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PubMed2006

Neutron diffraction data and molecular dynamics simulations of the molten mixture Ag(Br0.7I0.3).

The structure factors of the ionic liquid mixture Ag(Br(0.7)I(0.3)) at three temperatures, 723, 923, and 1023 K, as well as of the pure molten AgI at 923 K and the pure molten AgBr at 773 and 923 K, were studied experimentally and by means of molecular dynamics simulations. The experiments were carried out using the high intensity total scattering time-of-flight spectrometer, HIT-II, at the KENS spallation neutron source in Japan. The experimental data are very reliable, with the possible exception of the small momentum transfer region, whose accessibility is limited by neutron energy and detector positions. The simulations made use of the semiempirical rigid ion potentials of the Vashishta-Rahman [Phys. Rev. Lett. 40, 1337 (1978)] type using a new set of parameters appropriate for the mixture. Within the known constraints of the pairwise rigid ion potentials, the simulated structure factors are in fair agreement with experiment. The results for the pair distribution functions suggest that the molten mixture retains the superionic character found in previous calculations of both the AgI and AgBr melts. This suggestion is confirmed by the results for the self-diffusion coefficients. Values obtained for the ionic conductivities are also presented.

Journal Article↗

PubMed2001

Neutron diffraction study of a phenol.nitroxide radical adduct: a structural model for hydrogen atom abstraction by peroxyl radicals from vitamin E and related phenolic antioxidants.

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Antioxidants↗

PubMed1997

A low-resolution low-temperature neutron diffraction study of myoglobin.

Diffraction data to 5 A resolution were collected on a myoglobin crystal at 80, 130, 180 and 240 K. The linear coefficient of thermal expansion for myoglobin was determined to be 45 x 10(-6) K(-1), based on the measured expansion of the unit-cell parameters. The nature of the hydration layers surrounding the protein in the crystal is described in terms of a shell solvent model, which was used to calculate the coefficient of thermal expansion in reasonable agreement with the measured value. Wilson statistics were calculated and discussed in terms of an averaged disorder model. [F(T(2)) - F(80 K) exp(-iphi)] Fourier maps were calculated where T(2) was taken as 130, 180 and 240 K, respectively. None of these difference maps showed any features above 2.0sigma in the protein region. The 130 and 240 K difference maps showed many small and widely distributed negative difference features and showed very few positive difference features above 2.5sigma in the solvent region. However, the 180 K difference map showed an extensive negative difference feature at the interface between symmetry-related molecules, occurring in the vicinity of residues 40-50 on one molecule and 76-80 on a symmetry-related molecule. These difference neutron Fourier maps indicate a concerted effect at 180 K, which is interpreted in terms of an onset of extended lattice disorder.

Journal Article↗

PubMed1989

Structure of cycloguanil hydrochloride by neutron diffraction.

4,6-Diamino-1-(p-chlorophenyl)-1,2-dihydro-2,2-dimethyl-s-triazine hydrochloride, C11H15-CIN5+.Cl-, Mr = 288.20, monoclinic, P21/c, a = 8.783 (2), b = 10.267 (2), c = 17.234 (3) A, beta = 115.72 (1) degrees, U = 1400.1 (5) A3, Z = 4, Dx = 1.337 Mg m-3, lambda = 1.15882 (7) A for unit-cell determination and 1.04702 (7) A for collection of intensity data, mu = 0.191 mm-1, T = 15.0 (5) K, final R(F2) = 0.050 and wR(F2) = 0.063 for 3099 independent reflections. Five atoms of the triazine ring are nearly coplanar. The sixth, the quaternary C(2), is displaced from this plane (P1) so that the bond to one of its methyl substituents is nearly perpendicular to P1 while the other methyl substituent lies almost in the plane. The chlorophenyl-ring plane is nearly perpendicular to P1. The heterocycles form cyclic dimers via hydrogen bonds from the 6-amino group to ring atom N(5) of an adjacent molecule. All other N-H units are hydrogen bonded to the Cl- counter ion. The ring is protonated at position N(3).

Chemical Phenomena↗

PubMed1997

Structure and thermal vibrations of spermine phosphate hexahydrate from neutron diffraction data at 125 K.

Spermine phosphate hexahydrate crystallizes in space group P2(1)/a with unit-cell dimensions a = 7.931 (1), b = 23.158 (5), c = 6.856 (2) A, and beta = 113.44 (2) degrees at 125 K with unit-cell contents [(C10H30N4)2(4+)(HPO4)4(2-).12H2O]. The packing of spermines and monohydrogen phosphates in this crystal structure has features which may be relevant to the binding of spermine to DNA. Another important structural feature is the presence of channels containing water that is hydrogen bonded as in ice-Ih with disordered protons. The channels occur between sheets of spermine long chains and are also bordered by hydrogen-bonded monohydrogen phosphate chains. The hydrogen-bonding scheme of these water chains proposed on the basis of an earlier X-ray study is now confirmed. Nuclear positions, anisotropic mean-square (m.s.) displacements, an overall scale factor and two extinction parameters (rho and g) were refined using full-matrix least-squares giving values of R(F0(2)) = 0.09, Rw(F0(2)) = 0.11 and S = 1.02. Thermal vibrational analysis revealed that the backbone of the spermine cation can be described as a single rigid segment with a substantial libration of 27 deg2 around the spermine molecular long axis.

Crystallization↗

PubMed2000