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PubMed2003

The electronic structure of the photoexcited triplet state of free-base (tetraphenyl)porphyrin by time-resolved electron-nuclear double resonance and density functional theory.

The photoexcited triplet states of free-base porphyrin (H(2)P) and free-base tetraphenylporphyrin (H(2)TPP) have been investigated by time-resolved electron paramagnetic resonance and electron-nuclear double resonance in a toluene glass at 80 K. Both the zero-field splitting parameters, D and E, and the proton A(zz) hyperfine coupling tensor components could be determined. D is about 13% larger in H(2)P than in H(2)TPP. In contrast, however, the A(zz) hyperfine coupling tensor components showed differences of less than 2%. To aid the understanding of these results, the electronic structures of H(2)P and H(2)TPP have been modeled using density functional theory. The geometrical structures of both molecules in their lowest triplet states were calculated using the Becke3 Lee-Yang-Parr composite exchange correlation functional and the 6-31G* basis set. Hyperfine couplings for these structures were calculated using the same functional but with the extended EPR-II basis set. These allow unambiguous assignment of the experimentally determined couplings. The theoretical values for H(2)P and H(2)TPP agree with the experimental values in that the presence of the phenyl groups has only a small effect on the unpaired electron spin-density distribution. The difference in sensitivity of the zero-field splitting parameters and the hyperfine couplings to mesophenyl substitution is discussed in terms of the wave functions of the four frontier orbitals of porphyrins introduced by Gouterman.

Electron Spin Resonance Spectroscopy↗
PubMed1999

Theoretical Study of the Electronic Structure of Group 6 [M(CO)(5)X](-) Species (X = NH(2), OH, Halide, H, CH(3)) and a Reinvestigation of the Role of pi-Donation in CO Lability.

Density functional calculations have been employed to investigate the electronic structure of [M(CO)(5)X](-) species (M = Cr, Mo, W; X = NH(2), OH, halide, H, CH(3)) and to compute CO ligand dissociation energies. The calculations indicate that CO loss is most facile from the cis position, and CO dissociation energies are computed to increase along the series X = NH(2) < OH < F < Cl < Br < I < CH(3) < H. These results are in agreement with available experimental data. Trends in CO dissociation are related to the ability of X to stabilize the unsaturated 16e [M(CO)(4)X](-) species formed. In addition, pi-destabilization of the ground-state [M(CO)(5)X](-) species is equally significant. Analysis of the electronic structure of the 18e species shows that Xpi-dpi 4e destabilization results in hybridization at the metal center which enhances trans M-CO but reduces cis M-CO pi-back-donation. Strong pi-donation from X also induces sigma-antibonding interactions between the metal and the cis CO ligands. A fragment analysis reveals that these effects are strongest for the "hard" fluoride, hydroxide, and amide ligands.

Journal Article↗
PubMed2004

The electronic structure of Mn in oxides, coordination complexes, and the oxygen-evolving complex of photosystem II studied by resonant inelastic X-ray scattering.

Resonant inelastic X-ray scattering (RIXS) was used to collect Mn K pre-edge spectra and to study the electronic structure in oxides, molecular coordination complexes, as well as the S1 and S2 states of the oxygen-evolving complex (OEC) of photosystem II (PS II). The RIXS data yield two-dimensional plots that can be interpreted along the incident (absorption) energy or the energy transfer axis. The second energy dimension separates the pre-edge (predominantly 1s to 3d transitions) from the main K-edge, and a detailed analysis is thus possible. The 1s2p RIXS final-state electron configuration along the energy transfer axis is identical to conventional L-edge absorption spectroscopy, and the RIXS spectra are therefore sensitive to the Mn spin state. This new technique thus yields information on the electronic structure that is not accessible in conventional K-edge absorption spectroscopy. The line splittings can be understood within a ligand field multiplet model, i.e., (3d,3d) and (2p,3d) two-electron interactions are crucial to describe the spectral shapes in all systems. We propose to explain the shift of the K pre-edge absorption energy upon Mn oxidation in terms of the effective number of 3d electrons (fractional 3d orbital population). The spectral changes in the Mn 1s2p(3/2) RIXS spectra between the PS II S1 and S2 states are small compared to that of the oxides and two of the coordination complexes (Mn(III)(acac)3 and Mn(IV)(sal)2(bipy)). We conclude that the electron in the step from S1 to S2 is transferred from a strongly delocalized orbital.

