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PubMed1984

Sedimentation field flow fractionation of DNA's.

Sedimentation field flow fractionation (SFFF) is a method for purifying and providing mass or size distribution information on samples containing particulates or soluble macromolecules. Since SFFF separations are based on simple physical phenomena related to first principles, molecular weight (or particle sizes) can be determined without calibration standards. SFFF is a gentle technique suited for fractionating biomolecules. Studies with the fragile lambda DNA (molecular weight, 33 X 10(6] and smaller supercoiled plasmids have shown that these materials are not altered during SFFF separation; molecular weights and conformation remain unchanged, and biological activity is not reduced. Recoveries of nucleic acids approach 100 percent. Typically, components with about 20 percent difference in mass can be separated essentially to baseline if required. Fractionation time is usually independent of molecular weight, and separations often can be carried out within an hour.

Chemical Fractionation↗
PubMed1994

Laminar comparison of somatosensory cortical plasticity.

During tactile learning there is a transformation in the way the primary somatosensory cortex integrates, represents, and distributes information from the skin. To define this transformation, the site of earliest modification has been identified in rat somatosensory cortex after a change in sensory experience. Afferent activity was manipulated by clipping all except two whiskers on one side of the snout ("whisker pairing"), and the receptive fields of neurons at different cortical depths were mapped 24 hours later. Neurons in layer IV, the target of the primary thalamic pathway, were unaltered, whereas neurons located above and below layer IV showed significant changes. These changes were similar to those that occur in layer IV after longer periods of whisker pairing. The findings support the hypothesis that the layers of cortex contribute differently to plasticity. Neurons in the supragranular and infragranular layers respond rapidly to changes in sensory experience and may contribute to subsequent modification in layer IV.

Action Potentials↗
PubMed1978

The Safety Net and preregistration posts.

The Safety Net is a clearing system that collects and distributes information about preregistration posts remaining unallocated after as many doctors as possible have been placed by local efforts. Provided that the local systems operate in the final year, the Safety Net should ensure that each student has a post allocated to him before he sits the final examination.

Education, Medical, Graduate↗
PubMed1995

Guide to the Internet. Logging in, fetching files, reading news.

Aside from email and the world wide web, there are several other systems for distributing information on the Internet. Telnet is a system that allows you to log on to a remote computer from anywhere on the Internet and affords access to many useful biomedical sites on the Internet. File transfer protocol (FTP) is a method of transferring files from one computer to another over the Internet. It can be used to download files, including software, from numerous publiclly accessible "anonymous FTP archives" around the world. Such archives can be searched using a tool known as Archie. Network News is a system of electronic discussion groups covering almost every imaginable subject, including many areas of medicine and the biomedical sciences; MOOs are virtual environments that allow real time electronic conferencing and teaching over the Internet. It is difficult to predict the future of medicine on the Internet. However, the net opens up many possibilities not available through previous technologies. It is now up to medical practitioners to realise the Internet's full potential.

Computer Communication Networks↗
PubMed1995

Oculocutaneous albinism among schoolchildren in Harare, Zimbabwe.

The term oculocutaneous albinism (OCA) covers a range of autosomal recessive genetic conditions involving hypopigmentation of the skin, hair, and eyes. In southern African black ethnic groups the tyrosinase positive form, OCA2, is predominant, with few cases of tyrosinase negative OCA1. The prevalence of OCA2 in schoolchildren in Harare, the capital city of Zimbabwe, was found to be 1 in 2833. The gene frequency for OCA2 was 0.0188, with a carrier frequency of 1 in 27. Most of the pupils with albinism belong to the majority Shona ethnic group. As consanguineous marriages are discouraged in the Shona culture this high rate is likely to be a result of genetic drift in a relatively small population showing limited mobility. OCA pupils were found in more than a third of the secondary schools in Harare, emphasising the importance of distributing information on albinism and its management widely throughout the school system.

Adolescent↗
PubMed2001

Small area estimation of incidence of cancer around a known source of exposure with fine resolution data.

