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At least 307 records · Page 17Linked to original sources

Role of pump diffraction on the stability of localized structures in degenerate optical parametric oscillators.

We show that the stability range of localized structures (LS's) in the form of minimum size phase domains in degenerate optical parametric oscillators is enhanced by increasing the diffraction of the pump wave. Pump diffraction enhances spatial oscillations of decaying tails of domain boundaries, whereas spatially oscillating (weakly decaying) tails prevent the collapse of LS's, enhance their stability range, and allow the existence of more complex LS's in the form of molecules.

Journal Article↗

Nuclear import of cubitus interruptus is regulated by hedgehog via a mechanism distinct from Ci stabilization and Ci activation.

The Hedgehog (Hh) signal is transduced via Cubitus interruptus (Ci) to specify cell fates in the Drosophila wing. In the absence of Hh, the 155 kDa full-length form of Ci is cleaved into a 75 kDa repressor. Hh inhibits the proteolysis of full-length Ci and facilitates its conversion into an activator. Recently, it has been suggested that Hh promotes Ci nuclear import in tissue culture cells. We have studied the mechanism of Ci nuclear import in vivo and the relationship between nuclear import, stabilization and activation. We found that Ci rapidly translocates to the nucleus in cells close to the anteroposterior (AP) boundary and this rapid nuclear import requires Hh signaling. The nuclear import of Ci is regulated by Hh even under conditions in which Ci is fully stabilized. Furthermore, cells that exhibit Ci stabilization and rapid nuclear import do not necessarily exhibit maximal Ci activity. It has been previously shown that stabilization does not suffice for activation. Consistent with this finding, our results suggest that the mechanisms regulating nuclear import, stabilization and activation are distinct from each other. Finally, we show that cos2 and pka, two molecules that have been characterized primarily as negative regulators of Ci activity, also have positive roles in the activation of Ci in response to Hh.

Animals↗

Flow cytometry study of human cyclin B1 and cyclin E expression in leukemic cell lines: cell cycle kinetics and cell localization.

Experiments by flow cytometry (FCM) after nuclei isolation have never been done to investigate cyclins. We have conducted different experiments by FCM using whole cells and isolated nuclei to study the immunolocalization and kinetic patterns of cyclin B1 and cyclin E in various leukemic cell lines. During asynchronous growth, all whole cells had a scheduled, cell cycle phase-restricted expression of cyclin B1. By using a washless immunostaining of unfixed nuclei, cyclin B1 was detected in all cell cycle phases, including G1, although to a lesser extent than in G2/M, suggesting that in whole cells the cyclin B1 epitope is masked and accessible only in isolated nuclei. When the cells were synchronized at the G1/S boundary by thymidine or in the G1 phase by sodium n-butyrate, an identical accumulation of cyclin B1 was observed. As for cyclin E, its expression was higher with thymidine treatment than with sodium n-butyrate, particularly in nuclei. The elevated cyclin B1 level in the cells arrested at the G1/S boundary may reflect the increased half-life of this protein stabilized as the result of cyclin E overexpression. However, our FCM data also support the notion that accumulation of human cyclin B1 in leukemic cell lines begins during the G1 phase of the cell cycle, probably in the nucleus. The detection of cyclin B1 by Western blot in cells sorted in the G1 phase of the cell cycle confirms this finding. It is possible, therefore, that tumor transformation or leukemic phenotype may invariably be associated with altered cyclin B1 expression.

Blotting, Western↗

Enhanced continua and discrete lattices for modelling granular assemblies.

This article discusses the derivation of continuum models that can be used for modelling the inhomogeneous mechanical behaviour of granular assemblies. These so-called kinematically enhanced models are of the strain-gradient type and of the strain-gradient micro-polar type, and are derived by means of homogenizing the micro-structural interactions between discrete particles. By analysis of the body wave dispersion curves, the enhanced continuum models are compared to corresponding discrete lattice models. Accordingly, it can be examined up to which deformation level the continuum models are able to accurately describe the discrete particle behaviour. Further, the boundary conditions for the enhanced continuum models are formulated, and their stability is considered. It is demonstrated how to use the body wave dispersion relations for the assessment of stability.

Journal Article↗

Global dynamics and stochastic resonance of the forced FitzHugh-Nagumo neuron model.

