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PubMed2005

Influence of erythromycin A on the microbial populations in aquaculture sediment microcosms.

Degradation of erythromycin A was studied using two sediment samples obtained from the salmon and trout hatchery sites at Hupp Springs (HS) and Goldendale (GD), Washington, United States. The former site had been treated for 3 years with erythromycin-medicated feed prior to the experiments, and the latter site had not been treated with any antibiotic for at least 6 years. The two sediment microcosms treated with either N-[methyl-14C]erythromycin A or [1,3,5,7,9,11,13-14C]erythromycin A showed S-curves for erythromycin A mineralization with a prolonged lag time of 120 days, except for GD microcosms treated with [1,3,5,7,9,11,13-14C]erythromycin A. We proposed a simplified logistic model to interpret the mineralization curves under the assumption of the low densities of initial populations metabolizing erythromycin A. The model was helpful for knowing the biological potential for erythromycin A degradation in sediments. Although erythromycin A added to the two sediment microcosms did not significantly alter the numbers of total viable aerobic bacteria or erythromycin-resistant bacteria, it affected the bacterial composition. The influence on the bacterial composition appeared to be greater in GD microcosms without pre-exposure to antibiotics. PCR-RFLP and DNA sequence analyses of the 16S ribosomal RNA gene and the erythromycin esterase (ere) gene revealed that ereA type 2 (ereA2) was present in potentially erythromycin-degrading Pseudomonas spp. strains GD100, GD200, HS100, HS200 and HS300, isolated from erythromycin-treated and non-treated GD and HS microcosms. Erythromycin A appeared to influence the development and proliferation of strain GD200, possibly via the lateral gene transfer of ereA2.

Anti-Bacterial Agents↗
PubMed1989

Effects of salinity on the survival of non-O1 Vibrio cholerae under environments of low temperature.

Under low temperature conditions, the effects of survival and growth of non-O1 Vibrio cholerae were studied in laboratory microcosms. As the environmental factors, various concentrations of NaCl solution and that of mono- and bivalent cation added nutrient of polypeptone were used under several temperatures. The results of these experiments suggested an extended survival of non-O1 V. cholerae at low temperature. When a range of NaCl concentration in microcosms water was between 0.4% and 2.0% with absent of nutrient, the survival of this organism was good under the temperature from 10 degrees C to 20 degrees C. With added nutrient, when about 10 mM bivalent cation and over 0.3% NaCl co-existed, this strain was able to grow at 10 degrees C, and showed good survival. This finding suggested the possibility of survival under 10 degrees C.

Cold Temperature↗
PubMed1995

Temperature-induced recovery of Vibrio cholerae from the viable but nonculturable state: growth or resuscitation?

Vibrio cholerae cells were incubated at 4 degrees C in nutrient-limited artificial seawater (ASW) microcosms. Plate counts declined from 8 x 10(5) to less than 2 c.f.u. ml-1 in about 23 d. When samples of microcosms were shifted to 30 degrees C, plate counts increased to 2.2 x 10(5) c.f.u. ml-1 in 72 h. An experiment was performed to determine whether culturable cells obtained after temperature upshifts were the result of 'resuscitation', or outgrowth, of nonculturable cells or of cell division and growth of the few culturable cells that remained in samples. Prior to temperature upshift, samples from the microcosms were diluted 10- and 100-fold in filter-sterilized (0.1 microns) ASW from the microcosms. Undiluted, 1/10, and 1/100 diluted samples recovered culturability to about 2.2 x 10(5) c.f.u. ml-1 within 72 h of temperature upshift. If resuscitation of nonculturable cells had occurred, the resultant number of culturable cells in diluted samples would have been 1/10 and 1/100 that of undiluted samples, respectively. In microcosms where plate counts had declined to less than 1 c.f.u. ml-1, 1/100 diluted samples did not regain culturability, i.e. no culturable cells remained from which growth could occur. Our conclusions are that in the experiments reported here, recovery of culturable cells on temperature upshifts resulted from growth and that there were no growth-inhibiting factors in the spent growth medium, supported by the finding that about 10(2) recovered V. cholerae cells ml-1 inoculated into filter-sterilized microcosm ASW grew to about 6.2 x 10(5) c.f.u. ml-1 in 24 h, confirming that V. cholerae is capable of significant growth in ASW.

