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PubMed1998

Developing sustainable systems for nematode management.

Early researchers identified key concepts and developed tactics for multiple-option management of nematodes. Although the emphasis on integrated pest management over the past three decades has promoted strategies and tactics for nematode management, comprehensive studies on the related soil biology-ecology are relatively recent. Traditional management tactics include host resistance (where available), cultural tactics such as rotation with nonhosts, sanitation and avoidance, and destruction of residual crop roots, and the judicious use of nematicides. There have been advances in biological control of nematodes, but field-scale exploitation of this tactic remains to be realized. New technologies and resources are currently becoming central to the development of sustainable systems for nematode-pest-crop management: molecular diagnostics for nematode identification, genetic engineering for host resistance, and the elucidation and application of soil biology for general integrated cropping systems. The latter strategy includes the use of nematode-pest antagonistic cover crops, animal wastes, and limited tillage practices that favor growth-promoting rhizobacteria, earthworms, predatory mites, and other beneficial organisms while suppressing parasitic nematodes and other plant pathogens. Certain rhizobacteria may induce systemic host resistance to nematodes and, in some instances, to foliage pathogens. The systems focusing on soil biology hold great promise for sustainable crop-nematode management, but only a few research programs are currently involved in this labor-intensive endeavor.

Journal Article↗
PubMed1996

Excess nutrients in hydroponic solutions alter nutrient content of rice, wheat, and potato.

Environment has significant effects on the nutrient content of field-grown crop plants. Little is known, however, about compositional changes caused by controlled environments in which plants receive only artificial radiation and soilless, hydroponic culture. This knowledge is essential for developing a safe, nutritious diet in a Controlled Ecological Life-Support System (CELSS). Three crops that are candidates for inclusion in a CELSS (rice, wheat, and white potato) were grown both in the field and in controlled environments where the hydroponic nutrient solution, photosynthetic photon flux (PPF), and CO2 level were manipulated to achieve rapid growth rates. Plants were harvested at maturity, separated into discrete parts, and dried prior to analysis. Plant materials were analyzed for proximate composition (protein, fat, ash, and carbohydrate), total nitrogen (N), nitrate, minerals, and amino-acid composition. The effect of environment on nutrient content varied by crop and plant part. Total N and nonprotein N (NPN) contents of plant biomass generally increased under controlled-environment conditions compared to field conditions, especially for leafy plant parts and roots. Nitrate levels were increased in hydroponically-grown vegetative tissues, but nitrate was excluded from grains and tubers. Mineral content changes in plant tissue included increased phosphorus and decreased levels of certain micronutrient elements under controlled-environment conditions. These findings suggest that cultivar selection, genetic manipulation, and environmental control could be important to obtain highly nutritious biomass in a CELSS.

Amino Acids↗
PubMed2002

Polyhydroxyalkanoate polymers and their production in transgenic plants.

Commercialization of plant-derived polyhydroxyalkanoates will require the creation of transgenic crop plants that possess high product yields, normal plant phenotypes, and transgenes that are stable over several generations. The studies included in this review describe the progress that has been made toward achieving these goals in both model plant systems and commercial crop plants.

Arabidopsis↗
PubMed2026

Soil management practices shape the abundance, diversity, and spread of antimicrobial resistance.

Agricultural soils are critical hotspots of antimicrobial resistance genes (ARGs). Yet, the environmental factors shaping these reservoirs and the hazards they pose to humans and livestock remain poorly understood. Because management practices introduce antibiotics, heavy metals, and nonantibiotic biocides, they can rapidly select for resistance. Most studies have examined components of management practices in isolation, overlooking the multiple stressors of modern industrial agriculture. Here, we used a large-scale field experiment to examine how multiple stressors from soil and crop management interact to shape antimicrobial resistance. We combined shotgun metagenomics, phylogenomics, and risk-score analyses to quantify the diversity of ARGs, mobile genetic elements (MGEs), and the transmission potential of drug-resistant pathogens. Relative to other management systems, intensive, chemically reliant monoculture systems, typical of the US Corn Belt, create strong selective pressures promoting more abundant and diverse ARGs and MGEs. These systems therefore carry greater potential to transmit ARGs, including those with relevance to both livestock and public health such as tetA and blaPAM, likely mediated by integration and excision. In contrast, less-intensive, lower-input systems with diverse crop rotations maintained resistomes with lower abundance, diversity, and transmission potential. Our results suggest that these patterns could arise due to the divergent effects of management practices on overall soil microbial diversity, an ecological barrier that can suppress ARGs. This study highlights the need to understand the combined stressors of agricultural practices, beyond antimicrobial use, to design effective strategies to mitigate antimicrobial resistance.

