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PubMed1978

Genetic dominance for low activity in infant mice.

Locomotor activity of 2,140 four-day-old inbred, hybrid, and wild mice was measured. Consonant with the prediction that high rates of locomotor activity would be maladaptive in infant mice, hybrids were less active than inbred lines. A triple test cross analysis indicated low heritability and nearly complete dominance toward low activity. Mice from wild stock were even less active than hybrids, which suggests that selection pressures for low infantile activity have relaxed during laboratory domestication. A test is described for estimating changes in selection pressures resulting from laboratory rearing.

Animals↗
PubMed1993

[Use of GnRH to stimulate the reproductive function in domestic ruminants].

Therapeutic effects of GnRH or its analogs have been tested in various physiological and pathological situations in domestic ruminants. Without any previous selection based on clinical observations, these treatments have a low efficiency to improve reproductive parameters. When used to induce ovulation in anoestrous females, GnRH or its analogs are less efficient than progestagen treatments associated with PMSG. On the contrary, GnRH can be used in females bearing follicular cysts or for the treatment of repeat breeders. Association of GnRH or its analogs to superovulation treatments is a new field of investigation. Additional experiments are necessary to show if it is possible to improve the response of superovulated females with such treatments.

Animals↗
PubMed2006

Domestication history in the Medicago sativa species complex: inferences from nuclear sequence polymorphism.

DNA sequence polymorphism carries genealogical information and allows for testing hypotheses on selection and population history, especially through coalescent-based analysis. Understanding the evolutionary forces at work in plant domestication and subsequent selection is of critical importance for the management of genetic resources. In this study, we surveyed DNA sequence diversity at two assumed neutral nuclear loci in the wild-domesticated species complex of alfalfa (Medicago sativa L.). A high level of polymorphism was detected. The domesticated pool contains on average 31% less diversity than the wild pool, but with a high heterogeneity among loci. Coalescent simulations of the domestication process showed that this result cannot be explained by assuming a constant population size but is rather consistent with a demographic bottleneck during domestication. A very low level of divergence was detected between the wild and the domesticated forms as well as between the related subspecies of the M. sativa species complex. However, the originality of the Spanish wild populations, already observed based on mitochondrial DNA polymorphism, was confirmed. These results, together with patterns of intrapopulation polymorphism, suggest that nuclear sequence polymorphism could be a promising tool, complementary to mitochondrial DNA and phenotypic evaluations, to investigate historical demographic and evolutionary processes.

Biological Evolution↗
PubMed2001

Effects of an acute stressor on fear and on the social reinstatement responses of domestic chicks to cagemates and strangers.

Genetic selection for appropriate levels of sociality (motivation to be with conspecifics) could benefit poultry welfare and performance. Runway tests that require chicks to traverse a corridor in order to reach other chicks in a goal box are commonly used to measure this behavioural trait. However, we need to determine if the chicks' responses in such tests are sensitive to certain experiential variables before we can recommend possible selection criteria for future breeding programmes. The present study focused on fear and on the identity of the stimulus birds. Broiler chicks either remained undisturbed or were exposed to an acute stressor (mechanical restraint) before their tonic immobility fear responses were measured 1h later in Experiment 1. Exposure to the stressor significantly prolonged tonic immobility and, hence, presumably, underlying fear levels. In Experiment 2, the responses of stressed chicks and undisturbed controls were assessed when they were tested individually in a runway with a goal box containing either familiar or unfamiliar chicks of the same age. Our finding that stressed chicks emerged from the start box sooner and spent longer near the stimulus birds suggests that exposure to a frightening event increased social reinstatement motivation. Furthermore, social affiliation was more pronounced when the goal box contained familiar cagemates rather than strange chicks, regardless of prior treatment. This finding demonstrates that broiler chicks that were housed in groups of twelve can discriminate between familiar and unfamiliar conspecifics encountered in novel surroundings. Thus, sociality was positively associated with fearfulness and broilers clearly showed social discrimination in runway tests. These findings highlight the dangers of disregarding variables, such as fear and the capacity for social recognition in tests of social motivation. We strongly recommend that exposure to frightening events prior to test should be avoided and that the identity of the birds in the runway goal box should be standardized, i.e. either familiar or unfamiliar, and noted.

Journal Article↗
PubMed2001

Developing a model based decision support tool for the identification of sustainable treatment options for domestic wastewater.

