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At least 343 records · Page 19Linked to original sources
PubMed1977

Hydrodynamic theory of swimming of flagellated microorganisms.

A theory of the type commonly used in polymer hydrodynamics is developed to calculate swimming properties of flagellated microorganisms. The overall shape of the particle is modeled as an array of spherical beads which act, at the same time, as frictional elements. The fluid velocity field is obtained as a function of the forces acting at each bead through Oseen-type, hydrodynamic interaction tensors. From the force and torque equilibrium conditions, such quantities as swimming velocity, angular velocity, and efficiency can be calculated. Application is made to a spherical body propelled by a helical flagellum. A recent theory by Lighthill, and earlier formulations based on tangential and normal frictional coefficients of a curved cylinder, CT and CN, are analyzed along with our theory. Although all the theories predict similar qualitative characteristics, such as optimal efficiency and the effect of fluid viscosity, they lead to rather different numerical values. In agreement with Lighthill, we found the formalisms based on CN and CT coefficients to be somewhat inaccurate, and head-flagellum interactions are shown to play an important role.

Flagella↗
PubMed1994

Hydrodynamics of horseradish peroxidase revealed by global analysis of multiple fluorescence probes.

Previous fluorescence studies of horseradish peroxidase conjugated with protoporphyrin IX suggested that the protein behaved hydrodynamically as a prolate ellipsoid of axial ratio 3 to 1. The present study, designed to further investigate the hydrodynamics of this protein, exploits a series of probes, noncovalently bound to the heme binding site of apo-horseradish peroxidase, having different orientations of the excitation and emission transition dipoles with respect to the protein's rotational axes. The probes utilized included protoporphyrin IX and the naphthalene probes 1-anilino-8-naphthalene sulfonate, 2-p-toluidinyl-6-naphthalene sulfonate, and 4,4'-bis(1-anilino-8-naphthalene sulfonate). Time-resolved data were obtained using multifrequency phase fluorometry. The global analysis approach to the determination of molecular shape using multiple probes was evaluated by utilizing all data sets while maintaining a constant molecular shape for the protein. The results indicated that, in such analyses, probes exhibiting a single exponential decay and limited local motion have the major weight in the evaluation of the axial ratio. Probes that show complex decay patterns and local motions, such as the naphthalene derivatives, give rise to significant uncertainties in such global treatments. By explicitly accounting for the effect of such local motion, however, the shape of the protein can be reliably recovered.

Binding Sites↗
PubMed1994

Receptor-mediated binding of IgE-sensitized rat basophilic leukemia cells to antigen-coated substrates under hydrodynamic flow.

The physiological function of many cells is dependent on their ability to adhere via receptors to ligand-coated surfaces under fluid flow. We have developed a model experimental system to measure cell adhesion as a function of cell and surface chemistry and fluid flow. Using a parallel-plate flow chamber, we measured the binding of rat basophilic leukemia cells preincubated with anti-dinitrophenol IgE antibody to polyacrylamide gels covalently derivatized with 2,4-dinitrophenol. The rat basophilic leukemia cells' binding behavior is binary: cells are either adherent or continue to travel at their hydrodynamic velocity, and the transition between these two states is abrupt. The spatial location of adherent cells shows cells can adhere many cell diameters down the length of the gel, suggesting that adhesion is a probabilistic process. The majority of experiments were performed in the excess ligand limit in which adhesion depends strongly on the number of receptors but weakly on ligand density. Only 5-fold changes in IgE surface density or in shear rate were necessary to change adhesion from complete to indistinguishable from negative control. Adhesion showed a hyperbolic dependence on shear rate. By performing experiments with two IgE-antigen configurations in which the kinetic rates of receptor-ligand binding are different, we demonstrate that the forward rate of reaction of the receptor-ligand pair is more important than its thermodynamic affinity in the regulation of binding under hydrodynamic flow. In fact, adhesion increases with increasing receptor-ligand reaction rate or decreasing shear rate, and scales with a single dimensionless parameter which compares the relative rates of reaction to fluid shear.

Animals↗
PubMed1996

Molecular dynamics of the transition from L-selectin- to beta 2-integrin-dependent neutrophil adhesion under defined hydrodynamic shear.