Colony Count, Microbial↗
PubMed2006

Influence of electron donor, oxygen, and redox potential on bacterial perchlorate degradation.

Experiments were conducted to assess the influence of electron donor, redox potential, and dissolved oxygen on bacterial perchlorate degradation. Microcosms containing a diverse, perchlorate-acclimated, bacterial culture fed lactate at a 1:1 electron donor-to-perchlorate ratio (electron-equivalent basis) degraded perchlorate more slowly (k = 0.038 mg ClO4-/mg VSS h) and to a lesser extent than microcosms fed lactate at 2:1 and 4:1 ratios (k = 0.045 mg ClO4-/mg VSS h). The optimal COD/ClO4- ratio to consume all perchlorate and all electron donor was approximately 1.2 mg COD/mg ClO4-. In experiments where the redox potential was held constant, the extent of perchlorate degradation increased with decreasing redox potential, and 100% removal was only achieved at the lowest redox potential examined (-220 mV); however, perchlorate degradation (32% of added perchlorate) was observed as high as +180 mV. Additions of oxygen to actively degrading treatments did not adversely effect perchlorate degradation. It appears, therefore, that addition of excess electron donor is sufficient to negate potential inhibitory effects of molecular oxygen. If the redox conditions are more oxidized, however, the rate and extent of perchlorate degradation will be significantly decreased. This is the first report of perchlorate degradation under oxidized conditions using an environmentally relevant, diverse, bacterial enrichment culture, and this is also the first report of perchlorate reduction occurring at appreciable dissolved oxygen concentrations in a batch system.

Bacteria↗
PubMed2006

Nutrient availability and atmospheric CO2 partial pressure modulate the effects of nutrient heterogeneity on the size structure of populations in grassland species.

BACKGROUND AND AIMS: Size-asymmetric competition occurs when larger plants have a disproportionate advantage in competition with smaller plants. It has been hypothesized that nutrient heterogeneity may promote it. Experiments testing this hypothesis are inconclusive, and in most cases have evaluated the effects of nutrient heterogeneity separately from other environmental factors. The aim of this study was to test, using populations of Lolium perenne, Plantago lanceolata and Holcus lanatus, two hypotheses: (a) nutrient heterogeneity promotes size-asymmetric competition; and (b) nutrient heterogeneity interacts with both atmospheric CO2 partial pressure (P(CO2)) and nutrient availability to determine the magnitude of this response. METHODS: Microcosms consisting of monocultures of the three species were grown for 90 d in a factorial experiment with the following treatments: P(CO2) (37.5 and 70 Pa) and nutrient availability (NA; 40 and 120 mg of N added as organic material) combined with different spatial distribution of the organic material (NH; homogeneous and heterogeneous). Differences in the size of individual plants within populations (size inequality) were quantified using the coefficient of variation of individual above-ground biomass and the combined biomass of the two largest individuals in each microcosm. Increases in size inequality were associated with size-asymmetric competition. KEY RESULTS: Size inequality increased when the nutrients were heterogeneously supplied in the three species. The effects of NH on this response were more pronounced under high nutrient supply in both Plantago and Holcus (significant NA x NH interactions) and under elevated P(CO2) in Plantago (significant P(CO2) x NA x NH interaction). No significant two- and three-way interactions were found for Lolium. CONCLUSIONS: Our first hypothesis was supported by our results, as nutrient heterogeneity promoted size-asymmetric competition in the three species evaluated. Nutrient supply and P(CO2) modified the magnitude of this effect in Plantago and Holcus, but not in Lolium. Thus, our second hypothesis was partially supported.

