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PubMed2004

Microbial biomass and activity on railway track and embankments.

The spatial distribution of microbial biomass and microbial activity was studied in two Swedish railway embankments (located close to Mora and Nässjö). Basal respiration and substrate-induced respiration (SIR) as well as the active (r) and dormant (K) fractions of the microbial biomass were determined in samples taken from the surface layer of the ballast. The SIR, r, K and basal respiration values were all of an overall low magnitude, but were highly variable over short distances on the track. Both the biomass and basal respiration were higher on the sides of the embankment than in the middle of the tracks. SIR, K and basal respiration were correlated to the organic matter content as measured by loss on ignition, whereas r was not. None of the parameters correlated with pH. It is proposed that organic matter content could be used as a predictor for microbial biomass in railway embankments.

Bacteria↗
PubMed2006

Near-infrared spectroscopic monitoring of biomass, glucose, ethanol and protein content in a high cell density baker's yeast fed-batch bioprocess.

The use of at-line NIRS to monitor a high cell density fed-batch baker's yeast bioprocess was investigated. Quantification of the key analytes (biomass, ethanol and glucose) and the product quality indicator (percentage protein content) was studied. Biomass was quantitatively modelled using whole matrix samples (as was percentage protein content). The dominance of the whole matrix spectrum by biomass, and its associated light scattering effects, were overcome by use of filtrate samples and adapted (semi-synthetic) filtrate samples, which allowed successful ethanol and glucose modelling, respectively. Calibrations were rigorously challenged via external validation with large sample sets relative to the calibration sample size, ensuring model robustness and potential practical utility. The standard errors of calibration for biomass, glucose, ethanol and total intracellular protein were (g/l) 1.79, 0.19, 0.79 and 0.91, respectively, comparable to those of the primary assays. The calibration strategies necessary to generate quantitative models for this range of analytes in such a complex high cell density bioprocess fluid are discussed.

Biomass↗
PubMed1999

Successful design and development of genetically engineered Saccharomyces yeasts for effective cofermentation of glucose and xylose from cellulosic biomass to fuel ethanol.

Ethanol is an effective, environmentally friendly, nonfossil, transportation biofuel that produces far less pollution than gasoline. Furthermore, ethanol can be produced from plentiful, domestically available, renewable, cellulosic biomass. However, cellulosic biomass contains two major sugars, glucose and xylose, and a major obstacle in this process is that Saccharomyces yeasts, traditionally used and still the only microorganisms currently used for large scale industrial production of ethanol from glucose, are unable to ferment xylose to ethanol. This makes the use of these safest, most effective Saccharomyces yeasts for conversion of biomass to ethanol economically unfeasible. Since 1980, scientists worldwide have actively been trying to develop genetically engineered Saccharomyces yeasts to ferment xylose. In 1993, we achieved a historic breakthrough to succeed in the development of the first genetically engineered Saccharomyces yeasts that can effectively ferment both glucose and xylose to ethanol. This was accomplished by carefully redesigning the yeast metabolic pathway for fermenting xylose to ethanol, including cloning three xylose-metabolizing genes, modifying the genetic systems controlling gene expression, changing the dynamics of the carbon flow, etc. As a result, our recombinant yeasts not only can effectively ferment both glucose and xylose to ethanol when these sugars are present separately in the medium, but also can effectively coferment both glucose and xylose present in the same medium simultaneously to ethanol. This has made it possible because we have genetically engineered the Saccharomyces yeasts as such that they are able to overcome some of the natural barrier present in all microorganisms, such as the synthesis of the xylose metabolizing enzymes not to be affected by the presence of glucose and by the absence of xylose in the medium. This first generation of genetically engineered glucose-xylose-cofermenting Saccharomyces yeasts relies on the presence of a high-copy-number 2 mu-based plasmid that contains the three cloned genetically modified xylose-metabolizing genes to provide the xylose-metabolizing capability. In 1995, we achieved another breakthrough by creating the super-stable genetically engineered glucose-xylose-cofermenting Saccharomyces yeasts which contain multiple copies of the same three xylose-metabolizing genes stably integrated on the yeast chromosome. This is another critical development which has made it possible for the genetically engineered yeasts to be effective for cofermenting glucose and xylose by continuous fermentation. It is widely believed that the successful development of the stable glucose-xylose-cofermenting Saccharomyces yeasts has made the biomass-to-ethanol technology a step much closer to commercialization. In this paper, we present an overview of our rationales and strategies as well as our methods and approaches that led to the ingenious design and successful development of our genetically engineered Saccharomyces yeasts for effective cofermentation of glucose and xylose to biofuel ethanol.

