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MECHANIZATION OF CATALOGING PROCEDURES.

The Columbia-Harvard-Yale Medical Libraries Computerization Project has put into operation its mechanized procedure for the production of catalog cards. Cards produced are in final form ready to be filed into a card catalog. Catalogers prepare copy on a worksheet from which punched cards are punched. An IBM 1401 computer processes the decklets of punched cards on magnetic tape to produce the expanded decklets of punched cards needed to print the various packs of catalog cards required to go into different catalogs. Next, the computer punches the expanded decklets of cards to operate an 870 Document Writer, which types out the catalog cards in final form. Cost of cards ready to file is 12.5 cents per card.

Cataloging↗

Government documents and the online catalog.

Prior to planning for implementing the NOTIS system, the Vanderbilt Medical Center Library had not fully cataloged its government publications, and records for these materials were not in machine-readable format. A decision was made that patrons should need to look in only one place for all library materials, including the Health and Human Services Department publications received each year from the central library's Government Documents Unit. Beginning in 1985, these publications were added to the library's database, and the entire 7,200-piece collection is now in the online catalog. Working with these publications has taught the library much about the advantages and disadvantages of cataloging government documents in an online environment. It was found that OCLC cataloging copy is eventually available for most titles, although only about 10% of the records have MeSH headings. Staff time is the major expenditure; problems are caused by documents' irregular nature, frequent format changes, and difficult authority work. Since their addition to the online catalog, documents are used more and the library has better control.

Cataloging↗

Cooperative cataloging from the participants' point of view: a record of SUNY'S and Countway's experiences.

This paper describes the procedures and practices adopted for the cooperative cataloging program between NLM, Countway, and the Upstate Medical Center, Syracuse. Catalogers were trained by NLM, and the two libraries communicated data and queries by means of TWX and, later, IBM terminals. A description is given of how books are selected for cataloging, and details are given as to how conflicts in cataloging practice are settled. Further results of such cooperation are given, such as the addition of Upstate's holding symbol in Current Catalog. Statistics of work done are given, and impending changes are mentioned.

Boston↗

A union catalog of monographs: another approach.

The rationale for and the production of the 1977 TALON Union Catalog of Monographs are described. The 158,859 records include the existing machine-readable records for six health sciences libraries plus the cataloging of six others, converted by matching other data bases and by keypunching. The method and costs of production are discussed. Use of Computer-Output-Microfiche (COM) significantly decreased the cost and time required for publication. The $.076 unit cost per entry, with both author and title access for the COM method, is almost one-half the unit cost for the previous method which offered only main-entry access. The TALON Catalog compares favorably with the Midwest Medical Union Catalog. The addition of the title index significantly increases its usefulness. However, the unique feature of the TALON Catalog may be its machine-readable form which offers the potential for quantitative analyses of health sciences library collections. Such data may be essential for rational management of limited library funds.

Books↗

Catalog card production with a programmable terminal.

Application of a programmable terminal and printer to the cataloging task of a small medical library is described. The application is independent of a computer; the terminal is used in "local" mode only. Full sets of catalog cards are produced, following a single typing of descriptive cataloging data and tracings. Books can be cataloged the same day they are received. Actual cost per book is just over a dollar, for equipment rental, card stock, and the cataloger's time at the console, after call number, tracings, and main entry for the book have been determined.

Catalogs, Library↗

Virtual shelves. II: A unified catalog for a heterogeneous collection.

We describe a unified catalog of traditional and digital resources in medical informatics, using standard cataloging principles (AACR2), schemes (LCC), and coding formats (USMARC). The unified catalog integrates the bibliographic records of physical items in the heterogeneous collection with the bibliographic records of network accessible digital items, using prescribed cataloging formats to new effect. The unified catalog is collections-based. We do not use the MARC 856 field to specify the network location of a digital item. The location of a digital item is determined by mapping its call number through a location guide to a network address. This mapping is strictly isomorphic to the way the shelf location of a physical item is determined within the bounds of a controlled collection.

Book Classification↗

Rapid and accurate left ventricular surface generation from three-dimensional echocardiography by a catalog based method. Rapid LV surface generation by three-dimensional echo.