Homotypic adhesion o2 neutrophils stimulated with chemoattractant is analogous to capture on vascular endothelium in that both processes depend on L-selectin and beta 2-integrin adhesion receptors. Under hydrodynamic shear, cell adhesion requires that receptors bind sufficient ligand over the duration of intercellular contact to withstand hydrodynamic stresses. Using cone-plate viscometry to apply a uniform linear shear field to suspensions of neutrophils, we conducted a detailed examination of the effect of shear rate and shear stress on the kinetics of cell aggregation. A collisional analysis based on Smoluchowski's flocculation theory was employed to fit the kinetics of aggregation with an adhesion efficiency. Adhesion efficiency increased with shear rate from approximately 20% at 100 s-1 to approximately 80% at 400 s-1. The increase in adhesion efficiency. Adhesion efficiency increased with shear rate from approximately 20% at 100 s-1 to approximately 80% at 400 s-1. The increase in adhesion efficiency with shear was dependent on L-selectin, and peak efficiency was maintained over a relatively narrow range of shear rates (400-800 s-1) and shear stresses (4-7 dyn/cm2). When L-selectin was blocked with antibody, beta 2-integrin (CD11a, b) supported adhesion at low shear rates (< 400 s-1). The binding kinetics of selectin and integrin appear to be optimized to function within discrete ranges of shear rate and stress, providing an intrinsic mechanism for the transition from neutrophil tethering to stable adhesion.

Antibodies, Monoclonal↗
PubMed1997

Construction of hydrodynamic bead models from high-resolution X-ray crystallographic or nuclear magnetic resonance data.

Computer software such as HYDRO, based upon a comprehensive body of theoretical work, permits the hydrodynamic modeling of macromolecules in solution, which are represented to the computer interface as an assembly of spheres. The uniqueness of any satisfactory resultant model is optimized by incorporating into the modeling procedure the maximal possible number of criteria to which the bead model must conform. An algorithm (AtoB, for atoms to beads) that permits the direct construction of bead models from high resolution x-ray crystallographic or nuclear magnetic resonance data has now been formulated and tested. Models so generated then act as informed starting estimates for the subsequent iterative modeling procedure, thereby hastening the convergence to reasonable representations of solution conformation. Successful application of this algorithm to several proteins shows that predictions of hydrodynamic parameters, including those concerning solvation, can be confirmed.

Algorithms↗
PubMed1997

The size and shape of caldesmon and its fragments in solution studied by dynamic light scattering and hydrodynamic model calculations.

The size and the shape of caldesmon as well as its 50-kDa central and 19-kDa C-terminal fragments were investigated by photon correlation spectroscopy. The hydrodynamic radii, which have been calculated from the experimentally obtained translational diffusion coefficients, are 9.8 nm, 6.0 nm, and 2.9 nm, respectively. Moreover, the experimental values for the translational diffusion coefficients are compared with results obtained from hydrodynamic model calculations. Detailed models for the structure of caldesmon in solution are derived. The contour length is about 64 nm for all of the models used for caldesmon.

Animals↗
PubMed2000

Hydrodynamic aspects of slurry packing processes in microcolumn liquid chromatography.

A Stokesian dynamics computer simulation based method is presented for the estimation of the bed porosity of slurry-packed capillary liquid chromatography (LC) columns. A colloidally well-described reversed-phase stationary phase-slurry liquid suspension was used as a model system. The applied simulation method takes into account the velocity of the slurry and colloidal interaction forces, as well as inter-particle hydrodynamic interactions. The predicted bed porosities suggest that a lower slurry velocity leads to a denser packing structure due to the increased effect of colloidal repulsion effects. The results of the simulations were compared with the external porosity and chromatographic performance of capillary LC columns that were packed at different filtration and compaction pressures. However, the trends that were observed in the experimental results suggest that hydrodynamic packing parameters have no or little effect on the chromatographic performance of capillary LC columns. Within the experimental parameter window, the chromatographic performance and the column porosity were not influenced by the filtration and compaction pressure, nor by the duration of the compaction process.

Chromatography, Liquid↗
PubMed1984

Experimental observations of the hydrodynamic behavior of solvent systems in high-speed counter-current chromatography. III. Effects of physical properties of the solvent systems and operating temperature on the distribution of two-phase solvent systems.