Biomass↗
PubMed2002

Food web structure in the recently flooded Sep Reservoir as inferred from phytoplankton population dynamics and living microbial biomass.

Phytoplankton dynamics, bacterial standing stocks and living microbial biomass (derived from ATP measurements, 0.7-200 mm size class) were examined in 1996 in the newly flooded (1995) Sep Reservoir ('Massif Central,' France), for evidence of the importance of the microbial food web relative to the traditional food chain. Phosphate concentrations were low, N:P ratios were high, and phosphate losses converted into carbon accounted for <50% of phytoplankton biomass and production, indicating that P was limiting phytoplankton development during the study. The observed low availability of P contrasts with the high release of "directly" assimilable P often reported in newly flooded reservoirs, suggesting that factors determining nutrient dynamics in such ecosystems are complex. The phosphate availability, but also the water column stability, seemed to be among the major factors determining phytoplankton dynamics, as (i) large-size phytoplankton species were prominent during the period of increasing water column stability, whereas small-size species dominated phytoplankton assemblages during the period of decreasing stability, and (ii) a Dinobryon divergens bloom occurred during a period when inorganic P was undetectable, coinciding with the lowest values of bacterial standing stocks. Indication of grazing limitation of bacterial populations by the mixotrophic chrysophyte D. divergens (in late spring) and by other potential grazers (mainly rotifers in summer) seemed to be confirmed by the Model II or functional slopes of the bacterial vs phytoplankton regressions, which were always <0.63. Phytoplankton biomass was not correlated with phosphorus sources and its contribution was remarkably low relative to the living microbial biomass which, in contrast, was positively correlated with total phosphorus in summer. We conclude that planktonic microheterotrophs are strongly implicated in the phosphorus dynamics in the Sep Reservoir, and thus support the idea that an important amount of matter and energy flows through the "microbial loop" and food web, shortly after the flooding of a reservoir.

Bacteria↗
PubMed2006

Optimization of critical medium components using response surface methodology for biomass and extracellular polysaccharide production by Agaricus blazei.

Response surface methodology (RSM) was applied to optimize the critical medium ingredients of Agaricus blazei. A three-level Box-Behnken factorial design was employed to determine the maximum biomass and extracellular polysaccharide (EPS) yields at optimum levels for glucose, yeast extract (YE), and peptone. A mathematical model was then developed to show the effect of each medium composition and its interactions on the production of mycelial biomass and EPS. The model predicted the maximum biomass yield of 10.86 g/l that appeared at glucose, YE, peptone of 26.3, 6.84, and 6.62 g/l, respectively, while a maximum EPS yield of 348.4 mg/l appeared at glucose, YE, peptone of 28.4, 4.96, 5.60 g/l, respectively. These predicted values were also verified by validation experiments. The excellent correlation between predicted and measured values of each model justifies the validity of both the response models. The results of bioreactor fermentation also show that the optimized culture medium enhanced both biomass (13.91 +/- 0.71 g/l) and EPS (363 +/- 4.1 mg/l) production by Agaricus blazei in a large-scale fermentation process.

Agaricus↗
PubMed1998

Organic halogen removal from chlorinated humic ground water and lake water by nitrifying fluidized-bed biomass characterised by electron microscopy and molecular methods.

