 and an anion exchange column ensures selective isolation of HMMA. This simplified greatly the subsequent chromatography. The method was combined into a simple scheme for the routine analysis of urine HMMA, catecholamines and 5-hydroxyindole-3-acetic acid. The HPLC was standardised such that a single mobile phase was used with minor modification for each of the assays.

Chromatography↗

A selective extraction of growth hormone from bovine pituitary gland and its further purification and crystallization.

A highly efficient method for the isolation of bovine growth hormone (GH) is described. The method is based on selective extraction of GH from 15,000 g subcellular sediment of anterior pituitary gland with 130-150 mM NH4HCO3, 1 mM EGTA, pH 7.2-7.4, at 2-6 degrees C for 60 min, purification of the extracted GH by ammonium sulfate fractionation, one-step ion-exchange column chromatography on DEAE-cellulose (or CM-cellulose), and gel filtration on Sephadex G-75. This 2-3 day procedure provides a highly pure hormone in high yield (up to 70-80 mg per 35-40 g of the whole pituitary gland), which can be crystallized by the batch method at a low ionic strength and isoelectric pH.

Ammonium Sulfate↗

A technique for the selective extraction of water-soluble polypeptides from identified neurons of Aplysia californica.

Increasing the osmotic gradient during hypo-osmotic lysis, by pre-treating Aplysia neurons with 100% ethylene glycol, caused the selective extraction of water-soluble, low molecular weight polypeptides from the cells. Specific 3H-labeled polypeptides in the cells R15, R3-13, and the bag cells which were not extracted by exposure of the cells to distilled water "lysis" were effectively solubilized by this procedure. The possible mechanisms and potential uses of this method are discussed.

Animals↗

Selective extraction, concentration, and assay of orthophosphate from microliter quantities of cultured mammalian cells.

A colorimetric procedure is described for determination of orthophosphate (0.2-2.5 nmol) in sample volumes up to 400 microliters. Orthophosphate is selectively extracted (in the form of phosphomolybdate) into an organic solvent mixture (2-methylpropan-1-ol and petroleum spirit) leaving interfering substances, such as labile organic phosphates, in the aqueous phase. Orthophosphate is then back-extracted into a small volume of aqueous sodium hydroxide. By keeping this volume small, orthophosphate from large dilute samples can be concentrated into small volumes and assayed colorimetrically in microcuvettes using the dye malachite green. The procedure is highly reproducible and insensitive to interfering substances, as shown by comparison with a conventional malachite green assay without the solvent extraction.

Animals↗

Selective extraction of beta-blockers from biological fluids by column-switching high-performance liquid chromatography using an internal-surface phenylboronic acid precolumn.

A column-switching HPLC method using an internal-surface phenylboronic acid precolumn for the selective extraction of beta-blockers from biological fluids has been developed. Filtered urine and plasma samples (50 microliters) were injected onto the precolumn equilibrated with methanol-0.05 M disodium hydrogenphosphate (5:95, v/v). After the precolumn had been washed briefly, the selectively retained beta-blockers were eluted with methanol-0.05 M phosphate buffer (pH 2.0) and transferred to a reversed-phase analytical column, on which they were then separated. Even after exposure to at least 160 injections of non-treated urine and plasma samples, the retention efficiency of the precolumn was maintained with no increase in back pressure. Quantitative recoveries and good reproducibility were demonstrated with pindolol.

Adrenergic beta-Antagonists↗

A solid-phase microextraction fiber coated with diglycidyloxycalix[4]arene yields very high extraction selectivity and sensitivity during the analysis of chlorobenzenes in soil.

A novel fiber coated with novel sol-gel (5,11,17,23-tetra-tert-butyl-25,27-dihydroxy-26,28-diglycidyloxycalix[4]arene/hydroxy-terminated silicone oil; diglycidyloxy-C[4]/OH-TSO) was prepared for use with headspace solid-phase microextraction (HS-SPME) combined with gas chromatography (GC) and electron capture detection (ECD), which was applied in order to determine nine chlorobenzenes in soil matrices. Due to the improved fiber preparation, which increases the percentage of calixarene in the coating, the new calixarene fiber exhibits very high extraction selectivity and sensitivity to chlorine-substituted compounds. Various parameters affecting the extraction efficiency were optimized in order to maximize the sensitivity during the chlorobenzene analysis. Interferences from different soil matrices with different characteristics were investigated, and the amount extracted was strongly influenced by the matrix. Therefore, a standard addition protocol was performed on the real soil samples. The linear ranges of detection for the chlorobenzenes tested covered three orders of magnitude, and correlation coefficients >0.9976 and relative standard deviations (RSD) <8% were observed. The detection limits were found at sub-ng/g of soil levels, which were about an order of magnitude lower than those given by the commercial poly(dimethylsiloxane) (PDMS) coating for most of the compounds. The recoveries ranged from 64 to 109.6% for each analyte in the real kaleyard soil matrix when different concentration levels were determined over the linear range, which confirmed the reliability and feasibility of the HS-SPME/GC-ECD approach using the fiber coated with diglycidyloxy-C[4]/OH-TSO for the ultratrace analysis of chlorobenzenes in complex matrices.

Journal Article↗