Atmospheric Pressure↗
PubMed1999

Viral lysis and bacterivory during a phytoplankton bloom in a coastal water microcosm

The relative importance of viral lysis and bacterivory as causes of bacterial mortality were estimated. A laboratory experiment was carried out to check the kind of control that viruses could exert over the bacterial assemblage in a non-steady-state situation. Virus-like particles (VLP) were determined by using three methods of counting (DAPI [4',6-diamidino-2-phenylindole] staining, YOPRO staining, and transmission electron microscopy). Virus counts increased from the beginning until the end of the experiment. However, different methods produced significantly different results. DAPI-stained VLP yielded the lowest numbers, while YOPRO-stained VLP yielded the highest numbers. Bacteria reached the maximal abundance at 122 h (3 x 10(7) bacteria ml-1), after the peak of chlorophyll a (80 μg liter-1). Phototrophic nanoflagellates followed the same pattern as for chlorophyll a. Heterotrophic nanoflagellates showed oscillations in abundance throughout the experiment. The specific bacterial growth rate increased until 168 h (2.6 day-1). The bacterivory rate reached the maximal value at 96 hours (0.9 day-1). Bacterial mortality due to viral infection was measured by using two approaches: measuring the percentage of visibly infected bacteria (%VIB) and measuring the viral decay rates (VDR), which were estimated with cyanide. The %VIB was always lower than 1% during the experiment. VDR were used to estimate viral production. Viral production increased 1 order of magnitude during the experiment (from 10(6) to 10(7) VLP ml-1 h-1). The percentage of heterotrophic bacterial production consumed by bacterivores was higher than 60% during the first 4 days of the experiment; afterwards, this percentage was lower than 10%. The percentage of heterotrophic bacterial production lysed by viruses as assessed by the VDR reached the highest values at the beginning (100%) and at the end (50%) of the experiment. Comparing both sources of mortality at each stage of the bloom, bacterivory was found to be higher than viral lysis at days 2 and 4, and viral lysis was higher than bacterivory at days 7 and 9. A balance between bacterial losses and bacterial production was calculated for each sampling interval. At intervals of 0 to 2 and 2 to 4 days, viral lysis and bacterivory accounted for all the bacterial losses. At intervals of 4 to 7 and 7 to 9 days, bacterial losses were not balanced by the sources of mortality measured. At these time points, bacterial abundance was about 20 times higher than the expected value if viral lysis and bacterivory had been the only factors causing bacterial mortality. In conclusion, mortality caused by viruses can be more important than bacterivory under non-steady-state conditions.

Journal Article↗
PubMed2004

Examination of a smallest CELSS (microcosm) through an individual-based model simulation.

Research of the effect of space environment on an ecosystem consisting of plants and animals is essential when they are to be positively used in space. Although there have been experiments on various organisms under space environment in the past, they mainly studied the effect of space environment on an individual organism or a single species. Microcosm is drawing attention as an experimental material of an ecosystem consisting of multiple species. The object in this research is to understand the nature of this network system called ecosystem. Thus, a mixed microorganism culturing system consisting of three types of microorganisms which form a minimum food chain system as a closed ecosystem (chlorella as the producer, bacteria as the decomposer, and rotifer as the consumer) was taken for the subject, on which to research the universal characteristics of ecosystems. From the results of experiments under the terrestrial environment, formation of colonies, which is an ecological structure, has been observed at its mature stage. The organisms form an optimal substance circulation system. Therefore, formation of colonies in simulation models is important. Many attempts have been made to create ecosystem models. For example, the Lotka-Volterra model forms a simultaneous equation with the differential equation expressing predator and prey relationship and many numerical calculations have been conducted on various ecosystems based on expanded L-V models. Conventionally, these top-down methods have been used. However, since this method only describes the average concentration of organisms that are distributed uniformly throughout the system and cannot express the spatial structure of the system, it was difficult to express ecosystem structures like colonies and density distributions. In actual ecosystems, there is heterogeneity in the number of individuals and in substance density, and this is thought to have great significance in ecosystems. Consequently, an individual-based model was used that applies rules to predator-prey relationship, suppression, production, self suppression, etc., of each species. It enabled the emergence of the overall system only by its local rules, and it was possible to reproduce colony generation. In addition, the transition and the ratio of populations for each species match well with experimental results.

Animals↗
PubMed2000

Experimental evidence of predation by juvenile flounder, Platichthys flesus, on a shallow water meiobenthic community.