Soil Microbiology↗
PubMed2000

Rice at the forefront of plant genome informatics.

As rice genomicsdata continue to accumulate at a rapid rate, are becoming more valuable to warehouse and access large and rigorous data sets. This article gives an overview of available resources on rice bioinformatics and their role in elucidating and propagating biological and genomic information in rice. Of particular focus here is the informatics infrastructure developed at the Rice Genome Research Program (RGP) following an extensive rice genome analysis. The database named INE (Integrated Rice Genome Explorer) integrates the genetic and physical mapping information with the genome sequence being generated in collaboration with the International Rice Genome Sequencing Project (IRGSP). Database links are initially evaluated using an interoperable query tool to explore and compare data across the rice and maize genome databases and potential application to multiple crop database querying. A proposed logistics for interlinking these resources is presented to integrate, manipulate and analyze information on the rice genome. One of the biggest challenges of rice bioinformatics lies in the emerging role of rice as a model system among grass crop species. In view of the importance of comparative genetics in the formulation of new knowledge on plant genomes and genes, comparative bioinformatics remains an essential strategy to gain new insights on the needs and expectations on rice genomics.

Chromosome Mapping↗
PubMed2005

Variation in antibiosis ability, against potato pathogens, of bacterial communities recovered from the endo- and exoroots of potato crops produced under conventional versus minimum tillage systems.

The culturable component of bacterial communities found in the endoroot and associated exoroot (root zone soil) was examined in potatoes (Solanum tuberosum L.) grown under either conventional or minimum tillage systems. Bacterial species--abundance relationships were determined and in vitro antibiosis ability investigated to discover whether tillage practice or bacteria source (endo- or exoroot) influenced bacterial community structure and functional versatility. Antibiosis abilities against Phytophthora erythroseptica Pethyb. (causal agent of pink rot of potatoes), Streptomyces scabies (Thaxt.) Waksm. and Henrici) (causal agent of potato common scab), and Fusarium oxysporum Schlecht. Emend. Snyder and Hansen (causal agent of fusarium potato wilt) were selected as indicators of functional versatility. Bacterial community species richness and diversity indices were significantly greater (P = 0.001) in the exoroot than in the endoroot. While both endo- and exoroot communities possessed antibiosis ability against the phytopathogens tested, a significantly greater proportion (P = 0.0001) of the endoroot population demonstrated antibiosis ability than its exoroot counterpart against P. erythroseptica and F. oxysporum. Tillage regime had no significant influence on species-abundance relationships in the endo- or exoroot but did influence the relative antibiosis ability of bacteria in in vitro challenges against S. scabies, where bacteria sourced from minimum tillage systems were more likely to have antibiosis ability (P = 0.0151). We postulate that the difference in the frequency of isolates with antibiosis ability among endoroot versus exoroot populations points to the adaptation of endophytic bacterial communities that favour plant host defence against pathogens that attack the host systemically.

Agriculture↗
PubMedDate not supplied

Preferential bromide and pesticide movement to tile drains under different cropping practices.

Subsurface drainage systems are useful tools to study chemical leaching in soils. Our objective was to compare the breakthrough behavior of bromide, atrazine (2-chloro-4-ethylamino-6-isopropylamino-s-triazine) and metolachlor [2-chloro-N-(2-ethyl-6-methylphenyl)-N-(2-methoxy-1-methylethyl) acetamid] to tile drains under two fall tillage practices (conventional tillage [CT] with a moldboard plow, and reduced tillage [RT] with a chisel plow) in field plots cultivated with corn (Zea mays L.). Leachate volume were greater in RT than in CT, with no statistical differences. Soil analysis showed that bromide migrated deeper in the soil profile than both herbicides, with little tillage effect. All chemicals were detected in drainage water at the same time and followed an event-driven behavior. Tillage had no effect on atrazine and metolachlor found in drainage water, while bromide concentration peaks were higher in RT than in CT in 1999. Concentration peaks were recorded earlier for atrazine and metolachlor than for bromide. Plots of cumulative relative chemical mass (cumulative mass divided by total mass measured in drainage) as a function of cumulative drainage were mostly linear for bromide, while they were S-shaped for both herbicides. Drainage that corresponded to 50% of relative cumulative mass ranged from 40 to 55% for bromide and from 5 to 28% for both herbicides. Rapid chemical movement to tile drains suggested that preferential flow was important in both CT and RT, and that these tillage practices had little influence on this phenomena.

