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At least 37 records · Page 2Linked to original sources
PubMed2006

A model for correcting the fluorescence signal from a free-falling depth profiler.

Measuring chlorophyll fluorescence at five different wavelengths provides the discrimination of four phytoplankton groups. Here the problems associated with a free-falling depth profiler for phytoplankton discrimination are considered. When F0, F, and Fm are determined sequentially in the same measuring cell, then the algae inside the cell have a different light history. It depends on their different locations in the cell as caused by the induction curve of chlorophyll fluorescence. Mathematical algorithms are developed which enable the calculation of the concentrations of individual phytoplankton groups from the integral fluorescence signal (averaged for 1s) for different velocities of the falling probe. The theory requires the knowledge of the fluorescence behaviour of phytoplankton in stationary suspensions. The predictions of the model are compared with measurements in flowing suspensions containing chlorophyta, cyanobacteria, cryptophyta and diatoms. The comparison shows the reliability of the algorithms. The application of the algorithms is indispensable for dark-adapted cells and is less important for light-adapted cells.

Chlorophyll↗
PubMed2002

A fluorometric method for the differentiation of algal populations in vivo and in situ.

Fingerprints of excitation spectra of chlorophyll (Chl) fluorescence can be used to differentiate 'spectral groups' of microalgae in vivo and in situ in, for example, vertical profiles within a few seconds. The investigated spectral groups of algae (green group, Chlorophyta; blue, Cyanobacteria; brown, Heterokontophyta, Haptophyta, Dinophyta; mixed, Cryptophyta) are each characterised by a specific composition of photosynthetic antenna pigments and, consequently, by a specific excitation spectrum of the Chl fluorescence. Particularly relevant are Chl a, Chl c, phycocyanobilin, phycoerythrobilin, fucoxanthin and peridinin. A laboratory-based instrument and a submersible instrument were constructed containing light-emitting diodes to excite Chl fluorescence in five distinct wavelength ranges. Norm spectra were determined for the four spectral algal groups (several species per group). Using these norm spectra and the actual five-point excitation spectrum of a water sample, a separate estimate of the respective Chl concentration is rapidly obtained for each algal group. The results of dilution experiments are presented. In vivo and in situ measurements are compared with results obtained by HPLC analysis. Depth profiles of the distribution of spectral algal groups taken over a time period of few seconds are shown. The method for algae differentiation described here opens up new research areas, monitoring and supervision tasks related to photosynthetic primary production in aquatic environments.

Journal Article↗
PubMed2003

PLMItRNA, a database on the heterogeneous genetic origin of mitochondrial tRNA genes and tRNAs in photosynthetic eukaryotes.

The updated version of PLMItRNA reports information and multialignments on 609 genes and 34 tRNA molecules active in the mitochondria of Viridiplantae (27 Embryophyta and 10 Chlorophyta), and photosynthetic algae (one Cryptophyta, four Rhodophyta and two Stramenopiles). Colour-code based tables reporting the different genetic origin of identified genes allow hyper-textual link to single entries. Promoter sequences identified for tRNA genes in the mitochondrial genomes of Angiospermae are also reported. The PLMItRNA database is accessible at http://bighost.area.ba.cnr.it/PLMItRNA/.

Chlorophyta↗
PubMed1987

Origin and evolution of organisms as deduced from 5S ribosomal RNA sequences.

A phylogenetic tree of most of the major groups of organisms has been constructed from the 352 5S ribosomal RNA sequences now available. The tree suggests that there are several major groups of eubacteria that diverged during the early stages of their evolution. Metabacteria (= archaebacteria) and eukaryotes separated after the emergence of eubacteria. Among eukaryotes, red algae emerged first; and, later, thraustochytrids (a Proctista group), ascomycetes (yeast), green plants (green algae and land plants), "yellow algae" (brown algae, diatoms, and chrysophyte algae), basidiomycetes (mushrooms and rusts), slime- and water molds, various protozoans, and animals emerged, approximately in that order. Three major types of photosynthetic eukaryotes--i.e., red algae (= Chlorophyll a group), green plants (Chl. a + b group) and yellow algae (Chl. a + c)--are remotely related to one another. Other photosynthetic unicellular protozoans--such as Cyanophora (Chl. a), Euglenophyta (Chl. a + b), Cryptophyta (Chl. a + c), and Dinophyta (Chl. a + c)--seem to have separated shortly after the emergence of the yellow algae.