OBJECTIVES: To describe the small area system developed in Finland. To illustrate the use of the system with analyses of incidence of lung cancer around an asbestos mine. To compare the performance of different spatial statistical models when applied to sparse data. METHODS: In the small area system, cancer and population data are available by sex, age, and socioeconomic status in adjacent "pixels", squares of size 0.5 km x 0.5 km. The study area was partitioned into sub-areas based on estimated exposure. The original data at the pixel level were used in a spatial random field model. For comparison, standardised incidence ratios were estimated, and full bayesian and empirical bayesian models were fitted to aggregated data. Incidence of lung cancer around a former asbestos mine was used as an illustration. RESULTS: The spatial random field model, which has been used in former small area studies, did not converge with present fine resolution data. The number of neighbouring pixels used in smoothing had to be enlarged, and informative distributions for hyperparameters were used to stabilise the unobserved random field. The ordered spatial random field model gave lower estimates than the Poisson model. When one of the three effects of area were fixed, the model gave similar estimates with a narrower interval than the Poisson model. CONCLUSIONS: The use of fine resolution data and socioeconomic status as a means of controlling for confounding related to lifestyle is useful when estimating risk of cancer around point sources. However, better statistical methods are needed for spatial modelling of fine resolution data.

Adolescent↗
PubMed1988

The role of the posterior parietal cortex in coordinate transformations for visual-motor integration.

Lesion to the posterior parietal cortex in monkeys and humans produces spatial deficits in movement and perception. In recording experiments from area 7a, a cortical subdivision in the posterior parietal cortex in monkeys, we have found neurons whose responses are a function of both the retinal location of visual stimuli and the position of the eyes in the orbits. By combining these signals area 7 a neurons code the location of visual stimuli with respect to the head. However, these cells respond over only limited ranges of eye positions (eye-position-dependent coding). To code location in craniotopic space at all eye positions (eye-position-independent coding) an additional step in neural processing is required that uses information distributed across populations of area 7a neurons. We describe here a neural network model, based on back-propagation learning, that both demonstrates how spatial location could be derived from the population response of area 7a neurons and accurately accounts for the observed response properties of these neurons.

Animals↗
PubMed1998

Correlation analysis of corticotectal interactions in the cat visual system.

We have studied the temporal relationship between visual responses in various visual cortical areas [17, 18, postero medial lateral suprasylvian (PMLS), postero lateral lateral suprasylvian (PLLS), 21a]) and the superficial layers of the cat superior colliculus (SC). To this end, simultaneous recordings were performed in one or several visual cortical areas and the SC of anesthetized paralyzed cats, and visually evoked multiunit responses were subjected to correlation analysis. Significant correlations occurred in 117 (24%) of 489 cortex-SC pairs and were found for all cortical areas recorded. About half of the significant correlograms showed an oscillatory modulation. In these cases, oscillation frequencies covered a broad range, the majority being in the alpha- and beta-band. On average, significant center peaks in cross-correlograms had a modulation amplitude of 0.34. Our analysis revealed a considerable intertrial variability of correlation patterns with respect to both correlation strength and oscillation frequency. Furthermore, cortical areas differed in their corticotectal correlation patterns. The percentage of cells involved a corticotectal correlation, as well as the percentage of significantly modulated correlograms in such cases, was low for areas 17 and PMLS but high for areas 18 and PLLS. Analysis of the cortical layers involved in these interactions showed that consistent temporal relationships between cortical and collicular responses were not restricted to layer V. Our data demonstrate a close relationship between corticotectal interactions and intracortical or intracollicular synchronization. Trial-by-trial analysis from these sites revealed a clear covariance of corticotectal correlations with intracortical synchronization. The probability of observing corticotectal interactions increased with enhanced local cortical and collicular synchronization and, in particular, with interareal cortical correlations. Corticotectal correlation patterns resemble in many ways those described among areas of the visual cortex. However, the correlations observed are weaker than those between nearby cortical sites, exhibit usually broader peaks and for some cortical areas show consistent phase-shifts. Corticotectal correlations represent population phenomena that reflect both the local and global temporal organization of activity in the cortical and collicular network and do not arise from purely monosynaptic interactions. Our findings show that both striate and extrastriate inputs affect the superficial SC in a cooperative manner and, thus, do not support the view that responses in the superficial SC depend exclusively on input from the primary visual areas as implied by the concept of "two corticotectal systems." We conclude that the corticotectal projections convey temporal activation patterns with high reliability, thus allowing the SC evaluation of information encoded in the temporal relations between responses of spatially disseminated cortical neurons. As a consequence, information distributed across multiple cortical areas can affect the SC neurons in a coherent way.