We have analyzed the responses of an excitable FitzHugh-Nagumo neuron model to a weak periodic signal with and without noise. In contrast to previous studies which have dealt with stochastic resonance in the excitable model when the model with periodic input has only one stable attractor, we have focused our attention on the relationship between the global dynamics of the forced excitable neuron model and stochastic resonance. Our results show that for some parameters the forced FitzHugh-Nagumo neuron model has two attractors: the small-amplitude subthreshold periodic oscillation and the large-amplitude suprathreshold periodic oscillation. Random transitions between these two periodic oscillations are the essential mechanism underlying stochastic resonance in this model. Differences of such stochastic resonance to that in a classical bistable system and the excitable system are discussed. We also report that the state of the basin of attraction has a significant effect on the stability of neuronal firings, in the sense that the fractal basin boundary of the system enhances the noise-induced transitions.

Action Potentials↗

Stability of one-dimensional array solitons.

The array soliton stability in the discrete nonlinear Schrödinger equation with dispersion for periodic boundary conditions is studied. The linear growth rate dependence on the discrete wave number and soliton amplitude is calculated from the linearized eigenvalue problem using the variational method. In addition, the eigenvalue problem is solved numerically by shooting method and a good agreement with the analytical results is found. It is proved numerically that the results for the instability threshold for the circular array coincides with the quasicollapse threshold for the case of open arrays with initial pulses in a form of array solitons.

Journal Article↗

Pattern of breakdown of laminar flow into turbulent spots.

The breakdown into turbulent spots is the least understood stage of the laminar-turbulent transition process. With cellular-automaton stochastic simulations and stability analysis, we show that the pattern of breakdown in boundary-layer flow bears a connection to laminar instability and may be reconstructed using macroscopic properties of the transition zone, such as persistence times and transitional intermittency. We propose experimental tests of our ideas.

Journal Article↗

[Contemporary family systems--developments, problems, and possibilities].

Contemporary forms of family life and their development are described. The thesis of the pluralism of family types as a historical new phenomenon is critically reviewed, with special consideration of the relationship between family life and working world. An increasing move away from the "fordistic model" of family life took place during the last two decades towards the "multilocal multigenerational family". This development is, among others, due to the increased life expectancy and the change in the population structure. Simultaneous to this the boundaries between family and working world become more permeable. If the stability of employments decreases and the mobility of employees increases in a large scale, is discussed controversely. For an increasing number of families it becomes more and more difficult to make flexibility at work compatible with security for the children or to cope with the consequences of unemployment.

Child↗

Differential scanning calorimetric and theoretical studies of ColE1 DNA.

The differential scanning calorimetry (DSC) of plasmid ColE1 DNA was carried out. The DSC curve under the solvent condition of 1.0 X SSC buffer gave eleven clear peaks over the temperature range of 83 to 98 degrees C. The DSC curves obtained here were essentially in good agreement with the optical melting curves of ColE1 DNA reported previously. The theoretical melting profiles of ColE1 DNA calculated from its entire nucleotide sequence showed a good agreement with the DSC curves. The theoretical analysis made by constructing the thermal stability map showed that there was the positional correlation between the boundaries of the cooperatively melting regions and the ends of the protein coding regions of genes of ColE1. It was shown that the helix-coil transition of many of the small genes had a single cooperatively melting region. However, the large genes such as cea and mob3 had two or more cooperatively melting regions. It was suggested that this is closely related to the domain structures of the proteins encoded by such genes.

Calorimetry, Differential Scanning↗

Growth imbalance and altered expression of cyclins B1, A, E, and D3 in MOLT-4 cells synchronized in the cell cycle by inhibitors of DNA replication.

Expression of cyclins at the translational level is generally studied by immunoblotting lysates of cells synchronized in the cycle. Most methods used to synchronize transformed cells induce growth imbalance. The aim of the present study was to analyze levels of cyclins B1, A, E, and D3 in the respective phases of the cycle in synchronized human leukemic MOLT-4 cells, correlate them with total cellular protein content (reflecting growth imbalance), and compare the synchronized cells with cells from unperturbed, asynchronous cultures. Expression of cyclins detected immunocytochemically in individual permeabilized cells was analyzed by multiparameter flow cytometry, which made it possible to relate position of the cell in the cell cycle with cyclin expression. Cells synchronized at the G1-S boundary by thymidine, mimosine, or aphidicolin had about 40% increased total protein and 4-5 fold higher levels of cyclins E and B1 compared to their G1 counterparts from unperturbed cultures. Expression of cyclin A in synchronized cells was 2-fold higher, while expression of cyclin D3 was essentially unaltered. The synchronized cells traversing S phase after release from the block had elevated but decreasing levels of cyclins E, B1, and A. Although the cyclin expression of cells reentering G1 was similar to that of their counterparts from asynchronous cultures, the total protein content was still elevated by about 30%. The data indicate that due to different degrees of imbalance in total protein and individual cyclin content, levels of cyclins detected by immunoblotting of cell lysates from synchronized cultures may not be representative of their expression in unperturbed cells. The elevated level of cyclin B1 in the cells arrested at the G1-S boundary may reflect the increased half-life of this protein, stabilized as the result of the overexpression of cyclin E.

