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At least 307 records · Page 17Linked to original sources
PubMed1984

DNAGEL: a computer program for determining DNA fragment sizes using a small computer equipped with a graphics tablet.

The program DNAGEL is used to determine the size of DNA fragments run on agarose or polyacrylamide gels. The positions of the bands are read from gel photographs by means of a digitizer. Standard curves are calculated by the method of Southern (1979). The bands, as they are measured, are reproduced on the screen so that erroneous input can be recognized and corrected immediately. Similarly the estimated fragment sizes are printed in a table in the same relative positions as the bands on the gel. This makes it especially easy to relate fragment sizes with the bands on the gel picture. As an additional function the calculated positions of bands can be displayed on the screen. The program DNAGEL is written in APPLESOFT BASIC, suitable for APPLE II computers with 48K memory connected to a monitor, printer and a HOUSTON graphics tablet.

Base Sequence↗
PubMed1979

Computer programs to implement retinal models.

To implement retinal models of some complexity a set of computer programs, coordinated by a main program is required. A set of said programs is presented here which permits the design and the experimentation with linear and non-linear retinal layered models. A main program, called RETINA, is the basis for the building of a model, the generation of the input stimuli and the experimentation with the overall system.

Computers↗
PubMed1986

Computer editing of morphometric data on nerve fibers. An improved computer program.

A short guide is given for the planning of nerve fiber morphometry using computer-assisted methods. A new computer program is introduced which allows, among other factors, correction for myelin sheath shrinkage. If myelin shrinkage is not corrected for, there will be false high values for axon caliber and false low values for sheath thickness. The magnitude of the skew produced by this factor is shown on hand from computer editing.

Animals↗
PubMed1987

DSLINK: a computer program for gene-centromere linkage analysis in families with a trisomic offspring.

Trisomic individuals provide information for gene-centromere mapping, since two of the four chromatids in a meiotic tetrad can be recovered. When centromeric markers are available, linkage analysis between the centromere and any marker locus can be performed in nuclear families having one or more trisomic offspring. Since conventional linkage programs consider only disomic individuals, we have written a FORTRAN computer program, DSLINK, that performs gene-centromere linkage analysis on the basis of information on trisomic and disomic offspring. This program makes it possible to study the relationship between recombination and chromosome segregation.

Centromere↗
PubMed1994

A PC-based computer program for quality assessment of INAA results of emission and air particulate samples.

A PC-based computer program for quality assessment (QAS) of results obtained by neutron activation analysis (NAA) is described. Program QAS is designed for the quality assurance system based on a routine use of certified reference materials (CRMs) with similar matrix composition as the samples analyzed together with each sample batch. The results obtained for CRMs samples are then compared with certified (true) values and with the results obtained for particular CRM in previous analysis runs. Five various tests are applied to check the quality of NAA results (for CRM and, consequently, for real samples) obtained for a particular analysis run. Control charts for elemental concentrations found in CRM and ranges of results for duplicate aliquots of CRM are displayed to visualize possible discrepancies. The program accepts files transported from gamma-ray spectrometric system ND 683 (based on a PDP 11 computer), extracts and stores reference material results, and prepares a work spreadsheet for each set of results to avoid typist and other kinds of errors.

Air Pollution↗
PubMed1992

[A computer program to retrieve and record ISTAT codes related to pediatric diagnosis].

The paper describes a computer program that retrieves ISTAT codes increasing the efficiency of the retrieving time spent with traditional methods storing the obtained information in a suitable data-base, which may be lately explored by means of commercial programs. To increase the detail of the stored data, many of the official codes have been expanded with an extra character. Some results obtained from an experience conducted at the Pediatric Division of Crema Hospital are also reported.

Age Factors↗
PubMed1986

The accuracy of a Bayesian computer program for diagnosis and teaching in acute abdominal pain of childhood.