Animals↗
PubMed2002

Measuring information spatial densities.

A novel definition of the stimulus-specific information is presented, which is particularly useful when the stimuli constitute a continuous and metric set, as, for example, position in space. The approach allows one to build the spatial information distribution of a given neural response. The method is applied to the investigation of putative differences in the coding of position in hippocampus and lateral septum.

Animals↗
PubMed2003

Sequential Bayesian decoding with a population of neurons.

Population coding is a simplified model of distributed information processing in the brain. This study investigates the performance and implementation of a sequential Bayesian decoding (SBD) paradigm in the framework of population coding. In the first step of decoding, when no prior knowledge is available, maximum likelihood inference is used; the result forms the prior knowledge of stimulus for the second step of decoding. Estimates are propagated sequentially to apply maximum a posteriori (MAP) decoding in which prior knowledge for any step is taken from estimates from the previous step. Not only do we analyze the performance of SBD, obtaining the optimal form of prior knowledge that achieves the best estimation result, but we also investigate its possible biological realization, in the sense that all operations are performed by the dynamics of a recurrent network. In order to achieve MAP, a crucial point is to identify a mechanism that propagates prior knowledge. We find that this could be achieved by short-term adaptation of network weights according to the Hebbian learning rule. Simulation results on both constant and time-varying stimulus support the analysis.

Bayes Theorem↗
PubMed1981

What do they think we do? O.T. functions as perceived by administrators and allied health professionals.

Prior to preparing written material about the profession, hospital administrators in Alberta were surveyed by questionnaires in an attempt to ascertain the level of knowledge about occupational therapy roles and functions. Fifty-four respondents (administrators and other health professionals) replied to all sections of the questionnaire. Their responses have been analysed and compared to those of occupational therapists within the following areas: occupational therapists as prime agents in specific service areas, the occupational therapist's role in tasks relating specifically to physical medicine, tasks relating primarily to evaluation and treatment, tasks relating to consultation and teaching and tasks relating to administrative aspects of program management. There appears to be a lack of knowledge about the entire occupational therapy process; treatment techniques and media can be identified but how the client is assessed, goals set and the evaluation of the client's progress is not understood. Findings indicate that it is not advisable to publish and distribute information without first surveying the level of existing knowledge of the intended reader.

Alberta↗
PubMed1988

Review of pathology data for regulatory purposes.

This paper describes the review process for pathology data submitted to the Division of Pathology, Center for Food Safety and Applied Nutrition of the Food and Drug Administration. The Division of Pathology independently evaluates the pathology data submitted in support of the safety of a given compound. The submissions are examined for agreement between summarized information and data from individual animals, appropriateness of terminology applied to lesions, and adequacy of information (distribution and severity of observed lesions). Problems and concerns encountered during review sometimes require examination of microscopic slides. The slide review provides an independent characterization of the lesions and a verification of their incidence. We present some problems commonly encountered in our review of the pathology data and describe some recent pathology evaluations. Finally, we suggest some considerations for reporting pathology data that may facilitate regulatory review.

Animals↗
PubMed2006

Artificial ants deposit pheromone to search for regulatory DNA elements.