Acetamides↗
PubMed1997

A total system approach to sustainable pest management.

A fundamental shift to a total system approach for crop protection is urgently needed to resolve escalating economic and environmental consequences of combating agricultural pests. Pest management strategies have long been dominated by quests for "silver bullet" products to control pest outbreaks. However, managing undesired variables in ecosystems is similar to that for other systems, including the human body and social orders. Experience in these fields substantiates the fact that therapeutic interventions into any system are effective only for short term relief because these externalities are soon "neutralized" by countermoves within the system. Long term resolutions can be achieved only by restructuring and managing these systems in ways that maximize the array of "built-in" preventive strengths, with therapeutic tactics serving strictly as backups to these natural regulators. To date, we have failed to incorporate this basic principle into the mainstream of pest management science and continue to regress into a foot race with nature. In this report, we establish why a total system approach is essential as the guiding premise of pest management and provide arguments as to how earlier attempts for change and current mainstream initiatives generally fail to follow this principle. We then draw on emerging knowledge about multitrophic level interactions and other specific findings about management of ecosystems to propose a pivotal redirection of pest management strategies that would honor this principle and, thus, be sustainable. Finally, we discuss the potential immense benefits of such a central shift in pest management philosophy.

Animals↗
PubMed2001

INSIGHT: a framework for determining impacts of changes in land and water policies.

CSIRO Sustainable Ecosystems is constructing a spatially explicit modelling system capable of exploring alternative land and water policy alternatives against plausible price, cost, and climate scenarios for the next 20 years. INSIGHT will be used to identify the likely impacts of land and water policy options on regional economies and structural adjustment. Flowcharts have been constructed for most of the major crop and pasture and associated economic models for commodities produced in the Lachlan River Catchment of New South Wales. This enabled the most important components and interrelationships within these models to be readily identified. The next step has been to construct models at the regional scale that contain the essential elements of the more-detailed point models. The paper describes the progress to date in describing these models, and how they have been integrated into a coordinated agricultural crop production evaluation system.

Agriculture↗
PubMed1999

Coupling machine vision and crop models for closed-loop plant production in advanced life support systems.

We present a conceptual framework for coupling nondestructive sensing to crop models for closed-loop plant production for NASA's program in advanced life support. Coupling is achieved by comparing nondestructive observations with model predictions of plant growth and development. The information thus provided may be useful in diagnosing problems with the plant growth system, or as a feedback to the model for evaluation of plant scheduling and potential yield. We illustrate this concept using canopy height and machine vision measured top projected canopy area (TPCA), and the CROPGRO crop growth model. Model simulations of soybean TPCA and canopy height were evaluated against data for hydroponic soybean grown under two separate light/dark cycle temperature regimes (23/19 degrees C and 26/22 degrees C). Our results suggest that TPCA and canopy height are potentially useful variables for closed-loop plant production in controlled environments during the first few weeks of growth, before canopy closure.

Biomass↗
PubMed1997

Storage stability of screwpress-extracted oils and residual meals from CELSS candidate oilseed crops.

The efficacy of using screwpress extraction for oil was studied with three Controlled Ecological Life-Support System (CELSS) candidate oilseed crops (soybean, peanut, and canola), since use of volatile organic solvents for oil extraction likely would be impractical in a closed system. Low oil yields from initial work indicated that a modification of the process is necessary to increase extraction efficiency. The extracted oil from each crop was tested for stability and sensory characteristics. When stored at 23 degrees C, canola oil and meal were least stable to oxidative rancidity, whereas peanut oil and meal were least stable to hydrolytic rancidity. When stored at 65 degrees C, soybean oil and canola meal were least stable to oxidative rancidity, whereas peanut oil and meal were least stable to hydrolytic rancidity. Sensory evaluation of the extracted oils used in bread and salad dressing indicated that flavor, odor intensity, acceptability, and overall preference may be of concern for screwpress-extracted canola oil when it is used in an unrefined form. Overall results with screwpress-extracted crude oils indicated that soybean oil may be more stable and acceptable than canola or peanut under typical storage conditions.

Arachis↗
PubMed1996

Nitrogen dynamics in the CELSS Breadboard facility at Kennedy Space Center.