BACKGROUND: Quantitative analysis from three-dimensional (3D) echocardiography requires accurate reconstruction of left ventricular (LV) surfaces. This currently requires time-consuming manual image tracing. We describe and validate an alternative rapid method of generating LV surfaces. METHODS: A 3D-image set is acquired using transthoracic scanning. Images from five standard echo views are displayed and border points selected where anatomic landmarks are well defined. A LV surface is reconstructed as a convex weighted sum of LVs from a catalog of 80 LVs. The intersections of the surface with the five views are presented on these images. The routine may be rerun until the LV surface matches the images. One LV surface is generated in 3 min +/- 27 s. In 41 studies (19 normal, 15 previous infarction, seven cardiomyopathy) the volumes of the catalog-fit endocardial and epicardial surfaces were compared with volumes from surfaces reconstructed from full manual tracing. RESULTS: Over a wide range of LV volumes and ejection fraction (EF), the catalog-fit results correlated closely to those from manual tracing: end-diastolic volume (194 +/- 99 vs. 204 +/- 110 ml, y = 0.93x, R2 = 0.99, SEE = 19 ml, p < 0.001), end-systolic volume (122 +/- 95 vs. 131 +/- 106 ml, y = 0.92x, R2 = 0.99, SEE = 13 ml, p < 0.001), EF (42 +/- 16 vs. 42 +/- 15%, y = x, R2 = 0.99, SEE = 4%, p < 0.001) and mass (220 +/- 88 vs. 204 +/- 86 g, y = 1.1x, R2 = 0.99, SEE = 24 g, p < 0.001). The endocardial catalog surface was generated from an average of 20 points and three computational runs for both end-diastole and end-systole. CONCLUSIONS: The catalog method of LV reconstruction from 3D-echo provides accurate measurement of volume, EF and mass. The speed of the method is a major advantage.

Echocardiography, Three-Dimensional↗

Screening of rice genes from the cDNA catalog using the data obtained by protein sequencing.

The partial amino acid sequences of 121 rice proteins separated by two-dimensional gel electrophoresis (2D-PAGE), were determined for a protein sequence data file. In the Rice Genome Research Program (RGP), more than 20,000 cDNA clones randomly selected from rice cDNA libraries have been sequenced to construct a cDNA catalog. Complimentary DNAs encoding about 30% of proteins in the protein sequence data file could be identified in the catalog by computer search. It was deduced that 20,000-40,000 genes are present in the rice genome. Only half of about 20,000 cDNAs sequenced in the RGP, corresponding to 1/4-1/2 of genes present in the entire rice genome, should have unique sequences after considering gene redundancy. This is consistent with the fact that the cDNAs encoding about 30% of the sequenced proteins could be identified in the catalog. If the size of the cDNA catalog is enlarged further, cDNAs encoding all proteins separated by 2D-PAGE could be easily identified from the catalog by using the protein sequence data.

Amino Acid Sequence↗

[Comparison of time-oriented cost accounting catalogs to control a department of radiology].

PURPOSE: Within a hospital, the radiology department has taken over the role of a cost center. Cost accounting can be applied to analyze the costs for the performance of services. By assigning the expenditures of resources to the service, the cash value can directly be distributed to the costs of equipment, material and rooms. Time-oriented catalogs of services are predefined to calculate the number of the employees for a radiology department. Using our own survey of time data, we examined whether such catalogs correctly represent the time consumed in a radiology department. Only services relevant for the turnover were compared. MATERIALS AND METHODS: For 96 primary radiological services defined by the score-oriented German fee catalog for physicians (Gebuhrenordnung fur Arzte), a ranking list was made for the annual procedures in descending frequency order. According to the Pareto principle, the 11 services with the highest frequency were chosen and the time consumed for the technical and medical services was collected over a period of 2 months. This survey was compared with the time-oriented catalogs TARMED and EBM 2000plus. RESULTS: The included 11 relevant radiological services represented 80.3 % of the annual procedures of our radiology department. When comparing the technical services between the time-oriented catalogs and our own survey, TARMED gives a better description of the time consumed in 7 of the 11 services and EMB 2000plus in 3 services. When comparing the medical services, TARMED gives a better description of the time consumed in 6 of the 11 services and EBM 2000plus in 4 services. When averaging all the radiological services, TARMED overestimates the current number of physicians necessary for primary reading by a factor of 10.0 % and EBM 2000plus by a factor of 2.6 %. CONCLUSION: As to the time spent on performing the relevant radiological services, TARMED is slightly superior to describe the radiology department of a hospital than EBM 2000plus. For calculating the number of physicians necessary for primary reading, EBM 2000plus is superior to TARMED.

Accounting↗

ISCORS Catalog of References to Parameter Values and Distributions Used in Environmental Pathway Modeling for Cleanup of Sites Contaminated with Radioactivity.