The use of a computer program for diagnosing acute abdominal pain in children using Bayes' theorem is described and the results of a one-year trial are analysed in order to qualify and quantify the accuracy of the system and to suggest some of the educational benefits that might be obtained. A means of feedback to medical students is described which can localise their weaknesses based on their experiences of real patients and could be used by educators to measure the effectiveness of their courses and the major areas of difficulty being encountered by the students. The computer has in this instance achieved a remarkable degree of accuracy in view of several factors acting against it. Such experience is very encouraging for further endeavour in this area.

Abdomen, Acute↗
PubMed2000

A computer program for sequencing and presenting complex sounds for auditory neuroimaging studies.

This paper describes a computer program, named ASAP (audio sequencing and presentation), that runs on IBM PC compatible hardware with a Microsoft Windows operating system and has been specially designed for facilitating auditory neuroimaging studies. The program's main characteristics are: (1) the ability to generate sequences of complex sounds; (2) an easy-to-use, graphical user interface; (3) full compatibility with Microsoft Windows 95 or later and Windows NT version 4.0 or later software; (4) precise timing of selected sound sequences; (5) the capability of triggering other devices; (6) the capability of being triggered to deliver stimuli; (7) support for both monotic and dichotic sound sequences; and (8) rudimentary support for the simultaneous presentation of pictures/text and sound.

Acoustic Stimulation↗
PubMed1981

A computer program for determining Vmax from the uncalibrated left ventricular pressure signal and its first derivative.

A computer program was developed to simplify the conventional method for determining the maximal contractile element shortening velocity at zero load (Vmax) by analysis of pressure-velocity graphs during the isovolumic contraction period. From an uncalibrated left ventricular (LV) pressure signal and its first derivative (dP/dt), the graph relating developed LV pressure (Pd) to the corresponding instantaneous value of (dP/dt)/28 Pd was constructed by the computer. The segment of the graph that encompassed approximately the second half of the isovolumic contraction period, as determined by analysis of the dP/dt waveform, was then extrapolated to provide V'max on the ordinate. This V'max was compared with the conventional Vmax obtained from calibrated LV and aortic pressure signals. In 5 dogs both in the control state and during inotropic (epinephrine, propranolol) and noninotropic interventions (phenylephrine or dextran infusion), a high degree of correlation was found relating V'max and Vmax both derived by either linear (Vmax = 0.91 V'max + 0.14; r = 0.933; P less than 0.001) or exponential (Vmax = 0.99 V'max - 0.06; r = 0.959; P less than 0.001) extrapolation of the pressure-velocity graph to zero load. By use of this program, Vmax can be easily and reliably estimated from the uncalibrated LV pressure signal and its first derivative.

Animals↗
PubMed1975

A computer program for analysis of dental caries data.

This paper describes the basic principles underlying the development of a computer program for the analyses of dental caries data. A data structure is described which is based on a definition of each tooth or tooth surface in the dentition, using a multi-dimensional co-ordinate system. The basic process for the computer to perform is to count the number of locations which fulfill certain predefined criteria. Programs developed according to these principles will yield exactly the output the individual user is asking for, no more and no less.

Computers↗
PubMed1987

A computer program for morphometry of circular and elliptical profiles on the microscope.

We describe a short computer program, which is written in Pascal language, to measure the diameter of circular and elliptical profiles in sections. Coordinate pairs on the microscope stage, corresponding to two or three points of a profile, are input to obtain its diameter. The program enables one to take measurements directly on the microscope, thereby reducing photographic work and caliper measurement. While the program is largely designed for electron microscopy, it also may be useful for light microscopy morphometry.

Animals↗
PubMed1992

The computer program LUDI: a new method for the de novo design of enzyme inhibitors.

