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PubMed2000

Impacts of the Detection of Cassiopeia A Point Source.

Very recently the Chandra first light observation discovered a point-like source in the Cassiopeia A supernova remnant. This detection was subsequently confirmed by the analyses of the archival data from both ROSAT and Einstein observations. Here we compare the results from these observations with the scenarios involving both black holes (BHs) and neutron stars (NSs). If this point source is a BH, we offer as a promising model a disk-corona type model with a low accretion rate in which a soft photon source at approximately 0.1 keV is Comptonized by higher energy electrons in the corona. If it is an NS, the dominant radiation observed by Chandra most likely originates from smaller, hotter regions of the stellar surface, but we argue that it is still worthwhile to compare the cooler component from the rest of the surface with cooling theories. We emphasize that the detection of this point source itself should potentially provide enormous impacts on the theories of supernova explosion, progenitor scenario, compact remnant formation, accretion to compact objects, and NS thermal evolution.

Journal Article↗
PubMed1994

Morphological study of the rostral interstitial nucleus of the medial longitudinal fasciculus in the monkey, Macaca mulatta, by Nissl, Golgi, and computer reconstruction and rotation methods.

We have studied the morphology of silver-impregnated neurons (rapid Golgi technique) in the rostral interstitial nucleus of the medial longitudinal fasciculus (riMLF), a center involved in the control of vertical and torsional saccadic eye movements. This morphological study of riMLF neurons in the rhesus monkey was undertaken to further our understanding of the functional circuitry of the oculomotor system. Our study employed Nissl, Golgi, and computer-assisted methods. The cytoarchitectonic boundaries of the riMLF and its relationships to neighboring structures were determined in both Nissl and Golgi preparations. Five (I-V) distinct morphological types of riMLF neurons were distinguished in the Golgi impregnations on the basis of soma size, dendritic size, numbers of primary dendrites, number of dendritic branch points, as well as form, number, and distribution of dendritic appendages. Type I neurons impregnated most frequently and had the most extensive and highly branched dendritic tree. Type II neurons displayed thick dendrites with complex dendritic appendages, but the dendritic tree was much more compact than that of type I cells. Type III and type V cells had fusiform somas and relatively unbranched dendritic trees but differed greatly in size as well as dendritic morphology. The type IV cell was the smallest neuron and had many characteristics of the local interneurons found in other thalamic, subthalamic, hypothalamic and midbrain centers. The type V was the largest neuron, least frequently impregnated, and found only at rostral riMLF levels. Digitized reconstructions of each type of neuron were rotated by the computer, which revealed that the dendritic trees of types I, III, and V occupy a disk-like compartment in the riMLF neuropil. In contrast, the tree of types II and IV occupy a roughly spherical compartment. We suggest that three of the cell types are well suited for specific purposes: type II cells for receiving topographically organized inputs that contain spatial information, type I cells for short-lead burst neuron output to the motor neurons or other premotor centers, and type IV cells for inhibitory inputs to type I cells.

Animals↗
PubMed1982

Septate junctions in imaginal disks of Drosophila: a model for the redistribution of septa during cell rearrangement.

The organization of septate junctions during morphogenesis of imaginal disks is described from freeze-fracture replicas and thin sections with a view to understanding junction modulation during rearrangements of cells in epithelia. The septate junctions of each epithelial cell of the disk are distributed in a number of discrete domains equal to the number of neighboring cells. Individual septa traverse domains of contact between pairs of adjacent cells, turn downwards at the lateral boundary of the domain and run parallel to the intersection with a third cell. This arrangement leaves small channels at three-cell intersections that are occupied by specialized structures termed "tricellular plugs." Cell rearrangement involves a progressive change in the width of contact domains between adjacent cells, until old contacts are broken and new ones established. It is proposed that the septate junction adjusts to the changing width of domains by the compaction or extension of existing septa. This redistribution of septa theoretically allows a transepithelial barrier to be maintained during cell rearrangements. The applicability of this model to other epithelial tissues is discussed.

Animals↗
PubMed1994

The Portable Dictionary of the Mouse Genome: a personal database for gene mapping and molecular biology.