The dechlorinating and genotoxicity-removing activities of nitrifying fluidized-bed reactor biomass towards chlorinated organic compounds in water were shown at level below 1 ppm. The removal rates of adsorbable organic halogens were 200 micrograms Cl (g VS day)-1 for chlorinated humic ground water and 50 micrograms Cl (g VS day)-1 for chlorinated lake water when studied in batch mode. In a sequenced batch mode the removal rates [micrograms Cl (g VS day)-1] were 2000 from chlorohumus, 1400-1800 from chlorophenols in chlorinated ground water, and 430-720 from chlorohumus in chlorinated lake water. Genotoxicity was removed to a large extent (60%-80%) from the chlorinated waters upon incubation with nitrifying reactor biomass. 2,6-Di-, 2,4,6-tri and 2,3,4,6-tetrachlorophenols competed with chlorinated water organohalogens for dechlorination. The dechlorination of chlorophenols and chlorohumus required no ammonia and was not prevented by inhibitors of ammonia oxidation, nitrapyrin, parathion, sodium diethyldithiocarbamate, or allylthiourea. Electron microscopical inspection of the biomass showed the dominance of clusters of bacteria resembling known nitrifying species, Nitrosomonas, Nitrobacter, and Nitrosospira. This was supported by polymerase chain reaction amplification of the biomass DNA with four different primers, revealing the presence of 16S rDNA sequences assignable to the same species. The most intensive band obtained with the Nitroso4E primer was shown to be closely related to Nitrosomonas europaea by restriction analysis.

Ammonia↗
PubMed2002

Impact of grazing on plant species richness, plant biomass, plant attribute, and soil physical and hydrological properties of vertisol in East African highlands.

Understanding the problems of grazing land in vertisol areas and seeking long-lasting solutions is the central point where mixed crop livestock is the second stay for the majority of the population. In order to understand this, the current study was conducted at two sites, one with 0-4% slope and the other with 4--8% slope at Ginchi watershed, 80 km west of Addis Ababa, Ethiopia. The specific objectives of the study were to quantify changes in plant species richness, biomass, plant cover, and soil physical and hydrological properties. The grazing regimes were: moderate grazing (regulated), heavy grazing (free grazing), and no grazing (closed to any grazing), which was considered the control treatment. The results showed that the biomass yield in nongrazed plots was higher than in the grazed plots. However, the biomass yield in grazed plots improved over the years. Species richness and percentage of dominant species attributes were better in medium grazed plots than the other treatments. Soil compaction was higher in very heavily grazed plots than in nongrazed and medium-grazed plots. In contrast to that, the soil water content and infiltration rate were better in nongrazed plots than in grazed plots. Soil loss in grazed plots decreased with the increase of biomass yields and as the soil was more compacted by livestock trampling during the wet season. Finally since the medium stocking rate is better in species richness and plant attributes, and lies between nongrazed and heavily grazed plots in the rest of the measured parameters, it could be the appropriate stocking rate to practice by the smallholder farmer.

Africa, Eastern↗
PubMed2002

Consequences of livestock grazing on water quality and Benthic algal biomass in a Canadian natural grassland plateau.

The effects of livestock grazing on selected riparian and stream attributes, water chemistry, and algal biomass were investigated over a two-year period using livestock enclosures and by completing stream surveys in the Cypress Hills grassland plateau, Alberta, Canada. Livestock enclosure experiments, partially replicated in three streams, comprised four treatments: (1) early season livestock grazing (June-August), (2) late season livestock grazing (August-September), (3) all season grazing (June-September), and (4) livestock absent controls. Livestock grazing significantly decreased streambank stability, biomass of riparian vegetation, and the extent to which aquatic vegetation covered the stream channels compared with livestock-absent controls. Water quality comparisons indicated significant differences among the four livestock grazing treatments in Battle and Graburn creeks but not in Nine Mile Creek. In Graburn Creek, the concentration of total phosphorus in the all-season livestock grazing treatment was significantly higher than that in the livestock-absent control, and the early season and late season grazing treatments. Concentrations of soluble reactive phosphorus in the all-season livestock grazing treatment also exceeded that in livestock-absent control. In contrast, differences in water quality variables in the remaining 22 comparisons (i.e., 22 of the total 24 comparisons) were minor even when differences were statistically significant. Effects of livestock grazing on algal biomass were variable, and there was no consistent pattern among creeks. At the watershed scale, spatial variation in algal biomass was related (P < 0.05) with concentrations of NO(2)(-) + NO(3) (-) and soluble reactive phosphorus in two of the four study creeks. Nutrient diffusing substrata experiments showed that algal communities were either nitrogen-limited or not limited by nutrients, depending on stream and season.

Alberta↗
PubMed2001

Plant community composition and biomass in Gulf Coast Chenier Plain marshes: responses to winter burning and structural marsh management.

