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PubMed2002

Element analysis of the Polysphondylium pallidum gp64 promoter.

gp64 mRNA in Polysphondylium pallidum is expressed extensively during vegetative growth, and begins to rapidly decrease at the onset of development. To examine this unique regulation, 5' deletion analysis of the gp64 promoter was undertaken, and two growth-phase activated elements have been found: a food-dependent, upstream regulatory region (FUR, -222 to -170) and a vegetatively activated, downstream region (VAD, -110 to -63). Here we concentrate our analysis on an A1 and A2 sequences in the FUR region: A1 consists of a GATTTTTTTA sequence called a corresponding sequence and A2 consists of the direct repeat TTTGTTGTG. The cells carrying a combined construct of A1 and A2 acted synergistically in a reporter activity. A point mutation analysis in A1 indicates that a G residue is required for the activation of A1. From analyses of promoter regulation in a liquid or a solid medium, the promoter activity of the cells fed on bacteria in A-medium (axenic medium for Polysphondylium) or grown in A-medium alone was only one fourth of that of the cells fed on bacteria. By the gel retardation, we detected a protein bound to the A1 sequence.

Animals↗
PubMed2002

A putative serpentine receptor gene tasA required for normal morphogenesis of primary stalk and branch structure in Polysphondylium pallidum.

The fruiting body of Polysphondylium pallidum is composed of whorls of branches along the axis of a primary stalk. In the course of fruiting body formation, the interval between neighboring whorls and the number and the spacing of branches in a whorl are highly regulated. In this study, using restriction enzyme mediated integration mutagenesis, we have obtained a mutant (strain M6226) with thicker and aberrant primary stalk. The gene responsible for the mutant phenotype, confirmed by homologous recombination, encodes an open reading frame with 383 aa residues (46.3 kDa) and was named thick and aberrant stalk A (tasA). TasA is highly homologous to Dictyostelium discoideum cyclic adenosine 3',5'-monophosphate receptors. A tasA transcript is expressed strictly at the late aggregation stage. Cells expressing a tasA::gfp fusion DNA are localized at the posterior region of the primary sorogen where secondary sorogens and branches originate. This result indicates the existence of 'prebranch' and 'pretrunk' regions in P. pallidum instead of the prespore and prestalk regions in D. discoideum. The analyzes of the gene disruptant and chimeric fruiting bodies also suggests that TasA affects the normal morphogenesis of the primary stalk and the process of cell differentiation into prebranch cells, but not into spore or stalk cells directly.

Amino Acid Sequence↗
PubMed1999

LbrA, a protein predicted to have a role in vesicle trafficking, is necessary for normal morphogenesis in Polysphondylium pallidum.

The fruiting body of Polysphondylium pallidum is composed of whorls of branches along the axis of a central stalk. In the course of fruiting body formation, the interval between neighboring whorls, and the number and the spacing of branches in a whorl are highly regulated. In this study, using the REMI (restriction-enzyme-mediated integration) insertional mutagenesis method, we obtained a mutant (strain M2323) with longer branches than those of the wild-type strain PN500. The sequence analyses revealed the presence of an ORF of 206 aa residues (23 kDa) near the vector insertion site. Disruption of the gene, lbrA (long branch A), by homologous recombination causes the same phenotype as that of M2323. A lbrA transcript is expressed maximally at the early aggregation stage in the parental strain, but is not detectable in the REMI mutant. A homology search showed that LbrA is a member of the p24 family proteins, which have been proposed to function as receptors for cargo proteins that are transported by COP I- (coat protein I) and/or COP II-coated vesicles between the endoplasmic reticulum and the Golgi complex. As far as we know, this is the first paper to show that a p24 family member is implicated in morphogenesis.

Amino Acid Sequence↗
PubMed2006

Pandora's mycological box: molecular sequences vs. morphology in understanding fungal relationships and biodiversity.

Fundamental reappraisals of diverse traditional ideas in mycology have become necessary as a result of molecular insights. These different insights are discussed in relation to: the positions of microsporidia, slime moulds and oomycetes; the basal position of lichen fungi in the evolution of ascomycetes forming fruit bodies; remodelling of orders and families; changed generic concepts; the issue of whether permitting a dual nomenclature for the different states of pleomorphic fungi should be continued; and the recognition of additional cryptic species within a "species". The molecular data has necessitated a reassessment of the systematic importance of many types of characters. Also, the techniques open exciting horizons and undreamed of abilities through being able to identify non-sporing fungi in ecological samples and plant material, and revealing unexpected levels of diversity in hitherto little-explored habitats. Major advances in understanding how fungi operate through total genomic approaches can be anticipated as more are completely sequenced. The Pandora's box of molecular surprises is to be seen as one of blessings and not one of miseries and evils.