In the northern Baltic Sea juvenile flounder, Platichthys flesus, occur in high abundances on shallow sandy bottoms in late summer and autumn. They feed mainly on meiofauna and the ontogenetic switch to macrofaunal sized food occurs at a larger size here than in other areas, exemplifying the high relative importance of meiofauna. Consequently, juvenile P. flesus in the Baltic feed for a longer period on meiofauna, and could thus be expected to have a stronger predation effect on the meiofaunal assemblages. In this study the predation effects of juvenile P. flesus on meiofaunal abundances and community structure were studied using microcosms that were sampled repeatedly over a 3-week period. Significant differences between treatment and control were found for the total number of taxa, for abundances of harpacticoids, copepod nauplii and ostracods. The nematode community was not affected, but one genus, Axonolaimus, was negatively affected by predation. The predation affected meiofaunal community structure as the major taxon diversity was significantly reduced. The results suggest that the meiofauna on shallow sandy bottoms may be structured by juvenile P. flesus, and the combined predation pressure of juvenile flounder and other epibenthic predators in the area might be considerable. Microcosms are effective in testing natural predation, especially on meiofaunal communities, but field experiments should be conducted to account for the physical characteristics of the area studied.

Journal Article↗
PubMed1992

The interpersonal approach to group psychotherapy.

The interpersonal model of group psychotherapy emphasizes the critical nature of peer interactions and consequent dynamic interpersonal learning. The author illustrates basic concepts of the model through a series of clinical vignettes. The central importance of the group as a social microcosm, cohesion and group process, here-and-now activation, and corrective emotional experience are documented, as is the role of the therapist in facilitating interpersonal feedback and effective therapeutic work.

Adult↗
PubMed2005

The influence of sediment resuspension on the degradation of phenanthrene in flow-through microcosms.

The effect of sediment resuspension on the mineralization of phenanthrene was examined in microcosms and sediment slurries. In computer-controlled, flow-through microcosms, 14C-phenanthrene-amended sediments were resuspended into overlying oxic water at frequencies of 12, 4, 1, 0.25 and 0 d(-1). In slurry bottle experiments 14C-phenanthrene-amended sediments were continuously resuspended under oxic (excess air headspace) and anoxic (N2 headspace) conditions and mineralization was measured at periods from 2 h to 7 days. Our main findings were: (1) mineralization rate constants from the microcosms ranged from 0.001 to 0.01 d(-1) and increased with frequency of resuspension, (2) these rates fell between those measured in oxic and anoxic slurries and were predicted within a factor of 2.5 by a model in which mineralization depended on the degree of oxygen exposure, and (3) the phenanthrene-degrading bacterial community was more active in resuspended sediments incubated in the microcosms than in sediments which were not resuspended, or which were stored under refrigeration. We conclude from these experiments that the effects of sediment resuspension on phenanthrene degradation are consistent with a primary role of average oxygen exposure, and also an alteration in the PAH-degrading activity of microbial populations.

Bacterial Physiological Phenomena↗
PubMed2002

Fate and bioaccumulation of isoproturon in outdoor aquatic microcosms.

To gain information concerning the ecotoxicity of isoproturon (IPU) on aquatic ecosystems, six experimental ponds of 5 m3 each were studied. All the experiments were conducted during the summer over two years. Three different types of ecosystems were tested in 1994 and one type of ecosystem was selected and repeated in 1995 with three replicates. In each case, the initial concentration of IPU contamination was set at 10 microg/L. The IPU concentration was determined in the water column and in different species (mainly plants) of the microcosms. A first-order kinetic decrease in IPU concentration was observed in 1994, with half-life ranging from 15 to 35 d, depending on the microcosms. This relatively fast decrease was also confirmed in 1995, but it reached a constant value after two months. A high variability of the IPU concentration was observed in exposed plants, with bioconcentration factors ranging from 100 to 1,200 with large coefficients of variation. The observed plant bioconcentration factors are higher than those predicted by usual numerical models, probably due to the specific binding of IPU on one protein of the photosynthetic apparatus. Our data show that bioconcentration does not occur in mollusks but is important in photosynthetic organisms. Plant bioconcentration and microbial biodegradation are the main processes involved in the IPU decay in our outdoor aquatic microcosms.

Animals↗
PubMed1999

Evaluation of Xanthomonas campestris survival in a soil microcosm system.