BACKGROUND: Identification of transcription-factor binding motifs (DNA sequences) can be formulated as a combinatorial problem, where an efficient algorithm is indispensable to predict the role of multiple binding motifs. An ant algorithm is a biology-inspired computational technique, through which a combinatorial problem is solved by mimicking the behavior of social insects such as ants. We developed a unique version of ant algorithms to select a set of binding motifs by considering a potential contribution of each of all random DNA sequences of 4- to 7-bp in length. RESULTS: Human chondrogenesis was used as a model system. The results revealed that the ant algorithm was able to identify biologically known binding motifs in chondrogenesis such as AP-1, NFkappaB, and sox9. Some of the predicted motifs were identical to those previously derived with the genetic algorithm. Unlike the genetic algorithm, however, the ant algorithm was able to evaluate a contribution of individual binding motifs as a spectrum of distributed information and predict core consensus motifs from a wider DNA pool. CONCLUSION: The ant algorithm offers an efficient, reproducible procedure to predict a role of individual transcription-factor binding motifs using a unique definition of artificial ants.

5' Untranslated Regions↗
PubMed1986

Intermediate filament networks: organization and possible functions of a diverse group of cytoskeletal elements.

Immunofluorescence and electron microscopic observations demonstrate that intermediate filaments (IF) form cytoplasmic networks between the nucleus and cell surface in several types of cultured cells. Intermediate filaments interact with the nuclear surface, where they appear to terminate at the level of the nuclear envelope. From this region, they radiate towards the cell surface where they are closely associated with the plasma membrane. On the basis of these patterns of IF organization, we suggest that IF represent a cytoskeletal system interconnecting the cell surface with the nucleus. Furthermore, IF also appear to interact with other cytoskeletal components including microtubules and microfilaments. In the former case microtubule-IF interactions are seen in cytoplasmic regions between the nucleus and the cell membrane, whereas microfilament-IF interactions occur in the cortical cytoplasm. IF also appear to be cross-linked to each other; especially in the case of the IF bundles that occur in epithelial cells. In order to determine the molecular and biochemical bases of the organizational state of IF we have developed procedures for obtaining IF-enriched 'cytoskeletons' of cultured cells. In these preparations IF-nuclear and IF-cell surface associations are retained. Thus, these preparations have enabled us to begin to study various IF-associated structures (e.g. desmosomes) and associated proteins (IFAPs) using biochemical and immunological methodologies. To date, the results support the idea that IF and their associated proteins may comprise the cell type specific molecular infrastructure that is involved in transmitting and distributing information amongst the major cellular domains; the cell surface/extracellular matrix, the cytoplasm and the nuclear surface/nuclear matrix.

Actin Cytoskeleton↗
PubMed2005

Response properties of electrosensory afferent fibers and secondary brain stem neurons in the paddlefish.

The passive electrosense is used by many aquatic animals to detect weak electric fields from other animals or from geoelectric sources. In contrast to the active electrosense, ;passive' means that there are no electric organs, and only external fields are measured. Electroreceptors are distributed in the skin, but are different from other skin senses because they can detect and localize sources a considerable distance away. Distant sources, however, stimulate a large number of receptors at the same time and central circuits have to compute the exact location of the source from this distributed information. In order to gain insights into the algorithms involved, we compared the response properties of units in the dorsal octavolateral nucleus (DON) with primary afferent fibers in the paddlefish. The following parameters were tested: spontaneous activity, sensitivity, frequency tuning, receptive field size, movement sensitivity, and topography within the DON. Although there are some differences in spontaneous activity and receptive field size, there are no major differences between primary afferents and DON units that could reveal any substantial amount of spatial information processing. In particular the lack of any topographic order within the DON renders a lateral interaction between neighboring receptive fields unlikely.

Afferent Pathways↗
PubMed2000

Health sciences librarianship in the new millennium.

Is the millennium really a critical point in time or just part of a continuum, in which health sciences librarians have always been innovators? Librarians have always had special knowledge that enabled them to identify, collect, organize, and distribute information. They have always embraced new technology, from the printing press to the Internet. As a profession, we must continue to promote how our particular skills can reinforce our role in the health care field.

Humans↗