Agaricales↗
PubMed1998

Two-component signal transduction systems in eukaryotic microorganisms.

Conserved signal transduction pathways that use phosphorelay from histidine kinases through an intermediate transfer protein (H2) to response regulators have been found in a variety of eukaryotic microorganisms. Several of these pathways are linked to mitogen-activated protein kinase cascades. These networks control different physiological responses including osmoregulation, cAMP levels and cellular morphogenesis.

Amino Acid Sequence↗
PubMed2005

Isolation and synthesis of a new aromatic compound, brefelamide, from dictyostelium cellular slime molds and its inhibitory effect on the proliferation of astrocytoma cells.

[structure: see text] We have explored the diversity of secondary metabolites produced by cellular slime molds to examine the possible use of such cellular slime molds as a resource for novel drug development. A new aromatic amide, brefelamide (1), was isolated from methanol extracts of the fruiting bodies of Dictyostelium brefeldianum and D. giganteum. The structure of 1 was determined by spectral means including EIMS and (1)H and (13)C NMR. The total synthesis of 1 was carried out to confirm the structure and obtain sufficient samples for performing biological evaluation. Interestingly, compound 1 inhibited the cellular proliferation of 1321N1 human astrocytoma cells.

Amides↗
PubMedDate not supplied

Origins of differentiation via phenotypic plasticity.

How cell types of multicellular organisms came to be differentiated is still an open issue. Here I offer a model that posits that the origins of some cell differentiation patterns were originally passive outcomes of environmental effects. As cells' contact with the external environment was diminished, their patterns of gene expression were altered, due to changes in concentrations of externally supplied substances. Later, as multicellular growth continued, the relationships of cell layers to each other shifted, producing concentration gradients of signaling molecules. These gradients emanated both from the external cell layer toward the inside and from internal cell layers to adjacent layers. In this scenario then, differentiation arose initially as a by-product of the changing patterns of gene expression and of the complex mixtures and changing concentrations of substances passing among layers. Subsequent selection would operate to stabilize the expression patterns in those cell layers whose phenotypes provide a fitness advantage to the organism.

Animals↗
PubMed2002

Characterization of two unusual guanylyl cyclases from dictyostelium.

Guanylyl cyclase A (GCA) and soluble guanylyl cyclase (sGC) encode GCs in Dictyostelium and have a topology similar to 12-transmembrane and soluble adenylyl cyclase, respectively. We demonstrate that all detectable GC activity is lost in a cell line in which both genes have been inactivated. Cell lines with one gene inactivated were used to characterize the other guanylyl cyclase (i.e. GCA in sgc(minus sign) null cells and sGC in gca(minus sign) null cells). Despite the different topologies, the enzymes have many properties in common. In vivo, extracellular cAMP activates both enzymes via a G-protein-coupled receptor. In vitro, both enzymes are activated by GTPgammaS (K(a) = 11 and 8 microm for GCA and sGC, respectively). The addition of GTPgammaS leads to a 1.5-fold increase of V(max) and a 3.5-fold increase of the affinity for GTP. Ca(2+) inhibits both GCA and sGC with K(i) of about 50 and 200 nm, respectively. Other biochemical properties are very different; GCA is expressed mainly during growth and multicellular development, whereas sGC is expressed mainly during cell aggregation. Folic acid and cAMP activate GCA maximally about 2.5-fold, whereas sGC is activated about 8-fold. Osmotic stress strongly stimulates sGC but has no effect on GCA activity. Finally, GCA is exclusively membrane-bound and is active mainly with Mg(2+), whereas sGC is predominantly soluble and more active with Mn(2+).

Animals↗
PubMed2006

Molecular phylogeny and evolution of morphology in the social amoebas.

The social amoebas (Dictyostelia) display conditional multicellularity in a wide variety of forms. Despite widespread interest in Dictyostelium discoideum as a model system, almost no molecular data exist from the rest of the group. We constructed the first molecular phylogeny of the Dictyostelia with parallel small subunit ribosomal RNA and a-tubulin data sets, and we found that dictyostelid taxonomy requires complete revision. A mapping of characters onto the phylogeny shows that the dominant trend in dictyostelid evolution is increased size and cell type specialization of fruiting structures, with some complex morphologies evolving several times independently. Thus, the latter may be controlled by only a few genes, making their underlying mechanisms relatively easy to unravel.