Many marshes in the Gulf Coast Chenier Plain, USA, are managed through a combination of fall or winter burning and structural marsh management (i.e., levees and water control structures; hereafter SMM). The goals of winter burning and SMM include improvement of waterfowl and furbearer habitat, maintenance of historic isohaline lines, and creation and maintenance of emergent wetlands. Although management practices are intended to influence the plant community, effects of these practices on primary productivity have not been investigated. Marsh processes, such as vertical accretion and nutrient cycles, which depend on primary productivity may be affected directly or indirectly by winter burning or SMM. We compared Chenier Plain plant community characteristics (species composition and above- and belowground biomass) in experimentally burned and unburned control plots within impounded and unimpounded marshes at 7 months (1996), 19 months (1997), and 31 months (1998) after burning. Burning and SMM did not affect number of plant species or species composition in our experiment. For all three years combined, burned plots had higher live above-ground biomass than did unburned plots. Total above-ground and dead above-ground biomasses were reduced in burned plots for two and three years, respectively, compared to those in unburned control plots. During all three years, belowground biomass was lower in impounded than in unimpounded marshes but did not differ between burn treatments. Our results clearly indicate that current marsh management practices influence marsh primary productivity and may impact other marsh processes, such as vertical accretion, that are dependent on organic matter accumulation and decay.

Animals↗
PubMed2003

Response of NDVI, biomass, and ecosystem gas exchange to long-term warming and fertilization in wet sedge tundra.

This study explores the relationship between the normalized difference vegetation index (NDVI), aboveground plant biomass, and ecosystem C fluxes including gross ecosystem production (GEP), ecosystem respiration (ER) and net ecosystem production. We measured NDVI across long-term experimental treatments in wet sedge tundra at the Toolik Lake LTER site, in northern Alaska. Over 13 years, N and P were applied in factorial experiments (N, P and N + P), air temperature was increased using greenhouses with and without N + P fertilizer, and light intensity (photosynthetically active photon flux density) was reduced by 50% using shade cloth. Within each treatment plot, NDVI, aboveground biomass and whole-system CO(2) flux measurements were made at the same sampling points during the peak-growing season of 2001. We found that across all treatments, NDVI is correlated with aboveground biomass ( r(2)=0.84), GEP ( r(2)=0.75) and ER ( r(2)=0.71), providing a basis for linking remotely sensed NDVI to aboveground biomass and ecosystem carbon flux.

Biomass↗
PubMed2003

Biomass allocation, growth, and photosynthesis of genotypes from native and introduced ranges of the tropical shrub Clidemia hirta.

We tested the hypothesis that the tropical shrub Clidemia hirta appears more shade tolerant and is more abundant in its introduced than native range because of genetic differences in resource acquisition, allocation, and phenotypic plasticity between native and introduced genotypes. We examined growth, biomass allocation, and photosynthetic parameters of C. hirta grown in a greenhouse from seed collected from four populations in part of its native range (Costa Rica) and four populations in part of its introduced range (Hawaiian Islands). Six-month-old seedlings were placed in high (10.3-13.9 mol m(-2) day(-1)) or low (1.4-4.5 mol m(-2) day(-1)) light treatments and grown for an additional 6 months. Our study provided little evidence that Hawaiian genotypes of C. hirta differed genetically from Costa Rican genotypes in ways that would contribute to differences in habitat distribution or abundance. Some of the genetic differences that were apparent, such as greater allocation to stems and leaf area relative to whole plant biomass in Costa Rican genotypes and greater allocation to roots in Hawaiian genotypes, were contrary to predictions that genotypes from the introduced range would allocate more biomass to growth and less to storage than those from the native range. Hawaiian and Costa Rican genotypes displayed no significant differences in relative growth rates, maximal photosynthetic rates, or specific leaf areas in either light treatment. In the high light environment, however, Hawaiian genotypes allocated more biomass to reproductive parts than Costa Rican genotypes. Phenotypic plasticity for only 1 of 12 morphological and photosynthetic variables was greater for Hawaiian than Costa Rican genotypes. We conclude that genetic shifts in resource use, resource allocation, or plasticity do not contribute to differences in habitat distribution and abundance between the native and introduced ranges of C. hirta.

Biomass↗
PubMed2005

Shifts in caterpillar biomass phenology due to climate change and its impact on the breeding biology of an insectivorous bird.