Statistical studies were made to correlate the hydrodynamic behavior of two-phase solvent system in counter-current chromatography (CCC) to their physical properties including interfacial tension, viscosity, and the difference in density of the two phases. Settling time measured under unit gravity provided a reliable numerical index for the hydrodynamic behavior of the solvent systems in a centrifugal force field. Viscosity and settling time were strongly correlated (correlation coefficient, r = +0.88) while interfacial tension (r = -0.65) and phase density difference (r = -0.45) showed moderate and weak correlation, respectively. Studies of the effect of temperature on settling time as well as a preliminary apparatus operated at higher temperature show that raising the temperature will improve the performance of high-speed CCC.

Chromatography, High Pressure Liquid↗
PubMed1997

Studies of the hydrodynamic volume changes that occur during refolding of lysozyme using size-exclusion chromatography.

A size-exclusion chromatography-based refolding process (SEPROS) has successfully been used to renature lysozyme at high concentrations. This process is based on the different hydrodynamic characteristics of folded and unfolded proteins and their interaction with gel filtration media. In this paper we have quantified the changes in Stokes radius, hydrodynamic volume and partition coefficient that occur when lysozyme is refolded from urea in a size-exclusion column. In 8 M urea partially folded and unfolded lysozyme were resolved using Superdex 75 HR. These two species were present at approximately the same concentration. As the urea concentration was decreased the unfolded species gradually decreased until at 4 M urea only partially folded lysozyme remained, which continued to fold on further reduction of the urea concentration. Using these results the initial mechanism for size exclusion chromatography protein refolding has been confirmed.

Buffers↗
PubMed1998

Numerical simulation of band-broadening during hydrodynamic relaxation in frit-inlet field-flow fractionation channels.

The frit-inlet technique is a promising implementation of hydrodynamic relaxation of samples in field-flow fractionation (FFF). The optimization of the process is of great importance in order to maximize overall system efficiency. The mechanism of band-broadening that takes place during hydrodynamic relaxation has been examined using a three-dimensional simulation of the flow inside the triangular end-piece of the channel. This is the first time this contribution to band-broadening has been considered and studied. Particle trajectories in the absence of a transverse field were numerically calculated, thereby isolating this effect from the familiar field-driven relaxation effect. As a first step towards an optimization of the system, the influence of the length of frit element was examined. Band-broadening was examined by determining the number of particles passing through the triangular end-piece as a function of transit time for a uniform particle distribution at the injection point. Due to the complexity of the flow patterns within the system, it is concluded that such numerical simulations are necessary for the optimization of the design and operation of this type of channel.

Algorithms↗
PubMed2003

Hydrodynamic drag force exerted on activated sludge floc at intermediate Reynolds number.

We hung the activated sludge flocs on an elastic nylon stick and then subjected it to a uniform water flow and measured its displacement. The hydrodynamic drag force exerted on the floc was subsequently estimated, both for cationic flocculated flocs and for flocculated and then frozen/thawed flocs. A confocal laser scanning microscope (CLSM) was employed to probe the interior structure of flocs. Polyelectrolyte flocculation leads to a compact global structure, and hence high drag force exerted on the floc by water. The corresponding C(D)Omega value at Re=12-27 for flocs ranges from 1.58 to 3.61. Fast freezing would little affect the hydrodynamic drag force. Slow freezing, in contrast, considerably consolidated the floc structure and hence presented impermeable sphere-like behavior of the slowly frozen/thawed flocs.

Journal Article↗
PubMed1994

Dental pain evoked by hydrostatic pressures applied to exposed dentin in man: a test of the hydrodynamic theory of dentin sensitivity.

The hydrodynamic theory of dentin sensitivity holds that pain is evoked by stimuli producing minute shifts in tubule fluid. In human volunteers hydrostatic pressures were applied to prepared dentinal cavities. The subjects reported the magnitude and quality of their sensations of pain by means of an intermodal matching technique in combination with verbal descriptors. No pain could be elicited when the smear layer was present. After removal of this layer, pressure stimuli of either direction evoked sharp pain. Rapid changes in pressure induced higher pain intensities than slow changes, indicating that the dental A-delta system is dynamic and gradient dependent. These results provide support for the hydrodynamic theory of dentin sensitivity and also lend credence to the notion that the movement of fluid across dentin induces a selective activation of the A-delta nerves in healthy pulps which is highly correlated with a sensation of sharp and/or shooting pain.