Xanthomonas campestris pv. campestris is a pathogen of cruciferous plants. We studied the survival of the wild type strain and mutant derivatives which are deficient in exopolysaccharide (EPS) or in extracellular protease synthesis in soil microcosms in order to test the hypothesis that, in this environment, adherence to soil particles and scavenging of nutrients are very important strategies for bacterial survival. In sterile soil microcosms, differences in survival were only observed between the EPS producer and its mutant. In non-sterile soil experiments, survival of Prt- mutant was similar to EPS- mutant, suggesting that both characteristics have a strong influence in survival in the presence of the natural bacterial community. Bacterial decrease represented by the slope of regression lines was higher in non-sterile soil microcosms due to the influence of biotic interactions.

Bacterial Proteins↗
PubMed2000

Competition between n-alkane-assimilating yeasts and bacteria during colonization of sandy soil microcosms.

An n-alkane-assimilating strain of Candida tropicalis was selected in sandy soil inoculated with microorganisms from contaminated sites. Competition experiments with n-alkane utilizers from different strain collections confirmed that yeasts overgrow bacteria in sandy soil. Acidification of the soil is one of the colonization factors useful for the yeasts. It can be counteracted by addition of bentonite, a clay mineral with high ion exchange capacity, but not, however, by kaolin. Strains of different yeast species showed different levels of competitiveness. Strains of Arxula adeninivorans, Candida maltosa, and Yarrowia lipolytica overgrew strains of C. tropicalis, C. shehatae or Pichia stipitis. Two strains of C. maltosa and Y. lipolytica coexisted during several serial transfers under microcosm conditions.

Alkanes↗
PubMed2005

Study on modification of collagen with chondroitin sulfate on the microcosmic level.

To observe the changes during the process of modificating collagen with chondroitin sulfate (CS), a series of experiments was designed. Collagen scaffold was constructed by lyophilization. CS was attached into the scaffold through crosslinking. Solid-liquid phase separation method was used to shape 3D porous structure. Both kinds of scaffolds were investigated by Transmission Electron Microscopy (TEM), Scanning Electron Microscopy (SEM), and Electron Spectroscopy for Chemical Analysis (ESCA), Amino Acid Analyses (AAA), and so on for structures and characteristics. The results showed that CS could improve the properties of collagen both in biocompatibility and mechanical property. It increased the polar groups on the surface of scaffold and protected amino acid residues of collagen fiber. At the same time, the structure of scaffold became more regular because of the increase of polar groups. It was indicated that those were the real reasons for the improvement of modification.

Amino Acids↗
PubMed2002

Responses of microbial activity and decomposer organisms to contamination in microcosms containing coniferous forest soil.

Soil respiration from microcosms contaminated with pentachlorophenol, 2-ethanolhexanoate, creosote, CuSO4, and benomyl was measured in order to evaluate usefulness of soil microcosms and microbial respiration rate monitoring as a toxicity test in soils with high organic matter content. Coniferous forest soil and its organisms were used as test objects. In addition, how a short-term low temperature period including frost affects respiration dynamics in stressed soils was studied, i.e., whether contaminants reduce resistance of the community to other (also natural) stresses. In addition, at the end of the experiment, effects of contaminants on faunal and microbial community structures were analyzed. Soil respiration measurements from the microcosms appeared to be a sensitive parameter for testing community-level effects of chemicals in the soil with high organic matter content. An 84-day exposure had acute effects, long-term effects, delaying effects, and total recovery of community respiration. Direct negative and indirect positive effects of chemical contamination on the community of soil organisms were found. Responses to contamination of soil respiration rate and structure of the soil community were parallel. Addition of pentachlorophenol, 2-ethanolhexane, and Cu into the soil reduced frost resistance of the decomposer community. It was concluded that soil respiration monitoring of artificially contaminated soil microcosms seems to be a useful tool for testing community-level toxic effects of chemicals.

Antidotes↗
PubMed2001

Aquatic Actinomycete-Fungal Interactions and Their Effects on Organic Matter Decomposition: A Microcosm Study.