The Portable Dictionary of the Mouse Genome is a database for personal computers that contains information on approximately 10,000 loci in the mouse, along with data on homologs in several other mammalian species, including human, rat, cat, cow, and pig. Key features of the dictionary are its compact size, its network independence, and the ability to convert the entire dictionary to a wide variety of common application programs. Another significant feature is the integration of DNA sequence accession data. Loci in the dictionary can be rapidly resorted by chromosomal position, by type, by human homology, or by gene effect. The dictionary provides an accessible, easily manipulated set of data that has many uses--from a quick review of loci and gene nomenclature to the design of experiments and analysis of results. The Portable Dictionary is available in several formats suitable for conversion to different programs and computer systems. It can be obtained on disk or from Internet Gopher servers (mickey.utmen.edu or anat4.utmen.edu), an anonymous FTP site (nb.utmem.edu in the directory pub/genedict), and a World Wide Web server (http://mickey.utmem.edu/front.html).

Animals↗
PubMed2000

Effect of biomass concentration and mycelial morphology on fermentation broth rheology.

The effect of biomass concentration and mycelial morphology on fungal fermentation broth rheological properties has been investigated. In previous work it had been shown that commonly used rheological parameters, such as the power law consistency and flow behavior indices, could be correlated successfully with the broth biomass concentration and clump morphological parameters of roughness and compactness. More recent work on a broader range of data showed a correlation between roughness and compactness; consequently, it was not correct to use both of these morphological variables simultaneously in rheological parameter correlations. Furthermore, earlier correlations were only made using clump morphological parameters, as clumps were found to be around 90% of the biomass in batch fermentations. In the present work it was found that the percentage of clumps fell to around 30% to 40% of a sample during the later stages of fed-batch fermentations. No clear relationship between the flow behavior index and biomass concentration was found, at least for those phases of the fermentation in which the viscosities were high enough for the rheology to be characterized by a disk turbine rheometer. The mean value of the flow behavior index was found to be 0.35 +/- 0.1 (standard deviation) throughout both batch and fed-batch fermentations, although some significant deviations from this value were observed early and very late in the fermentations. Correlations for the consistency index, measured using a disk turbine rheometer, were based on the biomass concentration and the mycelial size (represented by the mean projected area or the mean maximum dimension of all the mycelia). These correlations were reasonably successful for both fed-batch and batch fermentations. The correlation using the mean maximum dimension was preferred to that using the mean projected area, as the former is independent of magnification. The proposed correlation is: where K is the consistency index (Pa. s(n>)), C(m) is the biomass concentration as dry cell weight (g L(-1)), and D is the mean maximum dimension (microm). It should be noted that small changes in the exponent on the biomass concentration (alpha) may dramatically affect any predictions. Consequently, caution in the use of this correlation (and that based on mean projected area) is advocated, although its accuracy may be suitable for operational or design purposes.

Biomass↗
PubMed2003

Investigation of the obscuring circumnuclear torus in the active galaxy Mrk231.

Active galaxies are characterized by prominent emission from their nuclei. In the 'unified' view of active galaxies, the accretion of material onto a massive compact object--now generally believed to be a black hole--provides the fundamental power source. Obscuring material along the line of sight can account for the observed differences in the nuclear emission, which determine the classification of AGN (for example, as Seyfert 1 or Seyfert 2 galaxies). Although the physical processes of accretion have been confirmed observationally, the structure and extent of the obscuring material have not been determined. Here we report observations of powerful hydroxyl (OH) line emissions that trace this obscuring material within the circumnuclear environment of the galaxy Markarian 231. The hydroxyl (mega)-maser emission shows the characteristics of a rotating, dusty, molecular torus (or thick disk) located between 30 and 100 pc from the central engine. We now have a clear view of the physical conditions, the kinematics and the spatial structure of this material on intermediate size scales, confirming the main tenets of unification models.

Journal Article↗
PubMed2003

12-fs pulses from a continuous-wave-pumped 200-nJ Ti:sapphire amplifier at a variable repetition rate as high as 4 MHz.

We demonstrate a novel compact femtosecond Ti:sapphire laser system operating at repetition rates from 10 kHz to 4 MHz. The scheme is based on the combination of a broadband cavity-dumped oscillator and a double-pass Ti:sapphire amplifier pumped by a low-noise cw solid-state laser. Amplified pulses with an extremely smooth spectrum, a duration of only 12 fs, and less than 0.25% rms fluctuation are generated in a beam with M2 < 1.2. A maximum pulse energy of 210 nJ and an average output power of as much as 720 mW are achieved. This output energy is sufficient to generate a stable continuum in a sapphire disk.