Cell Cycle↗

Membrane inclusions as coupled harmonic oscillators: effects due to anisotropic membrane slope relaxation.

Membrane-mediated interaction between membrane-spanning peptides or protein segments plays an important role in their function and stability. Our rigorous "coupled harmonic oscillators" representation is extended to account for the complex boundary conditions permitting anisotropic relaxation of the membrane slope along the contours of the inclusions. Using this representation and applying a highly efficient finite-difference algorithm, we have analyzed the membrane-mediated interaction triggered by deformation of the hydrophobic tails of lipid molecules to match the lipophilic exterior of the inserted peptide. We establish that anisotropic relaxation crucially affects the interaction energy, leading to a short-range attraction between two inclusions, while conventional isotropic boundary conditions result in their strong repulsion. In a multi-inclusion cluster, this attraction is further enhanced and modified due to nonpairwise interactions. The results for dimyristoyl phosphatidylcholine and glyceryl monooleate membranes are compared, and the effects of the inclusion radius are considered. The possible role of slope relaxation in the reported stabilization of linked gramicidin channels and in proteins' functional cooperativity is outlined.

Algorithms↗

Genetic information and ecosystem health: arguments for the application of chaos theory to identify boundary conditions for ecosystem management.

To meet the demands for goods and services of an exponentially growing human population, global ecosystems will come under increasing human management. The hallmark of successful ecosystem management will be long-term ecosystem stability. Ecosystems and the genetic information and processes which underlie interactions of organisms with the environment in populations and communities exhibit behaviors which have nonlinear characteristics. Nonlinear mathematical formulations describing deterministic chaos have been used successfully to model such systems in physics, chemistry, economics, physiology, and epidemiology. This approach can be extended to ecotoxicology and can be used to investigate how changes in genetic information determine the behavior of populations and communities. This article seeks to provide the arguments for such an approach and to give initial direction to the search for the boundary conditions within which lies ecosystem stability. The identification of a theoretical framework for ecotoxicology and the parameters which drive the underlying model is a critical component in the formulation of a prioritized research agenda and appropriate ecosystem management policy and regulation.

Ecosystem↗

Stability of biphasic vesicles with membrane embedded proteins.

The basic physical properties of homogeneous membranes are relatively well known, while the effects of inhomogeneities with membranes are very much an active field of study. In this paper, a biphasic lipid vesicle with membrane embedded proteins is investigated. To take into account the influences of the proteins, a simple phenomenological coupling between the local fraction of proteins and the mean curvature square is suggested. By minimizing the energy of system, the E-L equations and boundary conditions are obtained and solved analytically for vesicle with a simple shape. Besides, stability phase diagrams and stability factor are put forward by linear perturbation analysis. Our results show two different situations which are strongly dependent on the nature of the proteins: a regime of easy instability when the proteins are strongly coupled to the membrane and a regime of difficult instability.

Lipid Bilayers↗

Computer simulation of macroion layering in a wedge film.

The layering of macroions confined to a wedge slit formed by two uncharged hard walls is studied using a canonical Monte Carlo method combined with a simulation cell that contains both wedge-shaped slit and bath regions. The macroion solution is modeled within a one-component fluid approach that in an effective way incorporates the double layer repulsion due to simple electrolyte ions as well as the discrete nature of an aqueous solvent. The layer formation under a wedge confinement is analyzed by carrying out separate simulation runs for a set of consecutive wedge segments designed to represent a single wedge slit. As the wedge thickness progressively increases, the sequence of regions along the wedge film with distinct features of macroion layering has been established. This sequence comprises (i) a wedge region of the thickness smaller than the macroion diameter that is free of macroions; (ii) a region with a one-dimensional macroion chain along the wedge corner at a wedge thickness of a one macroion diameter; (iii) a region comprising a low-ordered macroion monolayer that extends until the wedge thickness slightly above two macroion diameters; (iv) a region comprising a pair of well-defined two-dimensional configurations of macroions segregated on each of the wedge walls; and (v) a free-of-macroions wedge region between two surface monolayers that now originates from an electrostatic repulsion imposed by the surface macroions, which is followed by (vi) a well-defined macroion monolayer film between two surface monolayers, a less defined bilayer film, a three-layer film, and so on up to the bulk solution. Once formed, the macroion surface monolayers persist for all remaining wedge thicknesses up to the bulk, forming in such a way effective charged wedge boundaries. Such a formation of the macroion surface monolayers on the uncharged confining walls is related to the haloing mechanism for regulating the stability in colloidal suspensions [Tohver et al. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 8951] and is discussed as well. Finally, the estimated boundary of the free of macroion region between surface monolayers correlates well with the location of the boundary of the so-called "vacuum" phase that has been observed experimentally in an aqueous suspension of charged polystyrene spheres bounded by electrostatically repulsive glass walls [Pieransky et al. Phys. Rev. Lett. 1983, 50, 900].