Animals↗
PubMed1967

Immunochemistry of biliproteins.

Biliproteins were extracted from representatives of the Cyanophyta, Rhodophyta, and Cryptophyta and purified. Both purified and crude biliproteins were used to stimulate rabbit antibody directed specifically against the biliproteins. The antigenic and immunogenic inter-relationships of these proteins were investigated by the Ouchterlony double diffusion technique. C-phycocyanins from all sources were found to be antigenically and immunogenically related and apparently also related to allophycocyanin but not to any of the phycoerythrins. Larger antigenic differences among phycoerythrins from different groups of algae were discovered. The role of aggregation of the individual biliproteins in their immunochemistry was characterized. Attempts were made to determine the phylogenetic significance of these results. The immunochemical aspects of the biliproteins were striking in that protein antigens from vastly different cell types were found to be closely related. This relationship may be interpreted as supporting the suggestion that Rhodophyta evolved from Cyanophyta or from some common ancestral stock.

Animals↗
PubMed2005

Genetic diversity of small eukaryotes in lakes differing by their trophic status.

Small eukaryotes, cells with a diameter of less than 5 mum, are fundamental components of lacustrine planktonic systems. In this study, small-eukaryote diversity was determined by sequencing cloned 18S rRNA genes in three libraries from lakes of differing trophic status in the Massif Central, France: the oligotrophic Lake Godivelle, the oligomesotrophic Lake Pavin, and the eutrophic Lake Aydat. This analysis shows that the least diversified library was in the eutrophic lake (12 operational taxonomic units [OTUs]) and the most diversified was in the oligomesotrophic lake (26 OTUs). Certain groups were present in at least two ecosystems, while the others were specific to one lake on the sampling date. Cryptophyta, Chrysophyceae, and the strictly heterotrophic eukaryotes, Ciliophora and fungi, were identified in the three libraries. Among the small eukaryotes found only in two lakes, Choanoflagellida and environmental sequences (LKM11) were not detected in the eutrophic system whereas Cercozoa were confined to the oligomesotrophic and eutrophic lakes. Three OTUs, linked to the Perkinsozoa, were detected only in the Aydat library, where they represented 60% of the clones of the library. Chlorophyta and Haptophyta lineages were represented by a single clone and were present only in Godivelle and Pavin, respectively. Of the 127 clones studied, classical pigmented organisms (autotrophs and mixotrophs) represented only a low proportion regardless of the library's origin. This study shows that the small-eukaryote community composition may differ as a function of trophic status; certain lineages could be detected only in a single ecosystem.

Animals↗
PubMed2006

Succession and regulation factors of small eukaryote community composition in a lacustrine ecosystem (Lake Pavin).

The structure and dynamics of small eukaryotes (cells with a diameter less than 5 microm) were studied over two consecutive years in an oligomesotrophic lake (Lake Pavin in France). Water samples were collected at 5 and 30 m below the surface; when the lake was stratified, these depths corresponded to the epilimnion and hypolimnion. Changes in small-eukaryote structure were analyzed using terminal restriction fragment length polymorphism (T-RFLP) and cloning and sequencing of the 18S rRNA genes. Terminal restriction fragments from clones were used to reveal the dominant taxa in T-RFLP profiles of the environmental samples. Spumella-like cells (Chrysophyceae) did not dominate the small eukaryote community identified by molecular techniques in lacustrine ecosystems. Small eukaryotes appeared to be dominated by heterotrophic cells, particularly Cercozoa, which represented nearly half of the identified phylotypes, followed by the Fungi-LKM11 group (25%), choanoflagellates (10.3%) and Chrysophyceae (8.9%). Bicosoecida, Cryptophyta, and ciliates represented less than 9% of the community studied. No seasonal reproducibility in temporal evolution of the small-eukaryote community was observed from 1 year to the next. The T-RFLP patterns were related to bottom-up (resources) and top-down (grazing) variables using canonical correspondence analysis. The results showed a strong top-down regulation of small eukaryotes by zooplankton, more exactly, by cladocerans at 5 m and copepods at 30 m. Among bottom-up factors, temperature had a significant effect at both depths. The concentrations of nitrogenous nutrients and total phosphorus also had an effect on small-eukaryote dynamics at 5 m, whereas bacterial abundance and dissolved oxygen played a more important structuring role in the deeper zone.

