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PubMed2003

Anchorage of oligonucleotide hybridization by tethered phenazine nucleoside analogue.

UV absorption and fluorescence techniques with a thermal denaturation procedure were used in studies of the anchorage of an oligonucleotide hybridization by a covalently tethered nucleoside analogue of an intercalating imidazophenazine derivative (Pzn). The formation by the (dT)(10)Pzn conjugate of the duplex complex with (dA)(15) and the triplex complex with (dA)(15) or poly(dA).poly(dT) was studied in buffered solutions with 0.11 and/or 1M sodium ions at the oligomer strand concentration of 10 microM. Because of the Pzn emission sensitivity to the interaction with adenine bases, a fluorescence technique was found to be effective in the detection of melting transitions. The attached Pzn substantially enhanced the thermal stability of complexes formed by (dT)(10) because of the intercalation mechanism, which increased the temperature of half-dissociation of the duplex by 10-12 degrees C and of the triplexes by approximately 13 degrees C. With the assumption of a two-state model of transition, the thermodynamic parameters for duplex formations were derived. The investigated variant of conjugation has a certain advantage over the widely used attachment via a flexible linker, consisting of a predetermined location of the Pzn chromophore in target sequences that makes it useful as a fluorescent reporter of the hybridization correctness. Molecular modeling was used to construct the geometries of the intercalation sites that turned out to be in conformity with the behavior of the Pzn fluorescence.

Fluorescence↗
PubMed1983

Studies on the phenazine methosulphate-tetrazolium capture reaction in NAD(P)+-dependent dehydrogenase cytochemistry. II. A novel hypothesis for the mode of action of PMS and a study of the properties of reduced PMS.

The results in the preceding paper have shown that the PMS-tetrazolium capture reaction as such is not sufficient to guarantee a correct localization of formazan in microscopically small dehydrogenase sites. For cytochemical reactions where the application of PMS leads to increased formazan formation, it is proposed that PMS functions not on its own, but as an efficient acceptor of NAD(P)H-oxidizing flavoproteins and thus increases the local NAD(P)H tetrazolium oxidoreductase activity. For the redox mediator vitamin K3 this type of mechanism could be proven with rat liver fractions. The relatively rapid NADPH oxidation precluded such simple experiments with PMS. An indication of such a stimulation by PMS was, however, obtained with soluble rat liver fraction. As escape of reducing equivalents from the site might also occur at the level of reduced PMS (PMSH) the solubility properties of PMSH were studied. It was found that PMSH has a low solubility in aqueous media and is hydrophobic. On basis of these findings a 'post-tetrazolium reduction' method seemed possible and could be experimentally confirmed.

Animals↗