Timing of reproduction has major fitness consequences, which can only be understood when the phenology of the food for the offspring is quantified. For insectivorous birds, like great tits (Parus major), synchronisation of their offspring needs and abundance of caterpillars is the main selection pressure. We measured caterpillar biomass over a 20-year period and showed that the annual peak date is correlated with temperatures from 8 March to 17 May. Laying dates also correlate with temperatures, but over an earlier period (16 March-20 April). However, as we would predict from a reliable cue used by birds to time their reproduction, also the food peak correlates with these temperatures. Moreover, the slopes of the phenology of the birds and caterpillar biomass, when regressed against the temperatures in this earlier period, do not differ. The major difference is that due to climate change, the relationship between the timing of the food peak and the temperatures over the 16 March-20 April period is changing, while this is not so for great tit laying dates. As a consequence, the synchrony between offspring needs and the caterpillar biomass has been disrupted in the recent warm decades. This may have severe consequences as we show that both the number of fledglings as well as their fledging weight is affected by this synchrony. We use the descriptive models for both the caterpillar biomass peak as for the great tit laying dates to predict shifts in caterpillar and bird phenology 2005-2100, using an IPCC climate scenario. The birds will start breeding earlier and this advancement is predicted to be at the same rate as the advancement of the food peak, and hence they will not reduce the amount of the current mistiming of about 10 days.

Animals↗
PubMed2004

Biomass production of yeast isolate from salad oil manufacturing wastewater.

Conversion of oil-rich salad oil manufacturing wastewater (SOMW) into protein source for animal feed through biomass production of yeast isolate was investigated in this study. Five species of yeasts, including Rhodotorula rubra, Candida tropicalis, C. utilis, C. boidinii, Trichosporon cutaneum, were isolated from SOMW following enrichment culture. Of them, C. utilis was chosen as the sole biomass producer in the study due to its greatest oil uptake rate, 0.96 kg oil kg(-1) biomass d(-1), and highest specific growth rate, 0.25 h(-1). The cells of C. utilis contained 26% protein, 9% crude lipid, 55% carbohydrate and balanced amino acid compositions. The initial N:C ratio in SOMW drastically influenced oil reduction efficiency, biomass production and protein content of C. utilis, and therefore a range between 1:6 and 1:8 was recommended in consideration of these three factors simultaneously.

Amino Acids↗
PubMed2005

Comparison of growth, biomass and nutrient distribution in five promising clones of Populus deltoides under an agrisilviculture system.

Variations in growth, above- and below-ground biomass and nutrient distribution were examined in five clones (G3, G48, 65/27, D121 and S7C1) of Populus deltoides grown under agrisilviculture system in sub-humid tropics of Central India. The monoclonal blocks were planted at 4x5 m in a randomized block design with three replications. Diameter at breast height (dbh) and tree height were consistently higher in clone 65/27 and lowest in clone S7C1. Mean annual increments (MAI) in dbh and height were 1.6 and 1.3 times higher in clone 65/27 compared to clone S7C1. Total biomass varied from 48.5 to 62.2 Mg ha(-1) in six-year-old clones. In rank order, the total biomass of clones was: 65/27>D121>G48>G3>S7C1. Stem wood accounted 60.4-68.9% to total biomass followed by coarse roots (12.2-18.9%), branches (12.3-15%), leaves (3.02-6.9%) and fine roots (1.5-2.7%). Root-shoot ratio ranged from 0.2 to 0.35. It was highest in clone G48 and lowest in clone S7C1. In six-year-old clones, total N ranged from 184.3 to 266.3 kg ha(-1), P from 16.8 to 31.1 kg ha(-1) and K from 81.9 to 128.7 kg ha(-1). Total N and P were highest in clone 65/27, while K in clone G48. Nutrients were lowest in clone S7C1. In general, maximum nutrients (N, P and K) were allocated to above-ground components (leaves>stem>branches) than below-ground components. Available N, P and K in the soil improved significantly after six years of planting. It was higher in 0-20 cm and decreased with soil depth. At 0-20 cm soil depth, N increased from 14.9% to 24.1%, P from 17.2% to 23.3% and K from 3.1% to 5.1% under different clones. The yield of both soybean and wheat reduced under poplar clones. Yield losses in soybean ranged from 10.1% to 33% and wheat from 15% to 30.3% under different clones. The management strategies for reducing tree-crop competition and nutrient export from the site under P. deltoides based agrisilviculture system for achieving sustainable production are discussed.