Acid Etching, Dental↗
PubMed2000

Dot assay for determining adhesive interactions between yeasts and bacteria under controlled hydrodynamic conditions.

Candida belongs to the normal human microflora and are found adhering to a number of human body tissues as well as to a variety of biomaterials implants. Often, yeasts adhere in association with bacteria, but to date there is no definitive assay to investigate adhesive interactions between yeasts and bacteria adhering on surfaces. Although we recently described the use of a parallel plate flow chamber to this purpose [Millsap, K.W., Bos, R., Van der Mei, H. C., Busscher, H.J., 1998. Adhesive interactions between medically important yeasts and bacteria. FEMS Microbiol. Rev. 21, 321-336], the method was slow and evaluation of a large number of strains showed major biological variation between experiments. Here, we describe a new assay for the simultaneous determination of the adhesive interactions between yeasts and different bacterial strains on a surface under controlled hydrodynamic conditions. On an acrylic surface, the presence of adhering bacteria suppressed adhesion of Candida albicans ATCC 10261 to various degrees, depending on the bacterial strain involved. Suppression of C. albicans ATCC 10261 adhesion was strongest by Actinomyces naeslundii T14V-J1, while adhering Streptococcus gordonii NCTC 7869 caused the weakest suppression of yeast adhesion. When adhering yeasts and bacteria were challenged with the high detachment force of a passing liquid-air interface, the majority of the yeasts detached, while C. albicans adhering on the control, bare polymethylmethacrylate surface formed aggregates. Summarizing, this study presents a new method to determine suggested adhesive interactions between yeasts and adhering bacteria under controlled hydrodynamic conditions. However, the results seem to indicate that these adhesive interactions may well not exist, but that instead different bacterial strains have varying abilities to discourage yeast adhesion.

Actinomyces↗
PubMed1994

Hydrodynamic evaluation of intravenous infusion systems.

STUDY OBJECTIVE: We investigated the hydrodynamic characteristics of IV infusion sets for rapid fluid resuscitation. A simple technique has been devised for quantitative evaluation of the hydrodynamic characteristics of IV sets, including their components, for a range of infusion pressures. SETTING AND METHODS: Previous investigations have measured the overall flow rate of infusion sets with and without IV catheters. This study presents a quantitative technique for measuring the resistance to flow of the IV delivery set as a whole as well as its components. An infusion set was measured with 14- and 18-gauge IV catheters while delivering fluid at infusion pressures between 50 (gravity) and 400 mm Hg. MEASUREMENTS AND MAIN RESULTS: At gravity-driven infusion, the drip chamber imposes a resistance to flow of the same order as that of the catheter. At pressurized infusion with small-bore catheters, the catheter consumes the majority of the overall pressure drop. At pressurized infusion with a large-bore catheter or tubing, the standard drip chamber becomes the limiting component and imposes the largest resistance to flow. CONCLUSION: At gravity-delivered pressures (50 and 100 mm Hg), the only effective way of increasing flow rate (more than twofold) is to use a low-resistance drip chamber or to use two infusion sites. At pressurized delivery pressures (more than 200 mm Hg), increasing catheter size from 18 to 14 gauge would be more effective than doubling the number of infusion sets. Also, a more efficient drip chamber adds an important advantage. Finally, increasing the tubing diameter adds only minimal benefit.

Catheterization, Peripheral↗
PubMed2002

[Hydrodynamic and biochemical effects of hypothermic perfusion of isolated kidney according to the type of pump].