To enable decision makers to select sustainable wastewater treatment systems, insight into the sustainability of a wide variety of systems should be provided in a transparent way leaving room for adaptation and interpretation according to the local situation. To provide this insight a structured methodology comparing wastewater treatment systems with respect to sustainability is defined. Similar to life cycle assessment (LCA) three phases can be distinguished: (1) goal and scope definition, (2) inventory analysis, and (3) optimisation and results. In the goal and scope definition we set the system boundaries to include most of the water cycle and part of the food cycle. Furthermore, we defined a multi-disciplinary set of sustainability indicators including technical, economic, environmental, and socio-cultural aspects. In the inventory analysis these sustainability indicators are quantified using simple static models of wastewater unit operations. Selection of unit operations results in a model of a complete wastewater treatment system. In the optimisation phase the decision maker can weigh the different sustainability indicators and select sustainable options through integer programming.

Decision Support Techniques↗
PubMed1992

Campylobacter helveticus sp. nov., a new thermophilic species from domestic animals: characterization, and cloning of a species-specific DNA probe.

An atypical group of thermophilic catalase-negative Campylobacter strains, the 'CH' (Swiss) group, can be recovered from faeces of domestic cats and dogs after selection by filtration, or with the antibiotic cefoperazone. This group of strains shows no relative DNA homology with any species in rRNA superfamily VI (Vandamme et al., 1991, International Journal of Systematic Bacteriology 41, 88-103) except with four thermophilic Campylobacter species, notably C. upsaliensis. The group is homogeneous and possesses a DNA base composition, cellular morphology at the electron microscope level and phenotypic properties characteristic of Campylobacter. Nonetheless it is distinct from known species of Campylobacter in terms of conventional bacteriological tests, total cellular protein profile, rRNA gene profile, and genomic DNA homology. On the basis of an integrated study of phenotype and genotype, we conclude that these bacteria constitute a previously undescribed species for which we propose the name Campylobacter helveticus sp. nov. A species-specific recombinant DNA probe was cloned from the designated type strain (NCTC 12470) for use in identification and further analysis of the epidemiology, pathogenicity and transmission of C. helveticus.

Animals↗
PubMed1996

Prevalence of domestic violence among patients attending a hospital emergency department.

A cross-sectional study was conducted to determine the prevalence of domestic violence victims among patients using emergency services at Sydney's Royal North Shore Hospital, in an affluent urban area of New South Wales. This study used a self-administered questionnaire (used in a similar study at the Royal Brisbane Hospital) to investigate the history of domestic violence among patients attending the emergency department during 64 randomly selected nursing shifts in October-November 1994. Adult domestic violence was reported by 19.3 per cent of females and 8.5 per cent of males, confirming the results of the Brisbane study. Evidence for underreporting was found: 4 per cent of females and 6.3 per cent of males who did not report being victims revealed experiences of abuse on nine measures of types of violence, including six taken from the Conflict Tactics Scale. Results supported evidence from other studies suggesting that experience of abuse as a child is a risk factor for being in abusive relationships as an adult. In the past, comparison of results has been limited because of variation in definitions of domestic violence; this has been overcome by intentional replication of the Brisbane study. The study was enhanced by inclusion of patients from non-English-speaking backgrounds and a cohort of parents of children attending. Similar prevalence estimates were found in these groups. Results have implications for the detection and treatment of victims of domestic violence across all strata of society and have potential to raise awareness and affect attitudes towards this significant community problem.

Adolescent↗
PubMed2005

A genome-wide analysis of differentiation between wild and domesticated Phaseolus vulgaris from Mesoamerica.

Lack of introgression or divergent selection may be responsible for the maintenance of phenotypic differences between sympatric populations of crops and their wild progenitors. To distinguish between these hypotheses, amplified fragment length polymorphism markers were located on a molecular linkage map of Phaseolus vulgaris relative to genes for the domestication syndrome and other traits. Diversity for these same markers was then analyzed in two samples of wild and domesticated populations from Mesoamerica. Differentiation between wild and domesticated populations was significantly higher in parapatric and allopatric populations compared to sympatric populations. It was also significantly higher near genes for domestication compared to those away from these genes. Concurrently, the differences in genetic diversity between wild and domesticated populations were strongest around such genes. These data suggest that selection in the presence of introgression appears to be a major evolutionary factor maintaining the identity of wild and domesticated populations in sympatric situations. Furthermore, alleles from domesticated populations appear to have displaced alleles in sympatric wild populations, thus leading to a reduction in genetic diversity in such populations. These results also provide a possible experimental framework for assessing the long-term risk of transgene escape and the targeting of transgenes inside the genome to minimize the survival of these transgenes into wild populations following introduction by gene flow.

Chromosome Mapping↗
PubMed2006

How fast was wild wheat domesticated?