For the past 9 years, the Breadboard Project at Kennedy Space Center has studied the feasibility of using crop plants in bioregenerative life support systems for long-duration space missions. Nitrogen (N) has been emphasized in nutrient balance studies because it is a major plant nutrient, undergoes biogenic and abiogenic transformations, and is often limiting to plant growth under field conditions. Nitrogen budgets have been calculated from experimental results to quantify utilization and losses associated with specific crop production systems. The Breadboard Project has recently completed a 418-day potato crop study using recycled nutrient solution to evaluate the impact of continuous production on life support functions. A continuous production system is desirable in maintaining N balance within a solution because crop uptake rates vary dramatically depending upon the stage of crop development. Strategies for recycling N using biological techniques (e.g., biomass degradation with microbial bioreactors) have required that the production system be modified to distribute inputs more evenly over time. Recovery of N is dependent on the form of N entering the bioreactor and the desired output. Aerobic and anaerobic bioreactors for the recovery of N from waste streams and its transformation into a form usable by higher plants are being designed and tested.

Aerobiosis↗
PubMed2006

Development of environmentally superior treatment system to replace anaerobic swine lagoons in the USA.

A full-scale treatment system for swine manure was developed to eliminate discharge to surface and ground waters and contamination of soil and groundwater by nutrients and heavy metals, along with related release of ammonia, odor, and pathogens. The system greatly increased the efficiency of liquid-solid separation by polymer injection to increase solids flocculation. Nitrogen management to reduce ammonia emissions was accomplished by passing the liquid through a module where bacteria transformed ammonia into harmless nitrogen gas. Subsequent alkaline treatment of the wastewater in a phosphorus module precipitated phosphorus and killed pathogens. Treated wastewater was recycled to clean swine houses and for crop irrigation. The system was tested during one year in a 4400-head finishing farm as part of the Agreement between the Attorney General of North Carolina and swine producers Smithfield Foods, Premium Standard Farms and Frontline Farmers to replace traditional waste treatment anaerobic lagoons with environmentally superior technology. The on-farm system removed 97.6% of the suspended solids, 99.7% of BOD, 98.5% of TKN, 98.7% of soluble ammonia (NH(4)(+)-N), 95.0% of total P, 98.7% of copper and 99.0% of zinc. It also removed 97.9% of odor compounds in the liquid and reduced pathogen indicators to non-detectable levels. Based on performance obtained, it was determined that the treatment system met the Agreement's technical performance standards that define an environmentally superior technology. These findings overall showed that cleaner alternative technologies are technically and operationally feasible and that they can have significant positive impacts on the environment and the livestock industry.

Agriculture↗
PubMed2002

Evaluating an interpolation approach for modelling spatial variability in pest development.

Air temperatures estimated by partial thin plate spline interpolation, or from the 'nearest station' (Voronoi polygon method), were used to model the phenology of three pests of horticultural crops throughout England and Wales. Temperatures for a particularly hot (1976) and a particularly cold (1986) year were interpolated to a grid resolution of 1 km. Estimates were made of the timing of spring emergence (Cecidophyopsis ribis (Westwood)), the maximum number of generations completed during the summer (Plutella xylostella (Linnaeus)) and the numbers of days when mating was possible (Merodon equestris (Fabricius)). The relative accuracy of the two temperature estimation methods was compared using jack-knife cross-validation. For C. ribis and P. xylostella, modelling with interpolated temperature input data was more accurate than using data from the 'nearest station'. Of the three phenology models used, the one that relied on an activity threshold (M. equestris) was the most sensitive to both types of input data. Spatial variability in the activity of M. equestrisadults was investigated in the two main areas (south-west peninsula and Lincolnshire) where its host crop (Narcissus) is grown. Modelling at cruder scales (up to 25*25 km) masked local variation, but the degree to which this was important varied from region to region and over time, as did the geography of the variability itself. The results indicate that interpolated data, computed to a resolution of 1 km using the UK synoptic network, have the potential for wider use within agricultural decision support systems for horticultural crops.

Animals↗
PubMed2003

Hydroponic chrysanthemum production: cultural and pathological issues.

Hydroponic culture has not replaced soil culture in greenhouse production of chrysanthemum (commonly known as 'mum'). This study examines cultural or pathological conditions that might have affected the conversion from soil to hydroponic production. Cultural factors investigated included hydroponic container size and shape and oxygenation of the nutrient solution. Disorders encountered during the studies included salt wicking during rooting of the cuttings and severe Pythium infection in the third and successive crops in a hydroponic system. Mums did not appear to respond to various shapes and sizes of containers and troughs in which they were grown. Also, increased oxygenation had little effect on pythium root rot and plant growth. Rooting of cuttings in a polyethylene covered hydroponic system reduced wilting, whereas salt wicking was severe without a plastic covering. Pythium disease was severe in the third and successive crops in the same hydroponic system. The disease could be overcome by raising the cuttings in a peat-based growing medium in perforated plastic cells and then transplanting the seedlings along with the peat moss cubes into a hydroponic system.