Federal and state regulatory agencies that are concerned with issues of environmental management have adopted approaches toward policy-making that are dose- and risk-informed. To that end they (and others) have developed environmental models and computer codes to mimic the transport of contaminants along air, water, food-chain, and related pathways for estimating potential exposures, doses, and risks to individuals, populations, and ecosystems. Their calculations commonly find application in the planning of remediation, and thereafter in the demonstration of compliance with federal and state cleanup standards. As the models and codes have become more sophisticated, so also have requirements on the accuracy and level of detail of the numerical point values and probability distributions of environmental transfer factors and other parameters that serve as input parameters to them. In response to this growing need, the federal Interagency Steering Committee On Radiation Standards (ISCORS) and the Argonne National Laboratory have developed an on-line, national repository of information on parameter values and distributions of known provenance and demonstrated utility. The ISCORS Catalog of References to Parameter Values and Distributions Used in Environmental Pathway Modeling for Cleanup of Sites Contaminated with Radioactivity is a web-based, indexed compilation of references, compendia, databases, and other sources of peer-reviewed information on parameters. It does not itself contain numerical point values or distributions for any particular parameter, but rather it provides links or directions to sites or other published materials where such information can be obtained. Designed to be user-friendly, easily searchable, and readily up-dateable, the Catalog is being filled, after some initial priming, mainly through on-line submissions of proposed references by the Catalog users themselves. The relevant information on a proposed reference is submitted to ISCORS in a simple, standardized format; it is vetted (with acceptance criteria such as publication in a peer-reviewed technical journal, or appearance in a formally-issued federal agency report) and then added semi-automatically to the Catalog. Built around a relational database, the system offers subject- and text-search capabilities, provides information on parameter definitions and methods of measurement, on transport/exposure pathways, and on standard models and codes. The Catalog is intended for use by (and being populated by) the professionals, managers, and others involved or interested in the application of pathway modeling to estimate doses and risks associated with sites contaminated with radioactive or other hazardous materials.

Databases as Topic↗

A COMPUTER SYSTEM FOR A UNION CATALOG: THEME AND VARIATIONS.

This article describes a computer system for the generation and maintenance of a union catalog of periodicals and for printouts of both the entire file and selected portions. Although the system was designed to meet the specifications of the Union Catalog of Medical Periodicals of New York, its use is not limited. Only the basic file maintenance program is indispensable; the subsidiary programs may be used as needed. The scope and content of the catalog are determined by the input. The preparation of the input is described in detail, with comment on the keypunching of library records. Applications to other kinds of catalogs are suggested.

Catalogs, Union as Topic↗

Mechanization of library procedures in the medium-sized medical library. IV. Physical characteristics of the acquisitions-cataloging record.

Acquisitions-Cataloging records stored on magnetic tape by the Washington University School of Medicine Library were examined to determine frequency and average length of record components and their alphabetization requirements in a book catalog. Data from this study of 4,708 records will be used in adaptation of the Library's computer-based cataloging system to greater machine capabilities. The first of these two papers compares measurements found for WUSML records with those reported in studies of conventional catalog cards. The number of sorting positions used to alphabetize entries and causes of sort failure are examined in the second paper (Number V) which will be found on page 71 of this issue of the BULLETIN.

Cataloging↗

An online tests catalog for clinical laboratories.

An attempt to integrate an online catalog for clinical laboratory tests in a university hospital medical computing environment is presented here. The need for such a catalog is evident, due to the dynamic changes in the area, new tests, and new test methods. Physicians are able to access the catalog through department terminals. The catalog has been designed and implemented as a relational database, including seven tables. Context-sensitive help screens are available at any step, as well as specific instructions for each laboratory.

Catalogs as Topic↗

Catalog-library approach for the rapid and sensitive structural elucidation of oligosaccharides.

We obtained the nearly complete structural elucidation of oligosaccharide components, including sequence, linkage, and even stereochemistry in the picomolar levels. The "catalog-library" approach is used for elucidating the structures of minor components in a mixture of oligosaccharides. Oligosaccharides released from a family of glycoproteins are often composed of a small finite set of monosaccharides. In this regard, the numerous oligosaccharide species are analogous to the products found in syntheses involving combinatorial libraries. The great structural diversity in the library is the result of the nearly infinite combinations in which even a small number of monosaccharides can be arranged. Fortunately, structural similarities exist between different oligosaccharides, as specific substructural motifs are preserved among different compounds. We propose that a catalog of substructural motifs can be identified and characterized by collision-induced dissociation mass spectrometry. The catalog is constructed from a set of known compounds that have been fully structurally elucidated by, for example, nuclear magnetic resonance. The catalog consists of the characteristic fragmentation patterns belonging to a set of specific substructural motifs. Collision-induced dissociation is used to determine the presence of these motifs and reconstruct the structures of less abundant components.