Journal Article↗
PubMed1993

The study of relationships between the damage of visual function and hemorrheology, ocular rheography, as well as other related factors in patients with primary open angle glaucoma (POAG).

Researches of glaucoma visual function damage, hemorheology, ocular rheography and other related multiplex factors, with computed multifactorial stepwise regression analysis, indicate that the elevation of intraocular pressure (IOP) is not the only factor to induce visual impairment. POAG patients are shown to have markedly reduced diastolic perfusion pressure in ophthalmic artery, besides prolonged filling time of the retinal artery and vein, diminished erythrocyte deformability and increased platelet adhesion rate. The characteristic of ocular rheographic changes in POAG patients of controlled IOP suggest that the abnormal changes of hemorheology be responsible for the damage of visual function. The abnormal changes of plasma viscosity, blood apparent viscosity, blood viscoelasticity, hematocrit, mean red cell volume etc could be found in addition to the reduction of PO2, SO2% and trace elements (Cr, Zn, Mg, Fe) in patients with POAG. Computed multiply stepwise regression analysis and Bayes discrimination were made among the deteriorate rate of quantitative visual field and 28 factors from the combined investigation. Only the hemorrheological index could be introduced into the multiply regression equations. The more the damage of visual function in POAG patients, the more accurate the discriminatory effect. Based upon the results, and the reports of articles published as well as the search of 1982-1989 Compact Combridge MEDLINE Medical data base, the new clinical concept could be presented that POAG might belong to the scope of blood hyperviscosity syndromes. When IOP elevation and the decrease of ocular artery pressure existed, the damage of visual function in POAG patients should be deteriorated.

Adult↗
PubMed2003

The diffusion and sorption of volatile organic compounds through kaolinitic clayey soils.

Laboratory experiments to estimate the effective molecular diffusion coefficient (D(e)) and sorption coefficient (K(d)) for volatile organic compounds through natural clayey soils were conducted using diffusion testing apparatus. The compounds tested were methyl ethyl ketone (MEK), toluene and trichloroethylene (TCE). The D(e) and K(d) values were determined by a curve fitting procedure. The compound losses, and the effects of porous disks used in the apparatus were significant. The transport of MEK was faster than that of TCE and toluene because of the lower sorption to the soils. The D(e) values of all the compounds were of the order of 10(-10) m(2)/s and smaller than the diffusion coefficient in pure aqueous solution at infinite dilution (D(0)), due to the tortuosity of the samples. The effects of the sample thickness on the parameter determination were not significant. Comparison to the K(d) values estimated from batch sorption tests and from organic carbon content (f(oc))-based predictions showed that the diffusion test results were intermediate between those from the other two methods. The diffusion tests use compacted soil samples and should be more relevant to in situ conditions, but the reliability of the tests is affected by large compound losses that cause uncertainties in their interpretation. It is recommended that more than one method be used to assess K(d) values.

Adsorption↗
PubMed2004

SIMBAD: a field radiometer for satellite ocean-color validation.

A hand-held radiometer, called SIMBAD, has been designed and built specifically for evaluating satellite-derived ocean color. It provides information on the basic ocean-color variables, namely aerosol optical thickness and marine reflectance, in five spectral bands centered at 443, 490, 560, 670, and 870 nm. Aerosol optical thickness is obtained by viewing the Sun disk and measuring the direct atmospheric transmittance. Marine reflectance is obtained by viewing the ocean surface and measuring the upwelling radiance through a vertical polarizer in a geometry that minimizes glitter and reflected sky radiation, i.e., at 45 degrees from nadir (near the Brewster angle) and at 135 degrees in azimuth from the Sun's principal plane. Relative inaccuracy on marine reflectance, established theoretically, is approximately 6% at 443 and 490 nm, 8% at 560 nm, and 23% at 670 nm for case 1 waters containing 0.1 mg m(-3) of chlorophyll a. Measurements by SIMBAD and other instruments during the Second Aerosol Characterization Experiment, the Aerosols-99 Experiment, and the California Cooperative Oceanic Fisheries Investigations cruises agree within uncertainties. The radiometer is compact, light, and easy to operate at sea. The measurement protocol is simple, allowing en route measurements from ships of opportunity (research vessels and merchant ships) traveling the world's oceans.