Prehistoric cultivation of wild wheat in the Fertile Crescent led to the selection of mutants with indehiscent (nonshattering) ears, which evolved into modern domestic wheat. Previous estimates suggested that this transformation was rapid, but our analyses of archaeological plant remains demonstrate that indehiscent domesticates were slow to appear, emerging approximately 9500 years before the present, and that dehiscent (shattering) forms were still common in cultivated fields approximately 7500 years before the present. Slow domestication implies that after cultivation began, wild cereals may have remained unchanged for a long period, supporting claims that agriculture originated in the Near East approximately 10,500 years before the present.

Agriculture↗
PubMed1997

Telephone follow-up for case finding of domestic violence in an emergency department.

OBJECTIVE: To determine whether telephone follow-up of selected female patients seen in an urban ED would improve domestic violence (DV) case finding. METHODS: A prospective, cross-sectional study was conducted on consecutive female patients between the ages of 16 and 65 years treated in an urban trauma center during July and August 1995. Record review identified those patients with conditions suggesting increased risk for DV: injury; substance abuse; complaints or diagnoses related to stress, anxiety, depression, or panic attack; or complaints of headache, nonspecific abdominal pain, generalized fatigue, or numbness lasting > 1 week. Attempts were made to telephone all patients who had high-risk presentations within 3 days of their emergency visits. Patients were contacted by a trained interviewer regarding the circumstances of their visits. RESULTS: There were 142 (9%) high-risk presentations out of 1,500 ED visits by women. Of these high-risk visits, 68 patients denied DV, 19 patients did no speak English, 16 patients gave an incorrect telephone number, 18 patients could not be reached after 3 telephone calls, and 6 patients did not give a telephone number. Of the remaining 15 patients, 5 were diagnosed at the initial visit as having experienced DV, and 10 admitted on the follow-up call that the visit had been related to DV or emotional stress at home. CONCLUSION: A structured interview, conducted via telephone in follow-up of released ED patients, identified an additional 10 victims out of 142 high-risk presentations and 1,500 total ED presentations. This approach is labor-intensive, with a relatively low yield. Nonetheless, prospective identification of selective high-risk cases by physicians, coupled with subsequent social service telephone contact, may be a complement in department case finding.

Adolescent↗
PubMed1982

Isolation, culture, and preliminary characterization of mucin-producing cells from trachea of the domestic fowl.

Primary cell cultures enriched in mucin-producing cells and basal cells were established from the trachea of the domestic fowl. Epithelial cells were selectively removed from the trachea after incubation in 0.1% pronase/0.1% EDTA in Moscona's saline. The majority of the ciliated cells were removed during the initial 30 minutes of incubation. After 50 minutes of incubation, aggregates of mucin-producing cells and basal cells were removed in large numbers. The cellular aggregates rapidly attached to a collagen-coated substratum and the cells spread out on the culture surface. The mucin-producing cells retained their AB/PAS-reactive secretory granules. The basal cells replicated and as the culture approached confluency, these cells developed a fine dusting of AB/PAS-reactive material; later, larger secretory granules appeared in the cells. These observations suggest that mucin-producing cells are capable of retaining their AB/PAS-reactive secretory products in primary culture and that basal cells are capable of differentiating into mucin-producing cells in vitro.

Animals↗
PubMed2005

Molecular phylogeny of the domesticated silkworm, Bombyx mori, based on the sequences of mitochondrial cytochrome b genes.

Pupae from the Chinese wild mulberry silkworm, Bombyx mandarina, and 11 representative strains of the domesticated silkworm, Bombyx mori were selected for preparation of mitochondrial DNA. The 5'-end fragments of cytochrome b genes (Cytb) were generated by polymerase chain reaction products and sequenced directly. The homologous sequences of the Japanese B. mandarina and three strains of B. mori were from the GenBank database. The sequences of the 16 silkworm strains were analysed with DNASTAR software and a phylogenic tree was constructed using PHYLIP software. The result showed that: (i) The sequence divergence between the strains of B. mori and the Japanese B. mandarina was larger (5.4%-5.8%) compared with that between strains of B. mori and the Chinese B. mandarina (0.8% -1.9%). Analysis of clustering also showed that the sequences of B. mori strains and Chinese B. mandarina clustered into group (B group), while that of Japanese B. mandarina (A group) was outside this cluster. This may be evidence for the hypothesis that B. mori originated from Chinese B. mandarina. (ii) Among 14 strains of B. mori, sequence divergence was small and the most divergence was seen between strains Yanhe-1 and Chuxiong, whose sequences branched off from those of the other B. mori strains on the phylogenetic tree. From this and from historical records, we infer that the strains Yanhe-1 and Chuxiong originated independently from southwest China.