Animals↗
PubMed1963

Nutrition of cellular slime molds. I. Growth on living and dead bacteria.

Hohl, Hans-Rudolf (University of Wisconsin, Madison) and Kenneth B. Raper. Nutrition of cullular slime molds. I. Growth on living and dead bacteria. J. Bacteriol. 85:191-198. 1963.-Methods for growing selected species of cellular slime molds in liquid culture on living and dead bacteria are described. Species investigated included Polysphondylium pallidum, P. violaceum, Dictyostelium discoideum, and D. purpureum. Maximal growth of myxamoebae occurred in suspensions of 10(10) living bacteria (Escherichia coli B/r)/ml in Sörensen's phosphate buffer (pH 6.0), reaching a density of 10(7) to 2 x 10(7) cells/ml in 48 hr. The generation time for the different slime molds ranged from 2.4 hr for P. violaceum to 2.9 hr for D. discoideum (strain V-12). Good growth of P. pallidum occurred between pH 3.6 and 7.8. The slime molds grew less well on dead (autoclaved) than on living bacteria and, except for P. pallidum, the amount and rate of growth decreased markedly as the time of autoclaving was increased from 2.5 to 80 min. Bacteria killed with propylene oxide supported growth equal to those autoclaved for a few minutes. The myxamoebae were very sensitive to the osmotic pressure of the culture medium, especially in the presence of living bacteria, and addition of as little as 0.01 m NaCl caused a measurable decrease in slime mold growth. The culture techniques employed afford useful methods for investigating the nutritional requirements of the cellular slime molds, and the experiments described provide the bases for subsequent studies relating to the axenic cultivation of these singular microorganisms.

Bacteria↗
PubMed1963

Nutrition of cellular slime molds. II. Growth of Polysphondylium pallidum in axenic culture.

Hohl, Hans-Rudolf (University of Wisconsin, Madison) and Kenneth B. Raper. Nutrition of cellular slime molds. II. Growth of Polysphondylium pallidum in axenic culture. J. Bacteriol. 85:199-206. 1963.-Several strains of Polysphondylium pallidum were grown on a liquid soluble medium in axenic culture. The medium contained embryo extract, serum albumin, Tryptose, dextrose, vitamins, and salts. The final cell yield was about 6-11 x 10(6) cells/ml, depending on the strain. The generation time was usually about 5 to 6 hr. The myxamoebae were grown for over 125 generations on this soluble complex medium without decrease in growth vigor or loss of their capacity to form normal fructifications when removed to an appropriate surface (e.g., agar). Thus the whole life cycle of this species was completed in the absence of any bacteria or bacterial products. Other species of the Dictyosteleaceae grew less well or failed to grow in the liquid medium described.

Agar↗
PubMed1963

NUTRITION OF CELLULAR SLIME MOLDS. III. SPECIFIC GROWTH REQUIREMENTS OF POLYSPHONDYLIUM PALLIDUM.

Hohl, Hans-Rudolf (University of Wisconsin, Madison), and Kenneth B. Raper. Nutrition of cellular slime molds. III. Specific growth requirements of Polysphondylium pallidum. J. Bacteriol. 86:1314-1320. 1963.-Soluble media for the axenic growth of certain strains of Polysphondylium pallidum are described. One of the media, referred to as the complex medium, was composed of 2% tryptose and 4% serum albumin in an inorganic salt solution. Cell densities of up to 10(7) myxamoebae per ml were obtained. Supplementing this medium with amino acids, vitamins, nucleic acid bases, and glucose resulted in growth of strain Pan-17 up to 3 x 10(7) cells per ml with a generation time during the log phase of about 4.5 hr. A defined medium was subsequently developed that allowed growth of strain Fr-47 up to 2 x 10(6) to 5.5 x 10(6) myxamoebae per ml in the presence of 1% serum albumin. The base medium contained the following essential nutrients: six amino acids (glycine, methionine, lysine, isoleucine, tryptophan, and tyrosine), riboflavine, purines and pyrimidines, and a carbohydrate (dextrose) dissolved in an inorganic salt solution containing trace elements.

Amino Acids↗