A new computer program is described, which positions small molecules into clefts of protein structures (e.g. an active site of an enzyme) in such a way that hydrogen bonds can be formed with the enzyme and hydrophobic pockets are filled with hydrophobic groups. The program works in three steps. First it calculates interaction sites, which are discrete positions in space suitable to form hydrogen bonds or to fill a hydrophobic pocket. The interaction sites are derived from distributions of nonbonded contacts generated by a search through the Cambridge Structural Database. An alternative route to generate the interaction sites is the use of rules. The second step is the fit of molecular fragments onto the interaction sites. Currently we use a library of 600 fragments for the fitting. The final step in the present program is the connection of some or all of the fitted fragments to a single molecule. This is done by bridge fragments. Applications are presented for the crystal packing of benzoic acid and the enzymes dihydrofolate reductase and trypsin.

Algorithms↗
PubMed1992

A 1H NMR database computer program for the analysis of the primary structure of complex carbohydrates.

A 1H NMR database computer program has been developed to determine the primary structure of complex carbohydrates. The database contains carbohydrate structures, their corresponding 1H NMR data, and literature references. From an input list of chemical shift values, the program generates an output list of partially or completely matching carbohydrate structures. In order to facilitate the recognition of the matching part of the selected carbohydrate structures, these structures are displayed with the matching structural elements highlighted. This new 1H NMR database, together with the search program described, now provides a fast access to the published 1H NMR data of complex carbohydrates and furnishes easy links to carbohydrate structures. The performance of the program is demonstrated by the analysis of five carbohydrate fractions prepared from a pool of horse serum glycoproteins.

Carbohydrate Conformation↗
PubMedDate not supplied

A computer program for the statistical analysis of disease prevalence data from survival/sacrifice experiments.

This paper presents a computer program for analyzing disease prevalence data from animal survival experiments in which there may also be some serial sacrifice. The method has been described in Biometrics 35 (1979) 221-234. The user is interrogated about the details of particular models he wishes to fit. Then a generalized EM algorithm is used to compute maximum likelihood estimates of various quantities of interest concerning the effects of treatment, time and presence of other diseases on the prevalences and lethalities of specific diseases of interest.

Animals↗
PubMed1985

A simple, low-cost computer program for Scatchard plot analysis of binding data in steroid hormone receptor assays.

This paper presents a relatively simple computer program for Scatchard plot analysis of binding data in steroid hormone receptor determination. The program is written in BASIC and adapted to a low-cost desktop calculator. The program is designed to permit data input without demanding extensive technical knowledge of either computer systems or mathematical background of receptor binding assays.

Breast Neoplasms↗
PubMed1975

VECTAN II: A computer program for the spatial analysis of the vectorcardiogram.

This paper presents the operation of a digital computer program, VECTAN II, for the spatial analysis of the vectorcardiogram (VCG). The program incorporates a unique waveform recognition algorithm based on the spatial vector length which has been shown to perform better than previous algorithms. The waveform analysis employed by the program considers the vectorcardiogram as a three dimensional entity rather than as scalar or planar representations. VECTAN II is designed chiefly to measure and quantify the VCG response of normal subjects to a controlled stress by analyzing one VCG complex every five seconds throughout a long experiment. The program has been used to analyzeom the NASA Johnson Space Center Cardiovascular Laboratory, from the pre- and postflight medical examinations of the Apollo 15, 16 and 17 crewmen, and from onboard Skylab experiments.

Aerospace Medicine↗
PubMed1985

A computer program for an illness-death process with time-dependent covariates.

This paper presents a computer program for estimating transition probabilities between states in a stochastic model for an illness-death process which incorporates time-dependent covariates. Parameters are estimated by the method of maximum likelihood using the Newton-Raphson iterative procedure. The program provides the standard normal deviate statistics as well as the value of the maximum of the likelihood function which can be used on repeated applications to test hypotheses concerning coefficients associated with covariates. Although this program is demonstrated by using a model with two 'illness' states and two 'death' states, it is also suitable for analyzing data with models involving fewer states, such as the analysis of survival time with covariates assuming a proportional hazard model.

Computers↗