Carbohydrate Conformation↗

A comprehensive reference catalog of human skin DNA virome reveals novel viral diversity and microenvironmental influences.

UNLABELLED: Human skin serves as a dynamic habitat for a diverse microbiome, including a complex array of viruses whose diversity and roles are not fully understood. A total of 2,760 skin metagenomes from 6 published skin studies were collected. A skin virome catalog was constructed using standard methods in the viromics field. Viral characteristics were identified through cross-cohort meta-analysis and used to characterize viral features across different skin environments. We identified 20,927 viral sequences, which clustered into 2,873 viral operational taxonomic units (vOTUs), uncovering a substantial breadth of viral diversity on human skin. The results also highlight significant differences in viral communities that are associated with varying skin microenvironments. The oily skin is enriched in Papillomaviridae, the dry skin area is enriched in Autographiviridae and Inoviridae, and the moist skin is enriched in Herelleviridae. We also investigated the relationship between bacteriophages and bacteria on the skin surface. We found that skin bacteria such as Pseudomonas, Klebsiella, and Staphylococcus are predicted to be infected by phages from the class Caudoviricetes. This comprehensive skin DNA viral catalog significantly advances our understanding of the virome's role within the skin ecosystem. IMPORTANCE: This study presents a comprehensive reference catalog of the human skin DNA virome, constructed from 2,760 metagenomic datasets collected globally. It identified 20,927 viral sequences, with 90.85% representing previously unknown viruses, greatly expanding our understanding of skin viral diversity. The findings reveal significant differences in viral communities between distinct skin microenvironments (oily, dry, and moist) and highlight close interactions between bacteriophages and their bacterial hosts, suggesting a potential role for the virome in maintaining microbial balance and skin health. This extensive skin viral catalog constitutes a crucial resource for future epidemiological and therapeutic research, potentially facilitating the development of novel phage therapies and diagnostic markers for skin disorders.

Humans↗

The genesis of a catalog of oral health-related surveys: locating oral health-related datasets.

The National Institute of Dental and Craniofacial Research (NIDCR), in collaboration with the Division of Oral Health, Centers for Disease Control and Prevention (DOH, CDC), has established a Dental, Oral and Craniofacial Data Resource Center (DRC). One element of the DRC is the Catalog of Surveys Related to Oral Health. The Catalog is a searchable electronic database that includes federal, state, international, and privately sponsored surveys and other datasets. Its purpose is to make researchers aware of surveys that have been conducted and to highlight features of complex surveys that relate to oral health. Other components of the DRC include an Archive of Procedures and Methods, Archive of Procedures and Methods Used in Oral Health Surveys, which is linked to the Catalog; an Annual Report, Oral Health U.S., 2002; and a data warehouse of acquired datasets. A Web-based statistical query system related to oral health is also under development. It is the intention of the DRC to meet the needs of NIDCR and DOH, CDC staff as well as other researchers interested in the status of oral health. The Catalog is available on CD-ROM at no cost and in the future will be made available through the NIDCR Web site.

Catalogs, Library↗

Cost-performance analysis of cataloging and card production in a medical center library.

The unit cost of cataloging current English language monographs was studies and compared with the cost of purchasing catalog cards from a commercial source. Two hypotheses were proposed: (1) in-library costs for cataloging and card production are higher than those for the purchased-card method; (2) throughput time is faster for the in-library method. In addition, the data can be used to develop an analytical cost-performance model for administrative purposes. The data presented support the hypotheses. The model developed provides a mechanism for arriving at a cost for different levels of service and can be used to measure the performance of other alternative methods of cataloging. Implications for the use of CATLINE are discussed and suggestions for further studies are described.

Cataloging↗

An assessment of the visibility of MeSH-indexed medical web catalogs through search engines.

Manually indexed Internet health catalogs such as CliniWeb or CISMeF provide resources for retrieving high-quality health information. Users of these quality-controlled subject gateways are most often referred to them by general search engines such as Google, AltaVista, etc. This raises several questions, among which the following: what is the relative visibility of medical Internet catalogs through search engines? This study addresses this issue by measuring and comparing the visibility of six major, MeSH-indexed health catalogs through four different search engines (AltaVista, Google, Lycos, Northern Light) in two languages (English and French). Over half a million queries were sent to the search engines; for most of these search engines, according to our measures at the time the queries were sent, the most visible catalog for English MeSH terms was CliniWeb and the most visible one for French MeSH terms was CISMeF.

Abstracting and Indexing↗