Animals↗
PubMed2003

An allele of dihydroflavonol 4-reductase associated with the ability to produce red anthocyanin pigments in potato (Solanum tuberosum L.).

The potato R locus is necessary for the production of red pelargonidin-based anthocyanin pigments in any tissue of the plant, including tuber skin and flower petals. The production of pelargonidins in plants requires the activity of dihydroflavonol 4-reductase (DFR) to catalyze the reduction of dihydrokaempferol into leucopelargonidin. To test the hypothesis that potato R encodes DFR, portions of both dfr alleles were sequenced from a diploid potato clone known to be heterozygous Rr. Sequence comparison revealed a polymorphic BamHI restriction site. The presence or absence of this site was monitored in three diploid populations that segregated for R, as well as in a wide range of tetraploid breeding clones and cultivars, by amplifying a fragment of dfr and digesting the products with BamHI. An identically sized dfr restriction fragment lacking the BamHI site was present in all potato clones that produced red anthocyanin pigments, while the same fragment was absent in many potato clones with white tuber skin and flowers. An independent RFLP test using DraI to detect sequence polymorphism was performed on a subset of the potato clones. This test also revealed dfr-derived bands that were present in all red-colored potatoes and absent in several white clones. The presence of shared restriction fragments in all red-colored potatoes provides strong evidence that R does indeed code for DFR. The data are also consistent with a 48 year-old hypothesis by Dodds and Long, that R was selected just once during the domestication of potato. A cDNA clone corresponding to the red allele of dfr was sequenced and compared to two other alleles. The red allele is predicted to encode a 382 amino acid protein that differs at ten amino acid positions from the gene products of the two alternative alleles. Several of these differences map in a region known to influence DFR substrate specificity in Gerbera.

Alcohol Oxidoreductases↗
PubMed1992

Interaction between cortisol and cortisol-binding protein in silver foxes (Vulpes fulvus).

1. Selection of silver foxes for domestic behaviour resulted in the parallel lowering of both cortisol and cortisol-binding protein (CBP) levels in the blood plasma. 2. During seasonal cycles (summer-winter) and after stress an increase in cortisol levels is followed by a decrease in CBP activity. 3. It is concluded that there are two types of interaction between cortisol and CBP in silver foxes: parallel changes in the process of domestication and opposite changes under the influence of environmental factors.

Animals↗
PubMed2005

Individualization of tiger by using microsatellites.

In investigating criminal cases of poaching and smuggling involving tigers (Panthera tigris), the number of tiger individuals involved is critical for determining the penalty. Morphological methodologies do not often work because tiger parts do not possess the distinctive characteristics of the individual. Microsatellite DNAs have been proved a reliable marker for the individualization of animals. Seven microsatellite loci derived from domestic cat (Felis catus) were selected to individualize tigers, namely F41, F42, F146, Fca304, Fca391, Fca441 and Fca453. A reference population containing 37 unrelated tigers were used to investigate alleles, allelic frequencies, genotypes and genotype frequencies of each locus. Consequently, the data was used to assess the validity of the combination of seven loci for tiger individualization. All loci were polymorphic and easy to amplify. Three out of the seven loci were significantly departure from the Hardy-Weinberg Equilibrium (P < 0.05). Cumulative discrimination power (DP) calculated with observed genotype frequencies was 0.99999789. Match probability of an individual in the reference population with a random individual in seven loci ranged from 7.34 x 10(-9) to 2.77 x 10(-5). This suggests that combining the seven microsatellite loci provides desirable power to individualize tigers. The combination of seven loci was applied to a case of tiger bone smuggling. Genotypes of all samples were identical in all seven loci, and the P(M) of the evidence samples in the seven loci hit 5.63 x 10(-7), provided evidence that the bones belong to a single tiger.

Animals↗
PubMed2005

Human-like social skills in dogs?

Domestic dogs are unusually skilled at reading human social and communicative behavior--even more so than our nearest primate relatives. For example, they use human social and communicative behavior (e.g. a pointing gesture) to find hidden food, and they know what the human can and cannot see in various situations. Recent comparisons between canid species suggest that these unusual social skills have a heritable component and initially evolved during domestication as a result of selection on systems mediating fear and aggression towards humans. Differences in chimpanzee and human temperament suggest that a similar process may have been an important catalyst leading to the evolution of unusual social skills in our own species. The study of convergent evolution provides an exciting opportunity to gain further insights into the evolutionary processes leading to human-like forms of cooperation and communication.

Animal Communication↗