Adsorption↗

Sequence-determined DNA separations.

The variation in electrophoretic mobility of DNA under conditions of marginal helix stability provides a useful means for investigation of the relation between the helix-random chain transition and base sequence in natural DNA and a powerful procedure for separation of DNA molecules according to sequence. The use of statistical mechanical theory for analysis of the transition equilibria together with new, simplified theoretical considerations on the effect of strand unravelling on mobility have shown that the gel behavior is predictable for known sequences. A number of the distinctive consequences of the theory and their correspondence with the properties of real molecules have been demonstrated. These include the extremely close cooperative linkage of large blocks of bases into domains, the existence of sharp boundaries between domains, the major role of nearest-neighbor interaction in determining stability, the dependence of domain structures on neighboring and more remote sequences, and the depression of domain melting temperature if the sequence lies at the end of a molecule. New and unusual applications derive from the possibility of separating DNA molecules by properties of their sequence. Exceedingly complex mixtures, such as the sum of all fragments produced by the action of a sixbase specific restriction endonuclease on a complete bacterial genome, can be resolved completely. Additional inserted sequences are easily discerned. The difference of a single base pair in a molecule permits detection and isolation of mutant sequences. The need for full sequential analysis of long molecules for characterization of mutants can be reduced by localizing a change within a small fragment.

Bacteriophage lambda↗

Entropy-driven instability and rupture of fluid membranes.

A computer simulation is used to investigate hole formation in a model membrane. The model parameters are the stress applied to the membrane, and the edge energy per unit length along the hole boundary (edge tension). Even at zero stress, the membrane has an entropically driven instability against hole formation. Within the model, the minimum edge tension required for the stability of a typical biological membrane is in the region of 1 x 10(-11) J/m, which is similar to the edge tension obtained in many measurements of biomembranes. At the zero-stress instability threshold, the hole shape is the same as a self-avoiding ring, but under compression, the hole shape assumes a branched polymer form. In the presence of large holes at zero stress, the membrane itself behaves like a branched polymer. The boundaries of the phase diagram for membrane stability are obtained, and general features of the rate of membrane rupture under stress are investigated. A model in which the entropy of hole formation is proportional to the hole perimeter is used to interpret the simulation results at small stress near the instability threshold.

Biomechanical Phenomena↗

Asymmetrically modified silica particles: a simple particulate surfactant for stabilization of oil droplets in water.

Spherical silica particles that are able to assemble at a phase boundary of a dual-phase mixture of water and an immiscible organic solvent were prepared by a partial modification of their surface hydroxyl groups with an alkylsilylation agent. Scanning electron microscopic observation of these particles in which their remaining surface hydroxyl groups had been selectively modified with colloidal gold particles revealed that each particle has an asymmetric surface structure: one side of the surface is hydrophilic and the other is hydrophobic. We found that these particles could form a micellar structure in water in the presence of an organic solution of a toluene/polystyrene mixture. The micellar structure was evidenced by formation of golf-ball-like polystyrene particles with dimples imprinting morphologies of the hydrophobic part of modified silica particles.

Journal Article↗

Adsorption of Beta-Blockers onto Poly(isobutylcyanoacrylate) Nanoparticles: Adsorption Model and Dielectric Interpretation

The objective of this report is to understand the boundary mechanism of a model drug, propranolol hydrochloride, onto poly(isobutylcyanoacrylate) nanoparticles stabilized with a mixture of dextran and dextran sulfate, and to explain the similarity between depletion isotherms and the curves obtained with the dielectric method. The dramatic influence of the sulfate groups has been demonstrated by the dosage of the dextran sulfate in the bulk aqueous medium as well as by the interpretation of the propranolol hydrochloride adsorption isotherm. Due to its sulfate groups, dextran sulfate is able to bind to propranolol hydrochloride by an ion exchange process and the resulting complex moves toward the nanoparticle surface. It is the first time that such a model is proposed. In addition, this model supports and explains the dielectric answer: indeed, we had demonstrated that the dielectric method makes it possible to determine the amount of drug loaded onto the nanoparticles, without any ultracentrifugation or assay of the drug. Finally, the application field of the dielectric method may be enlarged to other areas such as ionic resins.

Journal Article↗