OBJECTIVE: To study on isolated kidney perfusions by means of a self-designed computer-controlled organ perfusion system the hydrodynamic and biochemical effects of two types of pumps: a self-designed vacuum powered tubular pump and a classical roller pump. BASIC PROCEDURES: Experimental study performed on 12 right mini-pig kidneys. After transperitoneal bilateral nephrectomy, organs are perfused with Eurocollins solution in a randomised manner with one type of pump. The system records continuously perfusion pressure, flow and renal resistance. RESULTS: Medium renal vascular resistance was significantly lower in vacuum powered tubular pump perfusions. LDH level in the solution showed correlation with perfusion flow. CONCLUSIONS: Vacuum powered tubular pump increases renal flow and lowers renal vascular resistance significantly in comparison to roller pump. LDH level in the solution is related to good-quality hydrodynamic perfusion parameter values.

Animals↗
PubMedDate not supplied

[Hydrodynamic and biochemical adaptation to perfusion pressure profile in isolated hypothermic renal perfusion].

OBJECTIVES: To evaluate hydrodynamic, biochemical and pathologic consequences of positive forced pressure on hypothermic isolated renal perfusions in comparison to softly progressive administration of perfusion solution. MATERIAL AND METHOD: 16 hypothermic experimental pig renal perfusion o 180 min completed under constant flow conditions. A vacuum computer-controlled pump was used. A comparison was performed of the results obtained by two groups of organs (forced perfusion pressure -I.B.- and soft perfusion pressure -I.S.). RESULTS: Even though perfusion flor did not offer significant differences among both groups at the end of the procedure, I.B. group showed medium perfusion pressure and renal vascular resistance values significantly higher. Nitric oxide metabolites concentration was also greater in I.B. group. Finally, these kidneys showed more tubular cell aedema and glomerular shrinkage in comparison to I.S. group. CONCLUSIONS: Sharp and forced hypothermic perfusion of the isolated kidney don't increase flow perfusion values. Inversely, hydrodynamic and pathologic results are worst in comparison to soft and progressive organ perfusion.

Adaptation, Physiological↗
PubMed2000

Determination of hydrodynamic drag forces and drag coefficients on human leg/foot model during knee exercise.

OBJECTIVE: The purpose of this laboratory experiment was to measure hydrodynamic drag forces in barefoot/hydro-boot conditions and accordingly, to determine the coefficients of drag on human leg/foot model during simulated knee extension-flexion exercise. DESIGN: The prosthesis of the human lower leg was set in a water tank and connected into an isokinetic force dynamometer to measure resistive forces during knee motion. BACKGROUND: Quantifying resistance for aquatic exercises has been a challenge in hydrotherapy. The use of models of foot/leg provides a practical method to calculate coefficients of drag and to estimate resistance for rehabilitation purposes in musculoskeletal and amputee patients. METHODS: The dynamometer produced constant angular velocities of 250 degrees /s, 270 degrees /s and 300 degrees /s to the prosthesis. The baseline for measurements was performed in barefoot condition. A hydro-boot was used to study effects of increased frontal area (30%) of the leg on drag forces and coefficients. RESULTS: The maximal drag force values were 61 N (300 degrees /s) in barefoot and 270 N (270 degrees /s) in hydro-boot condition. Related drag coefficient values during the range of motion were from 0.3 to 0.1 and from 1 to 0.8, respectively. CONCLUSIONS: Drag force and related drag coefficient were highest during the early part of extension (150-140 degrees flexion) as the model was opposing the lift forces with the influence of water resistance. The effect of velocity was remarkable on drag forces but minimal on drag coefficient values. RelevanceThe drag forces and coefficients of this experiment can be clinically utilised to calculate hydrodynamic forces to develop progressive knee exercise programs as well as to design of prosthesis for amputee patients.

Biomechanical Phenomena↗
PubMed2001

Building hydrodynamic bead-shell models for rigid bioparticles of arbitrary shape.

The calculation of hydrodynamic and other solution properties of rigid macromolecules, using bead-shell model methodologies, requires the specification of the macromolecular shape in a format that can be interfaced with existing programs for hydrodynamic computations. Here, a procedure is presented for such a structural specification that is applicable to arbitrarily shaped particles. A computer program (MAKEPIXB), in which the user inserts the code needed to determine the structure, produces an structural file that is interpreted by another program (HYDROPIX) which is in charge of the computation of properties. As simple and yet illustrative examples we consider two cases: (1) dimeric structures composed of ellipsoidal subunits; and (2) toroidal structures, presenting simple equations that predict the properties of toroids with varying radial ratios.

Biopolymers↗