Electrons↗
PubMed2004

Mapping the electronic structure of the blue copper site in plastocyanin by NMR relaxation.

The biological function of metalloproteins stems from the electronic and geometric structures of their active sites. Thus, in blue copper proteins such as plastocyanins, an unusual electronic structure of the metal site is believed to contribute to the rapid, long-range electron-transfer reactivity that characterizes these proteins. To clarify this structure-function relationship, numerous quantum chemical calculations of the electronic structure of the blue copper proteins have been made. However, the obtained structures depend strongly on the applied model. Experimental approaches based on ENDOR spectroscopy and X-ray absorption have also been used to elucidate the electronic structure of the blue copper site. Still, the determination of the electronic structure relies on a calibration with quantum chemical calculations, performed on small model complexes. Here we present an approach that allows a direct experimental mapping of the electron spin delocalization in paramagnetic metalloproteins using oxidized plastocyanin from Anabaena variabilis as an example. The approach utilizes the longitudinal paramagnetic relaxation of protons close to the metal site and relies on the dependence of these relaxations on the spatial distribution of the unpaired electron of the metal ion. Surprisingly it is found that the unpaired electron of the copper ion in plastocyanin is less delocalized than predicted by most of the quantum chemical calculations.

Anabaena↗
PubMed2006

Theoretical study of the electronic structure and stability of titanium dioxide clusters (TiO2)n with n = 1-9.

The electronic structure and the stability of both neutral and singly charged (TiO2)n clusters with n = 1-9 have been investigated using the density functional B3LYP/LANL2DZ method. The lowest-lying singlet clusters tend to form some compact structures with one or two terminal Ti-O bonds, which are about 1.4-2.5 eV more stable than the corresponding triplet structures. For the lowest-lying structures, strong infrared absorption lines at 988-1020 cm(-1) due to terminal Ti-O bonds and below 930 cm(-1) due to Ti-O-Ti bridging bonds may be observed, with some characteristic lines at 530-760 cm(-1) due to 3-fold coordinated O-atoms that are comparable with the spectra of rutile and anatase bulk. The holes and excited electrons within triplet structures tend to be localized on the least coordinated O- and Ti-atoms, respectively, with some exceptions possibly due to the electron-hole interaction. The extra electrons within (TiO2)n- clusters and the holes within (TiO2)n+ clusters show a clearer preference of location on the least coordinated Ti- and O-atoms, respectively. For the lowest-lying (TiO2)n clusters, the cluster formation energy per TiO2 unit and the electron affinity tend to increase whereas the ionization potential tends to decrease with the cluster size n. On the other hand, the singlet-triplet and HOMO-LUMO gaps represent the lower and upper limits of the TiO2 bulk band gaps, respectively. The theoretical results agree well with the available experimental data and may be helpful for understanding the chemistry of small (TiO2)n clusters.

Journal Article↗
PubMed2006

A first-principles study of the electronic structure and stability of a lithium aluminum hydride for hydrogen storage.

LiAlH4 holds great promise for reversible hydrogen storage, where a fundamental understanding of hydrogen interaction with the metal elements is essential to further improve its properties. The present paper reports a first-principles study of its stability and electronic structure, using a full potential linearized augmented plane wave (FLAPW) method within the generalized gradient approximation (GGA) for high accuracy. The theoretically calculated heat of formation agrees well with experiment. The electronic structures show that the H atoms bond nonequivalently with the Al in the [AlH4]- ligand, which leads to complex dehydrogenation characteristics of LiAlH4.

Journal Article↗
PubMed2000

Electronic structure of trypsin inhibitor from squash seeds in aqueous solution.