The role of fungi in the decomposition of organic matter in streams has been well examined, although the role of bacterial antagonists in such processes has gained little attention. To examine bacterial-fungal interactions, experiments involving pairwise combinations of four actinomycete isolates (A1+ and A2+ could remove chitin from chitin-containing media, and A1? and A2? could not) and two fungal isolates (F+ a true fungus, F? an oomycote) were conducted. For each bacterial-fungal combination, 250-ml microcosms were sampled at 8 day intervals for 32 days. Microbial biomass and organic matter, as well as the activities of five extracellular enzymes, were measured. Each experiment consisted of a control group and four treatment groups. Controls comprised sterilized stream water and macrophytes. The first treatment was inoculated with only actinomycetes (~103 cells ml-1), the second treatment was inoculated with only fungi (~102 cells ml-1), the third group was inoculated simultaneously with actinomycetes and fungi, and the fourth group was inoculated with actinomycetes 2 days after fungal establishment. For all combinations, the lowest rates of organic matter decomposition were expected in the controls, as a result of only physical degradation. In contrast, the greatest rates of organic matter decomposition were predicted in treatments inoculated with F+ 2 days prior to A1? or A2?. Greater than 50% of the organic matter was decomposed in each of the fungal treatments. Fungal-actinomycete interactions resulted in reduced fungal biomass relative to the fungal-only treatments. However, when inoculated 2 days apart, combinations of F? and actinomycetes resulted in enhanced rates of organic matter decomposition, as well as greater levels of extracellular enzyme activities. These results demonstrate that actinomycete-fungal interactions and their colonization dynamics affect the accumulation of biomass, extracellular enzyme activities, and rates of organic matter decomposition.

Journal Article↗
PubMed1994

Fate of a volatile chlorinated solvent in indoor aquatic microcosms: sublethal and static exposure to [14C]dichloromethane. Groupe pour l'Etude du Devenir de Xénobiotiques dans l'Environnement (GEDEXE).

The goal of this work was to study the fate of dichloromethane in indoor aquatic microcosms after a sublethal and static exposure to simulate the accidental contamination of a lenitic ecosystem such as littoral lake zone or a pond. This kind of ecosystem is characterized by high productive capacity and rich biocoenose, and are usually first affected by acute or chronic pollution. Microcosms containing immersed bryophytes (Fontinalis antipyretica), macrophytes (Lemna minor, Groenlendia densa, Elodea canadensis), molluscs (Physa fontinalis), crustaceans (Daphnia magna), and unicellular green algae (Scenedesmus subspicatus) were contaminated with sublethal concentrations of dichloromethane or [14C]dichloromethane. The initial mean concentration was 9.9 +/- 3.7 microM. The mean concentration exposure for organisms was 4.5 +/- 1.5 microM. The fate of 14C radioactivity was monitored by measuring the radioactivity of the sediment, water, macro- and microorganism, and atmospheric compartments. Radioactivity in the water disappeared quickly from the microcosms, most likely as [14C]dichloromethane (t1/2 = 5.31 +/- 0.41 days). At the end of the experiments, radioactivity was mainly located in the atmosphere, with traces remaining in the biomass. Under static conditions, the bioaccumulation of 14C radioactivity from the radiolabeled dichloromethane was negligible.

Animals↗
PubMed2005

The influence of arbuscular mycorrhizae and light on Wisconsin (USA) sand savanna understories 1. Plant community composition.

To explain the complex community composition found in Wisconsin (USA) oak savannas, we investigated potentially interacting effects of light gradients and arbuscular mycorrhizal fungi (AMF) on community composition in the greenhouse, using a fully randomized block experimental design. We used plant species, soil, and AMF from a remnant sand savanna in setting up the experiment, using two light and five AMF treatments. Eleven plant species were seeded into 80 microcosms, and they were grown together for 20 weeks. Plant numbers and biomass were measured, and Simpson's index was calculated for both. Data were analyzed using ANOVA and nonparametric ANOVA. We found significant light effects on biomass and on numbers of four species. There were no treatment effects on Simpson's index, and only Schizachyrium numbers showed a significant AMF effect. These findings are consistent with results from other studies of the sand savanna, and, collectively, these data suggest that plant community composition in this species-rich savanna is not strongly influenced by arbuscular mycorrhizae. This is a novel finding with important implications for understanding interactions between plant and AMF diversity in wild communities.

Biodiversity↗