Animals↗
PubMed2000

Phylogeny of the Bangiophycidae (Rhodophyta) and the secondary endosymbiotic origin of algal plastids.

The Rhodophyta (red algae) are composed of the subclasses Bangiophycidae and Florideophycidae. Two evolutionarily interesting features of the Bangiophycidae are: (1) they are the ancestral pool from which the more morphologically complex taxa in the Florideophycidae have arisen and (2) they are the sources of the plastids, through secondary endosymbioses, for the Cryptophyta, Haptophyta, and the Heterokonta. To understand Bangiophycidae phylogeny and to gain further insights into red algal secondary endosymbioses, we sequenced the plastid-encoded small subunit ribosomal DNA (rDNA) coding region from nine members of this subclass and from two members of the Florideophycidae. These sequences were included in phylogenetic analyses with all available red algal plus chlorophyll a + c algal plastid rDNA coding regions. Our results are consistent with a monophyletic origin of the Florideophycidae with these taxa forming a sister group of the Bangiales. The Bangiophycidae is of a paraphyletic origin with orders such as the Porphyridiales polyphyletic and distributed over three independent red algal lineages. The plastids of the heterokonts are most closely related to members of the Cyanidium-Galdieria group of Porphyridiales and are not directly related to cryptophyte and haptophyte plastids. The phylogenies provide strong evidence for the independent origins of these "complex" algal plastids from different members of the Bangiophycidae.

Journal Article↗
PubMedDate not supplied

[Revolution in megataxonomy: prerequisites and results].

Main stages of development of megataxonomy (the science of organic world dividing into large taxa) are considered. Prerequisites and first results of "revolution in megataxonomy" (cardinal reorganization during last years) are analyzed. Matter of "revolution" is considered: changing of main megataxonomic criteria from morpho-physiological to cytological and genetical ones. Advantages of classifications of organic world based on cytological and genetical criteria, and main arguments of their opponents are discussed. Some taxonomic changes based on published data are suggested: the kingdom Lamellitubulicristata (lamellicristate and tubulicristate eukaryots) is created, Cryptophyta, Prymnesiophyta, Percolozoa and Actinozoa are risen up to the kingdom rank. Original megasystem of dominion Eukaryota is build up, including 2 subdominions (Hypochondria and Epichondria), 3 superkingdoms (Hypocrystata, Discocrystata and Lamellitubulicristata) and 14 kingdoms (Archaeomonadobiontes, Microsporobiontes, Euglenobiontes, Percolobiontes, Myxobiontes, Actinobiontes, Alveolobiontes, Chromobiontes, Prymnesiobiontes, Cryptobiontes, Rhodobiontes, Chlorobiontes, Mycobiontes and Zoobiontes). Characters of these taxa and an outline of their evolutionary connections based on published data are provided.

Animals↗
PubMed2005

Negative effects of Microcystis blooms on the crustacean plankton in an enclosure experiment in the subtropical China.