The electronic structure of the trypsin inhibitor from seeds of the squash Cucurbita maxima (CMTI-I) in aqueous solution is obtained by ab initio, all-electron, full-potential calculations using the self-consistent cluster-embedding (SCCE) method. The reactive site of the inhibitor is explained theoretically, which is in agreement with the experimental results. It is shown that the coordinates of oxygen atoms in the inhibitor, determined by nuclear magnetic resonance and combination of distance geometry and dynamical simulated annealing, are systematically less accurate than that of other kinds of heavy atoms.

Binding Sites↗
PubMed2001

Electronic structure of partially hydrogenated Si(100)-( 2 x 1) surfaces prepared by thermal and nonthermal desorption.

The electronic structure of partially hydrogenated Si(100)- (2 x 1) surfaces, prepared by controlled thermal annealing and nonthermal photon stimulated desorption of fully hydrogenated Si(100) surfaces, has been investigated by using valence band photoemission. Thermal and nonthermal desorption are found to produce very specific electronic surface structures. This led us to the discovery of two specific surface states having binding energies of 1.0 and 0.7 eV associated with the isolated Si dimers and single Si dangling bonds, respectively.

Journal Article↗
PubMed2006

Atomic and electronic structures of fluorinated BN nanotubes: computational study.

The atomic and electronic structures of fluorinated BN nanotubes (BNNTs) were investigated by generalized gradient approximation (GGA) density functional theory (DFT). The reaction energies of F2 with pristine single-walled BNNTs to form fluorinated BNNTs are exothermic up to 50% coverage. At lower F coverages (below 50%), fluorines prefer external attachments to boron atoms and stay as far away as possible. At 50% F coverage, fluorines favor attachment to all the boron atoms of the outer surface energetically. Such preferable fluorination patterns and highly exothermic reaction energies hold true for double-walled (and multiwalled) BNNTs when the outer tube surface is considered. Fluorination transforms BNNTs into p-type semiconductors at low F coverages, while high F coverages convert BNNTs into p-type conductors. Therefore, the electronic and transport properties of BNNTs can be engineered by fluorination, and this provides potential applications for fluorinated BNNTs in nanoelectronics.

Journal Article↗
PubMed2005

Ground- and excited-state electronic structure of an iron-containing molecular spin photoswitch.

The electronic structure of the cation of [Fe(ptz)(6)](BF(4))(2), a prototype of a class of complexes that display light-induced excited-state spin trapping (LIESST), has been investigated by time-independent and time-dependent density-functional theories. The density of states of the singlet ground state reveals that the highest occupied orbitals are metal centered and give rise to a low spin configuration Fe(2+)(3d(xy) ( upward arrow downward arrow)3d(xz) ( upward arrow downward arrow)3d(yz) ( upward arrow downward arrow)) in agreement with experiment. Upon excitation with light in the 2.3-3.3 eV range, metal-centered spin-allowed but parity-forbidden ligand field (LF) antibonding states are populated which, in conjunction with electron-phonon coupling, explain the experimental absorption intensities. The computed excitation energies are in excellent agreement with experiment. Contrary to simpler models we show that the LF absorption bands, which are important for LIESST, do not originate in transitions from the ground to a single excited state but from transitions to manifolds of nearly degenerate excited singlets. Consistent with crystallography, population of the LF states promotes a drastic dilation of the ligand cage surrounding the iron.

Journal Article↗
PubMed2006

Dimensional dependence of electronic structure of fullerene polymers.

Fullerene polymers made of C(60) are systematically investigated by means of a first-principles pseudopotential approach within the local density approximation of the density functional theory. We assume 10 different structures of fullerene polymers. The first three are C(60) polymer networks cross-linked by [2+2] cycloadditional four-membered rings, and the other seven are composed of peanut-shaped fused C(60) polymer chains cross-linked by either seven-membered rings or eight-membered rings. Owing to the overlap of wave functions as well as the hybrid networks of sp(2)-like (3-fold coordinated) and sp(3)-like (4-fold coordinated) carbon atoms, the electronic structure is considerably different from each other. We find that the resulting electronic structure is either semiconductor or semimetal depending on the spatial dimensionality of materials.