Agriculture↗
PubMed2005

Willow growth in response to nutrients and moisture on a clay landfill cap soil. I. Growth and biomass production.

The growth and biomass production by willow (Salix viminalis L.) was studied in lysimeters containing Oxford clay landfill cap soil with different amendments, bulk densities and watering regimes. Three years from planting, stem biomass in well-watered plants was least (0.28 kg plant(-1)) with high bulk density soil (1480 kg m(-3)) and no nutritional amendment but was increased 10-fold (2.53 kg plant(-1)) by reducing soil bulk density (1200 kg m3) and adding amendments. In comparison, on a sandy loam soil it was 6.23 kg plant(-1). There were similar differences in number of stems plant(-1), stem basal area plant(-1) and plant leaf area which can be attributed to low nitrogen and phosphorus levels in Oxford clay. Water stress reduced stem biomass production by 26-37% and caused higher root:stem ratios. These were also higher on Oxford clay than on the sandy loam. Successful biomass production from willow on Oxford clay landfill caps will therefore require nutritional amendment.

Biomass↗
PubMed2005

Superheated steam pyrolysis of biomass elemental components and Sugi (Japanese cedar) for fuels and chemicals.

To develop a novel noncatalytic biomass refinery process that can be used as a portable process, superheated steam pyrolysis was investigated to produce both carbonized solid fuels and chemicals using a large-scale reactor. Individual biomass components and native biomass (Sugi, Japanese cedar) were pyrolyzed. Between 150 and 400 degrees C, the vaporizing fractions of cellulose, xylan, and kraft lignin were summarized using a numerical model. Cellulose was converted to glycolaldehyde, furfural, 5-hydroxymethyl furfural and levoglucosan, whereas xylan was converted to glycolaldehyde, furfural, and acetic acid. Kraft lignin produced a slight yield of phenol and guaiacol. The total vaporization fraction of Sugi and its vaporizing rate were explained sufficiently using a numerical model based on the weighted average of the vaporizing properties of the individual components. However, the yields of phenol, guaiacol, and acetic acid were underestimated, while the yields of furfurals and levoglucosan were overestimated. Possible synergetic effects among chemicals in the superheated steam pyrolysis of native biomass were also discussed.

Biomass↗
PubMed2006

Production of biomass and nutraceutical compounds by Spirulina platensis under different temperature and nitrogen regimes.

The cyanobacterium Spirulina platensis has been used by humans because of its nutritional and possibly medicinal effects. Our study evaluated the influence of temperature and nitrogen concentration in the medium on the production of biomass by this cyanobacterium and the biomass composition in protein, lipid and phenolic compounds. We found that at 35 degrees C there was a negative effect on biomass production but a positive effect on the production of protein, lipids and phenolics, the highest levels of these compounds being obtained in Zarrouk's medium containing 1.875 or 2.500 g l(-1) sodium nitrate. Higher biomass densities and productivity were obtained at 30 degrees C than at 35 degrees C, but nitrogen concentration appeared to have no effect on the amount of protein, lipid or phenolics, indicating that at 30 degrees C the concentration of sodium nitrate in Zarrouk's medium (2.50 g l(-1)) can be reduced without loss of productivity, an important cost-saving factor in large-scale cultivation.

Acids, Carbocyclic↗
PubMed2006

Potential for hydrogen and methane production from biomass residues in Canada.

Canada generates approximately 1.45 x 10(8)t of residual biomass per year, containing an estimated energy value of 2.28 x 10(9)GJ, which is equivalent to about 22% of Canada's current annual energy use. Anaerobic digestion of these biomass residues using conventional technologies could generate 1.14 x 10(10)m(3)/year of CH(4) with a heating value of 4.56 x 10(8)GJ. Conversion of these residues using emerging technologies that favor the synthesis of H(2) and represses the synthesis of CH(4) could generate 1.47 x 10(10)m(3)/year renewable H(2), with a heating value of 1.89 x 10(8)GJ. While CH(4)-production results in a larger amount of energy recovery, generating H(2) from waste biomass is a renewable alternative that could fuel the hydrogen economy. Additional research to further both the technical and commercial development of microbial bio-energy from biomass is warranted.

Biomass↗