Effects of Microcystis blooms on the crustacean plankton were studied using enclosure experiments during July-September, 2000. Eight enclosures were set in the hypereutrophic Donghu Lake. Different nutrient concentrations through additional nutrient and sediment in enclosures were expected to result in different abundance of Microcystis. From July to early August, the phytoplankton community was dominated by Chlorophyta, Cryptophyta, Bacillariophyta and Cyanophyta other than Microcystis aeruginosa. M. aeruginosa showed a rapid increase during early August in all enclosures and predominated. Crustacean plankton was dominated by the herbivorous Moina micrura, Diaphanosoma brachyurum and Ceriodaphnia cornuta, and the predaceous Mesocyclops sp. and Thermocyclops taihokuensis. During the pre-bloom period, the dynamics of M. micrura population appeared to be mainly affected by the predaceous cyclopoids. With the development of Microcystis blooms, such interaction between M. micrura and cyclopoids seemed weakened, especially when the Microcystis biomass was high. But there was no apparent influence on the interaction between Leptodora kindti and its zooplanktonic prey. The density of two cyclopoids decreased with the enhancement of Microcystis. The density decline of M. micrura was caused by both predation and inhibition by Microcystis. The low food availability of other edible phytoplankton during the blooms led to low densities of both C. cornuta and D. brachyurum by late August. It appears that dense Microcystis blooms exert strong negative effects on the herbivorous cladocerans and the predaceous cyclopoids.

Analysis of Variance↗
PubMed2005

[Eutrophication and pollution level of microcystin in Dianshan Lake].

A survey was conducted in Dianshan Lake to study the eutrophication indexes including total phosphorus (TP), total nitrogen (TN), pH, temperature, diaphaneity and chlorophyll-a level and dominant algae in seasons. The impacts of temperature, light, nitrogen and phosphorus on growth of and microcystin LR production by Microcystis aeraginosa strain under laboratory conditions were studied. Relationship between algal cell density and concentration of microcystin LR were studied. Results suggest that water in Dianshan Lake was eutrophicated. The suitable seasons for algae growth are the end of spring and summer. The annual average of TP and TN were 1.93 mg/L and 0.18 mg/L respectively. And 93.5 and 92.2 percent of TP and TN were higher than the criteria for the third class water body. Significant impact from agriculture was indicated since the peak of algae laged one month after the maxium use of fertilizer. The dominant algae in Dianshan Lake were cyanobacteria, bacillariophyta, cryptophyta and euglenophyta. Microcystis, anabaena and synedra, which excrete toxins and indicate water pollution, and are dominant algae species in summer. M. aeraginosa strain had a biggest growth rate at temperature of 25 degrees C and light intensity of 3 0001x, while microcystin LR production contents reached maximum at 20 degrees C and 5000lx respectively. The optimum TP and TN concentrations for growth of and toxin production by M. aeraginosa were found to be 650 micromol/L and 6.5 micromol/L respectively. TP is suspected to be the limiting factor for the growth of algae both in field and laboratory conditions. Positive correlations between total microcystin LR concentrations and algae cell density or M. aeraginosa cell densities are found. The algae cell density can be used to predict the level of algal toxins in water.

China↗
PubMed1993

[The basic types and forms of the fine structure of mitochondrial cristae: the degree of their evolutionary stability (capacity for morphological transformations)].

The organellological analysis being made of the fine structure of mitochondria in different species of the kingdom Protista, and in different cells of representatives of the kingdoms Plantae and Animalia (Metazoa). On the base of this analysis the following classification of types and forms of the fine structure of mitochondrial cristae is proposed. The Ist type, with lamellar (flat) cristae includes four morphological forms: ribbon, sheet, bundle-like and rounded ones (discoidal and plate-like). The 2nd type, with vesicular cristae, includes bubble, ampule, and sac-like ones. The 3rd type with tubular cristae. Among the representatives of each kingdom (Protista, Plantae and Metazoa) all the three types of mitochondrial cristae have been observed. The majority of cells of higher plants and higher animals have lamellar mitochondrial cristae, but sometimes (in some tissues) there are cells with tubular or vesicular mitochondrial cristae. On the base of the above classification some other conclusions have been made. Among the eukaryotes the vesicular cristae are spread as widely as tubular and lamellar ones. Only in a few macrotaxa (superphyla and phyla) of Protista all the investigated organisms have mitochondria of similar cristal organization. For example, Ciliophora have only tubular, and Cryptophyta only lamellar mitochondrial cristae. In the majority of protistan macrotaxa a certain mitochondrial type of cristae may dominate, but there is the number of species with some different mitochondrial patterns (Euglenophyta, Chlorophyta, Chrysophyta, Mycetozoa, etc.). In some macrotaxa (Chrysophyta, Mycetozoa, etc.) such mitochondrial patterns as mentioned above, are characteristic of the lower organisms. Finally, in some macrotaxa of Protista mitochondrial cristae of two or three types may appear in different species, sometimes even within the same genus; for example--Sporozoa, Myxospora and Ascetospora. In the course of ontogenesis of the vertebrates and insects, cell mitochondria in some of their tissues can change their morphological type from lamellar to tubular or vesicular. Similar transformations of mitochondrial cristae were observed in the life cycles of some trypanosomes (Kinetoplastida) and in the flagellate Polytoma (Chlorophyta) due to modifications in the culture conditions. It is undoubtedly that the principle of morphological concervatism in the organization of mitochondrial cristae may be used for purposes of systematics and phylogeny, however only after a thorough comparative organellological analysis of the fine structure in numerous species of the examined taxon.