Journal Article↗
PubMed2003

Electron deficiency in tetrahedral transition-metal clusters: electronic structure and magnetic properties of [Ru4(eta6-C6H6)4(mu3-H)4](2+).

Analysis of the electronic structure of the electron-deficient cluster cation [Ru4(eta6-C6H6)4H4](2+) (1(2+)) by density functional theory calculations shows a very small energy gap (0.06 eV) between the diamagnetic singlet state and the paramagnetic triplet state, as a consequence of the absence of a significant Jahn-Teller distortion in the molecular structure of 1(2+). Magnetic measurements of [1]Cl2, [1][BF4]2, and [1][PF6]2 show 1(2+) to be diamagnetic in the fundamental state, with some weak temperature-independent paramagnetism, depending upon the nature of the counterion.

Journal Article↗
PubMed2000

Monte Carlo methods in electronic structures for large systems.

Quantum Monte Carlo methods have recently made it possible to calculate the electronic structure of relatively large molecular systems with very high accuracy. These large systems range from positron complexes [NH(2),Ps] with approximately 10 electrons to C(20) isomers with 120 electrons, to silicon crystal structures of 250 atoms and 1000 valence electrons. The techniques for such calculations and a sampling of applications are reviewed.

Journal Article↗
PubMed2005

Fe(II) in different macrocycles: electronic structures and properties.

A theoretical comparative study of complexes of porphyrin (P), porphyrazine (Pz), phthalocyanine (Pc), porphycene (Pn), dibenzoporphycene (DBPn), and hemiporphyrazine (HPz) with iron (Fe) has been carried out using a density functional theory (DFT) method. The difference in the core size and shape of the macrocycle has a substantial effect on the electronic structure and properties of the overall system. The ground states of FeP and FePc were identified to be the 3A2g [(d(xy))2(d(z)2)2(d(pi))2] state, followed by 3E(g) [(d(xy))2(d(z)2)1(d(pi))3]. For FePz, however, the 3E(g)-3A2g energy gap of 0.02 eV may be too small to distinguish between the ground and excited states. When the symmetry of the macrocycle is reduced from D4h to D2h, the degeneracy of the d(pi) (d(xz), d(yz)) orbitals is removed, and the ground state becomes 3B2g [(d(xy))2(d(z)2)1(d(yz))2(d(xz))1] or 3B3g [...(d(yz))1(d(xz))2] for FePn, FeDBPn, and FeHPz. The calculations also show how the change of the macrocycle can influence the axial ligand coordination of pyridine (Py) and CO to the Fe(II) complexes. Finally, the electronic structures of the mono- and dipositive and -negative ions for all the unligated and ligated iron macrocycles were elucidated, which is important for understanding the redox properties of these compounds. The differences in the observed electrochemical (oxidation and reduction) properties between metal porphycenes (MPn) and metal porphyrins (MP) can be accounted for by the calculated results (orbital energy level diagrams, ionization potentials, and electron affinities).

Iron↗
PubMed2005

Auxiliary basis expansions for large-scale electronic structure calculations.

One way to reduce the computational cost of electronic structure calculations is to use auxiliary basis expansions to approximate four-center integrals in terms of two- and three-center integrals, usually by using the variationally optimum Coulomb metric to determine the expansion coefficients. However, the long-range decay behavior of the auxiliary basis expansion coefficients has not been characterized. We find that this decay can be surprisingly slow. Numerical experiments on linear alkanes and a toy model both show that the decay can be as slow as 1/r in the distance between the auxiliary function and the fitted charge distribution. The Coulomb metric fitting equations also involve divergent matrix elements for extended systems treated with periodic boundary conditions. An attenuated Coulomb metric that is short-range can eliminate these oddities without substantially degrading calculated relative energies. The sparsity of the fit coefficients is assessed on simple hydrocarbon molecules and shows quite early onset of linear growth in the number of significant coefficients with system size using the attenuated Coulomb metric. Hence it is possible to design linear scaling auxiliary basis methods without additional approximations to treat large systems.

Alkanes↗
PubMed2002

Ab initio study on the electronic structures of styrene in the Franck-Condon region.