Journal Article↗
PubMed2001

Direct detection of a microlens in the Milky Way.

The nature of dark matter remains mysterious, with luminous material accounting for at most approximately 25 per cent of the baryons in the Universe. We accordingly undertook a survey looking for the microlensing of stars in the Large Magellanic Cloud (LMC) to determine the fraction of Galactic dark matter contained in massive compact halo objects (MACHOs). The presence of the dark matter would be revealed by gravitational lensing of the light from an LMC star as the foreground dark matter moves across the line of sight. The duration of the lensing event is the key observable parameter, but gives non-unique solutions when attempting to estimate the mass, distance and transverse velocity of the lens. The survey results to date indicate that between 8 and 50 per cent of the baryonic mass of the Galactic halo is in the form of MACHOs (ref. 3), but removing the degeneracy by identifying a lensing object would tighten the constraints on the mass in MACHOs. Here we report a direct image of a microlens, revealing it to be a nearby low-mass star in the disk of the Milky Way. This is consistent with the expected frequency of nearby stars acting as lenses, and demonstrates a direct determination of a lens mass from a microlensing event. Complete solutions such as this for halo microlensing events will probe directly the nature of the MACHOs.

Journal Article↗
PubMed2005

Development of the needle insertion robot for percutaneous vertebroplasty.

Percutaneous Vertebroplasty (PVP) is an effective and less invasive medical treatment for vertebral osteoporotic compression fractures. However, this operative procedure is quite difficult because an arcus vertebra, which is narrow, is needled with accuracy, and an operator's hand is exposed to X-ray continuously. We have developed a needle insertion robot for Percutaneous Vertebroplasty. Its experimental evaluation on the basic performance of the system and needle insertion accuracy are presented. A needle insertion robot is developed for PVP. This robot can puncture with accuracy and an operator does not need to be exposed to X-ray. The mechanism of the robot is compact in size (350 mm x D 400 mm x H270 mm, weight: 15 kg) so that the robot system can be inserted in the space between C-arm and the patient on the operating table. The robot system is controlled by the surgical navigation system where the appropriate needle trajectory is planned based on pre-operative three-dimensional CT images. The needle holding part of the robot is X-ray lucent so that the needle insertion process can be monitored by fluoroscopy. The position of the needle during insertion process can be continuously monitored. In vitro evaluation of the system showed that average position and orientation errors were less than 1.0 mm and 1.0 degree respectively. Experimental results showed that the safety mechanism called mechanical fuse released the needle holding disk properly when excessive force was applied to the needle. These experimental results demonstrated that the developed system has the satisfactory basic performance as needle insertion robot for PVP.

Bone Cements↗
PubMed1981

Solution structural studies of chromatin fibers.

We report solution structural studies on 9--16-kilobase (kb) fragments of the 30-nm chromatin fiber isolated from calf thymus nuclei. Samples were stabilized by dimethylsuberimidate cross-linking in 100 mM salt concentration to ensure retention of a compact conformation. Electron microscopy, sedimentation diffusion, light scattering, and gel electrophoresis were used to characterize materials which were fractionated by size by utilizing sucrose gradient sedimentation. Measurements reported include the translational frictional coefficient as determined by quasielastic light scattering and the rotational frictional coefficient as deduced from transient electric dichroism. These frictional properties were combined to yield 33 +/- 3 nm for the diameter of the fiber and a length of 1.5 +/- 0.1 nm per nucleosome. Assuming a superhelix pitch of 11 nm, we calculate 7.5 +/- 0.5 nucleosomes per superhelical turn. The 30-nm fiber was found to reach saturation of electric field orientation at about 10--13 kV/cm and to lack a detectable permanent dipole moment, implying no polarity of the fiber. The limiting reduced dichroism rho was found to be +0.06, intermediate between the values expected if the nucleosomal disk diameters were parallel (rho expected = -3/8) or perpendicular (rho expected +3/4) to the fiber axis. This result implies an average angle of 51 degrees between the fiber axis and the local DNA (nucleosomal) superhelix axis and rules out many of the simple models which have been proposed for the detailed structure of the 30-nm fiber.