Animals↗
PubMed1997

Effect of treated sewage on the water quality and phytoplankton populations of Lake Manzala (Egypt) with emphasis on biological assessment of water quality.

The effect of treated sewage on the quality of water and phytoplankton populations of Lake Manzala was studied with emphasis on use of algae to monitor water pollution as part of a search for a biological assessment of water quality. Lake Manzala is situated at the northern part of the Nile-delta, Egypt. Disposal of treated sewage into Lake Manzala appeared to have differential effects on water quality and phytoplankton populations. Marked seasonal and local variations were observed for the physical and chemical characteristics of water. 157 species of algae were identified, 59 Chlorophyta, 37 Bacillariophyta, 30 Cyanophyta (Cyanobacteria), 28 Euglenophyta, one Pyrrhophyta and 2 Cryptophyta. Distribution and abundance of these algal divisions were found to differ at different sampling stations. Qualitative and quantitative growth of each algal division displayed great seasonal variations. The phytoplankton standing crop was mainly due to the contribution of Bacillariophyta whereas the species composition is dependent mainly on Chlorophyta. A great parallelism was noted between the quality of water samples based upon the chemical and physical investigations and their quality based upon the biological indices. Compound eutrophication index indicated that the nature of the investigated water ranged between eutrophic and hypereutrophic conditions. Diversity index values indicated that the water in the study area was of a moderate level of pollution. Saprobic index and saprobic quotient revealed the presence of beta- to alpha-mesosaprobic forms of algae.

Egypt↗
PubMed2005

Multiple independent losses of photosynthesis and differing evolutionary rates in the genus Cryptomonas (Cryptophyceae): combined phylogenetic analyses of DNA sequences of the nuclear and the nucleomorph ribosomal operons.

In this study, evidence for at least three independent losses of photosynthesis in the freshwater cryptophyte genus Cryptomonas is presented. The phylogeny of the genus was inferred by molecular phylogenetic analyses of the nuclear internal transcribed spacer 2 (nuclear ITS2), partial nuclear large subunit ribosomal DNA (LSU rDNA), and nucleomorph small subunit ribosomal DNA (SSU rDNA, NM). Both concatenated and single data sets were used. In all data sets, the colorless Cryptomonas strains formed three different lineages, always supported by high bootstrap values (maximum parsimony, neighbor joining and maximum likelihood) and posterior probabilities (Bayesian analyses). The three leukoplast-bearing lineages displayed differing degrees of accelerated evolutionary rates in nuclear and nucleomorph rDNA. Also an increase in A + T-content in highly variable regions of the nucleomorph SSU rDNA was observed in one of the leukoplast-bearing lineages.

Base Composition↗
PubMed2006

A "green" phosphoribulokinase in complex algae with red plastids: evidence for a single secondary endosymbiosis leading to haptophytes, cryptophytes, heterokonts, and dinoflagellates.