The electronic structures of styrene in the Franck-Condon region have been theoretically examined by means of ab initio complete active space self-consistent field (CASSCF) and the second order multireference Møller-Plesset calculations. The optimized structure of styrene in S(0) is planar but the torsional motion of the phenyl group is very floppy. The S(1) state is assigned to the local pi-pi* excitation within the benzene ring. On the other hand, S(2), above S(1) by 0.561 eV, is assigned to a state that resembles the so-called V-state of ethylene. The transition intensity of S(0)-S(1) is weak, while that of S(0)-S(2) is strong. This is in good agreement with the experimental absorption spectrum where the S(0)-S(1) and S(0)-S(2) transitions are in the energy range of 290-220 nm. The optimized geometry of S(1), characterized by an enlarged benzene ring and its vibrational analyses, further justifies the assignment of the S(1) state.

Journal Article↗
PubMed1986

[Mechanism of the tranquilizing action of electron structural analogs of nicotinamide].

The interaction of nicotinamide and its electron structural analogs (NMF and AzN compounds) with central benzodiazepine receptor antagonist Ro 15-1788 and GABA-ergic system antagonist bicuculline were studied in a conflicting situation test. NMF and AzN behaved as the agonists of GABA-benzodiazepine receptor complex. Like in diazepam, the anxiolytic effects of benzodiazepines and nicotinamide was prevented by bicuculline and Ro 15-1788. The given compounds were shown to be more active, than nicotinamide.

Animals↗
PubMed2005

Electronic structure, excited states, and photoelectron spectra of uranium, thorium, and zirconium bis(Ketimido) complexes (C5R5)2M[-NCPh2]2 (M = Th, U, Zr; R = H, CH3).

Organometallic actinide bis(ketimide) complexes (C5Me5)2An[-N=C(Ph)(R)]2 (where R = Ph, Me, and CH2Ph) of thorium(IV) and uranium(IV) have recently been synthesized that exhibit chemical, structural, and spectroscopic (UV-Visible, resonance-enhanced Raman) evidence for unusual actinide-ligand bonding. [Da Re et al., J. Am. Chem. Soc., 2005, 127, 682; Jantunen et al., Organometallics, 2004, 23, 4682; Morris et al., Organometallics, 2004, 23, 5142.] Similar evidence has been observed for the group 4 analogue (C5H5)2Zr[-N=CPh2]2. [Da Re et al., J. Am. Chem. Soc., 2005, 127, 682.] These compounds have important implications for the development of new heavy-element systems that possess novel electronic and magnetic properties. Here, we have investigated M-ketimido bonding (M = Th, U, Zr), as well as the spectroscopic properties of the highly colored bis-ketimido complexes, using density functional theory (DFT). Photoelectron spectroscopy (PES) has been used to experimentally elucidate the ground-state electronic structure of the thorium and uranium systems. Careful examination of the ground-state electronic structure, as well as a detailed modeling of the photoelectron spectra, reveals similar bonding interactions between the thorium and uranium compounds. Using time-dependent DFT (TDDFT), we have assigned the bands in the previously reported UV-Visible spectra for (C5Me5)2Th[-N=CPh2]2, (C5Me5)2U[-N=CPh2]2, and (C5H5)2Zr[-N=CPh2]2. The low-energy transitions are attributed to ligand-localized N p --> C=N pi excitations. These excited states may be either localized on a single ketimido unit or may be of the ligand-ligand charge-transfer type. Higher-energy transitions are cyclopentadienyl pi --> CN pi or cyclopentadienyl pi --> phenyl pi in character. The lowest-energy excitation in the (C5Me5)2U[-N=Ph2]2 compound is attributed to f-f and metal-ligand charge-transfer transitions that are not available in the thorium and zirconium analogues. Geometry optimization and vibrational analysis of the lowest-energy triplet state of the zirconium and thorium compounds also aids in the assignment and understanding of the resonance-enhanced Raman data that has recently been reported. [Da Re et al., J. Am. Chem. Soc., 2005, 127, 682.].

Journal Article↗