Animals↗
PubMed1993

The three-dimensional structure of canavalin from jack bean (Canavalia ensiformis).

The three-dimensional structure of the vicilin storage protein canavalin, from Canavalia ensiformis, has been determined in a hexagonal crystal by x-ray diffraction methods. The model has been refined at 2.6 A resolution to an R factor of 0.197 with acceptable geometry. Because of proteolysis, 58 of 419 amino acids of the canavalin polypeptide are not visible in the electron density map. The canavalin subunit is composed of two extremely similar structural domains that reflect the tandem duplication observed in the cDNA and in the amino acid sequence. Each domain consists of two elements, a compact, eight-stranded beta-barrel having the "Swiss roll" topology and an extended loop containing several short alpha-helices. The root mean square deviation between 84 pairs of corresponding C alpha atoms making up the strands of the two beta-barrels in a subunit is 0.78 A, and for 112 pairs of structurally equivalent C alpha atoms of the two domains the deviation is 1.37 A. The interface between domains arises from the apposition of broad hydrophobic surfaces formed by side chains originating from one side of the beta-barrels, supplemented by at least four salt bridges. The interfaces between subunits in the trimer are supplied by the extended loop elements. These interfaces are also composed primarily of hydrophobic residues supplemented by six salt bridges. The canavalin subunits have dimensions about 40 x 40 x 86 A, and the oligomer is a disk-shaped molecule about 88 A in diameter with a thickness of about 40 A. The distribution of domains lends a high degree of pseudo-32-point group symmetry to the molecule. There is a large channel of 18 A diameter, lined predominantly by hydrophilic and charged amino acids, running through the molecule along the 3-fold axis. The majority of residues conserved between domains and among vicilins occur at the interface between subunits but appear otherwise arbitrarily distributed within the subunit, although predominantly on its exterior.

Amino Acid Sequence↗
PubMed1983

The arrangement of the subunits of the acetylcholine receptor of Torpedo californica.

The monomeric form of the acetylcholine receptor from torpedo is composed of five, membrane-spanning chains with the stoichiometry alpha 2 beta gamma delta. The native receptor is predominantly a dimer cross-linked by a disulfide bridge between delta chains. We reduced native dimer to monomer and generated a different dimer by diamide-induced disulfide formation specifically between beta chains. Purified beta-beta cross-linked dimer, when adsorbed to a carbon film and negatively stained, appears in the electron microscope as two contiguous disks, frequently with central, stain-filled pits; i.e. it looks like native receptor in situ viewed normal to the plane of the membrane. We take the region of closest approach of the disks to mark the portions of the beta chains involved in the cross-link. In addition, we tagged the acetylcholine binding sites (one on each alpha chain) for electron microscopic identification, using a complex of monobiotinylated cobratoxin and avidin. Based on the locations of avidins bound to the beta-beta cross-linked dimer, the two toxin binding sites/monomer appear to be separated on the average by 110 degrees, as measured between lines from the center of the monomer to the centers of the avidins. One toxin binding site appears close to the beta-beta cross-link and the other close to the end of the monomer opposite to the cross-link; these locations are similar to the locations of the toxin binding sites relative to the delta-delta cross-link in native dimer. On the assumptions that the chains are compact units and are arranged in a unique order around the central pit, we interpret these results as indicating that the alpha chains are not contiguous and that neither the beta chain nor the delta chain lies between them. Therefore, the arrangement of the chains most easily reconciled with our assumptions and observations is alpha gamma alpha beta delta.

Animals↗
PubMed1983

Bacteriophage phi W-14: the contribution of covalently bound putrescine to DNA packing in the phage head.