Phosphoribulokinase (PRK) is an essential enzyme of photosynthetic eukaryotes which is active in the plastid-located Calvin cycle and regenerates the substrate for ribulose-bisphosphate carboxylase/oxygenase (Rubisco). Rhodophytes and chlorophytes (red and green algae) recruited their nuclear-encoded PRK from the cyanobacterial ancestor of plastids. The plastids of these organisms can be traced back to a single primary endosymbiosis, whereas, for example, haptophytes, dinoflagellates, and euglenophytes obtained their "complex" plastids through secondary endosymbioses, comprising the engulfment of a unicellular red or green alga by a eukaryotic host cell. We have cloned eight new PRK sequences from complex algae as well as a rhodophyte in order to investigate their evolutionary origin. All available PRK sequences were used for phylogenetic analyses and the significance of alternative topologies was estimated by the approximately unbiased test. Our analyses led to several astonishing findings. First, the close relationship of PRK genes of haptophytes, heterokontophytes, cryptophytes, and dinophytes (complex red lineage) supports a monophyletic origin of their sequences and hence their plastids. Second, based on PRK genes the complex red lineage forms a highly supported assemblage together with chlorophytes and land plants, to the exclusion of the rhodophytes. This green affinity is in striking contrast to the expected red algal origin and our analyses suggest that the PRK gene was acquired once via lateral transfer from a green alga. Third, surprisingly the complex green lineages leading to Bigelowiella and Euglena probably also obtained their PRK genes via lateral gene transfers from a red alga and a complex alga with red plastids, respectively.

Animals↗
PubMed2006

Protein targeting into the complex plastid of cryptophytes.

The cryptophyte Guillardia theta harbors a plastid surrounded by four membranes. This turns protein targeting of nucleus-encoded endosymbiont localized proteins into quite a challenge, as the respective precursors have to pass either all four membranes to reach the plastid stroma or only the outermost two membranes to enter the periplastidal compartment. Therefore two sets of nuclear-encoded proteins imported into the endosymbiont can be distinguished and their topogenic signals may serve as good indicators for studying protein targeting and subsequent transport across the outermost membranes of the cryptophyte plastid. We isolated genes encoding enzymes involved in two different biochemical pathways, both of which are predicted to be localized inside the periplastidal compartment, and compared their topogenic signals to those of precursor proteins for the plastid stroma, which are encoded on either the nucleus or the nucleomorph. By this and exemplary in vitro and in vivo analyses of the topogenic signal of one protein localized in the periplastidal compartment, we present new data implicating the mechanism of targeting and transport of proteins to and across the outermost plastid membranes. Furthermore, we demonstrate that one single, but conserved amino acid is the triggering key for the discrimination between nucleus-encoded plastid and periplastidal proteins.

Amino Acid Sequence↗
PubMed2007

Retrotransposons and tandem repeat sequences in the nuclear genomes of cryptomonad algae.

The cryptomonads are an enigmatic group of unicellular eukaryotic algae that possess two nuclear genomes, having acquired photosynthesis by the uptake and retention of a eukaryotic algal endosymbiont. The endosymbiont nuclear genome, or nucleomorph, of the cryptomonad Guillardia theta has been completely sequenced: at only 551 kilobases (kb) and with a gene density of approximately 1 gene/kb, it is a model of compaction. In contrast, very little is known about the structure and composition of the cryptomonad host nuclear genome. Here we present the results of two small-scale sequencing surveys of fosmid clone libraries from two distantly related cryptomonads, Rhodomonas salina CCMP1319 and Cryptomonas paramecium CCAP977/2A, corresponding to approximately 150 and approximately 235 kb of sequence, respectively. Very few of the random end sequences determined in this study show similarity to known genes in other eukaryotes, underscoring the considerable evolutionary distance between the cryptomonads and other eukaryotes whose nuclear genomes have been completely sequenced. Using a combination of fosmid clone end-sequencing, Southern hybridizations, and PCR, we demonstrate that Ty3-gypsy long-terminal repeat (LTR) retrotransposons and tandem repeat sequences are a prominent feature of the nuclear genomes of both organisms. The complete sequence of a 30.9-kb genomic fragment from R. salina was found to contain a full-length Ty3-gypsy element with near-identical LTRs and a chromodomain, a protein module suggested to mediate the site-specific integration of the retrotransposon. The discovery of chromodomain-containing retroelements in cryptomonads further expands the known distribution of the so-called chromoviruses across the tree of eukaryotes.

Cloning, Molecular↗