Chrysanthemum↗
PubMedDate not supplied

Effect of manure application timing, crop, and soil type on phosphorus leaching.

Phosphorus (P) leaching losses from manure applications may be of concern when artificial drainage systems allow for hydrologic short-cuts to surface waters. This study quantified P leaching losses from liquid manure applications on two soil textural extremes, a clay loam and loamy sand soil, as affected by cropping system and timing of application. For each soil type, manure was applied at an annual rate of 93 800 L ha(-1) on replicated drained plots under maize (Zea mays L.) in early fall, late fall, early spring, and as a split application in early and late spring. Manure was applied on orchardgrass (Dactylis glomerata L.) in split applications in early fall and late spring, and early and late spring. Drain water was sampled at least weekly when lines were flowing, and outflow rate and total P content were determined. High P leaching losses were measured in the clay loam as soon as drain lines initiated flow after manure application. Flow-weighted mean P leaching losses on clay loam plots averaged 39 times higher (0.504 mg L(-1)) than those on loamy sand plots (0.013 mg L(-1)), and were above the USEPA level of concern of 0.1 mg L(-1). Phosphorus losses varied among application seasons on the clay loam soil, with highest losses generally measured for early fall applications. Phosphorus leaching patterns in clay loam showed short-term spikes and high losses were associated with high drain outflow rates, suggesting preferential flow as the main transport mechanism. Phosphorus leaching from manure applications on loamy sand soils does not pose environmental concerns as long as soil P levels remain below the saturation level.

Agriculture↗
PubMed2006

Assessing alternatives for mitigating net greenhouse gas emissions and increasing yields from rice production in China over the next twenty years.

Assessments of the efficacy of mitigation of greenhouse gas (GHG) emissions from paddy rice systems have typically been analyzed based on field studies. Extrapolation of the mitigation potential of alternative management practices from field studies to a national scale may be enhanced by spatially explicit process models, like the DeNitrification and DeComposition (DNDC) model. Our objective was to analyze the impacts of mitigation alternatives, management of water, fertilizer, and rice straw, on net GHG emissions (carbon dioxide, methane, and nitrous oxide fluxes), yields, and water use. After constructing a GIS database of soil, climate, rice cropping area and systems, and management practices, we ran DNDC with 21-yr alternative management schemes for each of the approximately 2500 counties in China. Results indicate that, despite large-scale adoption of midseason drainage, there is still large potential for additional methane reductions from Chinese rice paddies of 20 to 60% over 2000-2020. However, changes in management for reducing CH4 emissions simultaneously affect soil carbon dynamics as well as N2O emissions and can thereby reorder the ranking of technical mitigation effectiveness. The order of net GHG emissions reduction effectiveness found here is upland rice > shallow flooding > ammonium sulfate > midseason drainage > off-season straw > slow-release fertilizer > continuous flooding. Most of the management alternatives produced yields comparable to the baseline; however, continuous flooding and upland rice significantly reduced yields. Water management strategies appear to be the most technically promising GHG mitigation alternatives, with shallow flooding providing additional benefits of both water conservation and increased yields.

Air Pollutants↗
PubMed1980

[Nitrates of agricultural origin: their accumulation in plants and their effect on the environment].

When dealing with the environmental impacts of nitrate nitrogen, one must, first, underline the main place of nitrogen in the dietary needs of man. This element is simultaneously one of the main factors of crop yields, and the first step in the elaboration of proteins. The accumulation of nitrates in crops is defined, its draw-backs are briefly reminded. Nitrate content differs between the organs: stems, petioles, young roots are richer than limbs of leaves; fruits are very poor. The factors of nitrate accumulation are reminded: the nitrogen availability in soil, the light, the other nutrients, and the plant characteristics (e.g., age, cultivar). Ways to obtain a better control of nitrate content in edible parts of spinach, carrot and tomato are discussed. Then, the nitrogen cycle in the soil is briefly described. The influence of various agricultural systems (pastures, annual cropping, wheat, corn, soja) on the nitrate content of groundwater is shown.

Agriculture↗