Bacteriophage phi W-14 is unusual because its DNA contains 12 mol% of the hypermodified pyrimidine, alpha-putrescinylthymine. The phi W-14 virion is similar in morphology to T4, except that the phi W-14 head is isometric rather than prolate, there is no collar-whisker structure associated with the neck, the tail fibers are short (approximately 15 nm), and the base plate terminates in small plates or knobs rather than spikes. The contractile tail sheath of phi W-14 appears to have a right-handed helical arrangement of subunits with a pitch in the extended form of approximately 20 nm. The "stacked disk" appearance of the tail sheath visible on negatively stained particles has a periodicity of 3-4 nm. The protein shell of the head has a similar thickness (2-3 nm) to that of T4. The phi W-14 virion contains at least 17 different polypeptide species. Based on measurements from electron micrographs of negatively stained phage particles on the same grid square, the volume of the phi W-14 head was estimated to be approximately 72% that of the T4 head. Surprisingly, however, the lengths of the DNA molecules released from phi W-14 and T4 heads by osmotic shock were 59.6 +/- 1.9 and 62.1 +/- 2.4 microns, respectively. am42 is an amber mutant of phi W-14 in which there is only 5 mol% putThy in the DNA made in the nonpermissive host. am42 virions are morphologically normal, but the length of the DNA released from these virions is only 53.1 +/- 3.1 microns. We conclude that phi W-14 DNA is packed much more compactly than T4 DNA into a virion of similar morphology and comparable complexity and that the tight packing is a consequence of, and dependent upon, the presence of putThy in phi W-14 DNA.

Bacteriophages↗
PubMed2003

Comparison of the detectability of high- and low-contrast details on a TFT screen and a CRT screen designed for radiologic diagnosis.

RATIONALE AND OBJECTIVES: To evaluate the detection rate of fine details of a new thin-film transistor (TFT) grayscale monitor designed for radiologic diagnosis, compared with a type of cathode ray tube (CRT) screen used routinely for diagnostic radiology. METHODS: Fifteen radiographs of a statistical phantom presenting low- and high-contrast details were obtained and read out with an Agfa ADC compact storage phosphor system. Each radiograph presented 60 high-density (high-contrast) and 60 low-density (low-contrast) test bodies. Approximately half the test bodies contained holes with different diameters. Observers were asked to detect the presence or absence of a hole in the test body on a 5-point confidence range. The total of 1800 test bodies was reviewed by 5 radiologists on the TFT monitor (20.8 inches; 1536 x 2048 pixels; maximum luminance, 650 cd/m2; contrast, 600:1) and the CRT monitor (21 inches; P45 Phosphor; 2048 x 2560 pixels operated at 1728 x 2304 pixels; maximum luminance, 600 cd/m2; contrast, 300:1). The data were analyzed by receiver-operator characteristic analysis. RESULTS: For high-contrast details, the mean area under the curve rated 0.9336 for the TFT monitor and 0.9312 for the CRT monitor. For low-contrast details, the mean area under the curve rated 0.9189 for the TFT monitor and 0.9224 for the CRT monitor. At P <or= 0.05, no statistically significant difference could be detected between the 2 observational modalities for both (holes in high- and low-contrast disks) types of artifacts. CONCLUSIONS: The TFT screen performs as well as CRT monitors for the detection of fine details in both high- and low-contrast environments. Further studies with images derived from clinical routine are necessary before safely using TFT monitors in clinical practice.

Phantoms, Imaging↗
PubMed2005

Ejection of dust by elastic waves in collisions between millimeter- and centimeter-sized dust aggregates at 16.5 to 37.5 m/s impact velocities.

We report on experiments in which millimeter-sized Si O2 dust aggregates consisting of (sub)-micrometer-sized grains impact into centimeter-sized targets that consist of the same kind of dust particles. The porosity of the granular targets is between 74% and 88%. Impact speeds are between 16.5 and 37.5 m/s with most impacts around 25 m/s . Compaction of the target by the impacting dust aggregate creates a crater which is several millimeters deep and 2-3 cm in diameter. We do not detect a significant amount of ejecta originating at the crater. We do observe a large amount of ejecta though. These are dust granules that are ejected from the whole target surface up to significant distances away from the impact site. This implies that elastic waves induced by the impact are an efficient mechanism to eject material. The estimated mass of these ejecta can be larger than 10 times the projectile mass. The ejecta velocity is uniform across the surface. It is typically 0.5% of the impact velocity. We apply these results to the problem of planetesimal formation. Under microgravity ablation of a dusty body or mass gain in a dust-dust collision might result. This depends on the parameters of the impact. Due to the low ejecta velocities, net growth is also possible in secondary collisions after an eroding primary collision if the body is placed in a gas flow. Thus, for a large number of typical conditions for dust-dust collisions in protoplanetary disks, formation of a larger body results from an impact.

Journal Article↗