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At least 271 records · Page 15Linked to original sources
PubMed2001

The mesoparasitic genera of the Ergasilidae (Copepoda): with descriptions of new species of Paeonodes Wilson and Therodamas Krøyer.

One species of each of the three mesoparasitic ergasilid genera, Therodamas Krøyer, Mugilicola Tripathi and Paeonodes Wilson, is described in detail. The descriptions of P. subviridis n. sp. and Mugilicola bulbosus Tripathi are based on new material collected from Liza subviridis (Valenciennes) from Guam and India, respectively. The description of Therodamas frontalis n. sp. is based on material from Mugil cephalus L. in Brazil and the redescription of Therodamas serrani Krøyer is based on examination of syntype material. The geographical distributions of all three genera are summarised. Analysis of the phylogenetic relationships between species of these three genera indicates that Paeonodes and Mugilicola form a single clade and that Paeonodes, as currently constituted, is paraphyletic.

Animals↗
PubMed2005

Molecular evidence for the polyphyly of the genus Hemitragus (Mammalia, Bovidae).

The genus Hemitragus includes three species of tahr distributed in distant geographical areas: the Himalayan tahr, H. jemlahicus, occupies the southern flanks of the Himalaya Mountains; the Nilgiri tahr, H. hylocrius, is endemic to southern India; and the Arabian tahr, H. jayakari, is unique to the mountains of south-east Arabia. All previous investigations were based on morphology, and these three species together have never been included in a molecular phylogenetic study. In this study, we constructed a molecular phylogeny of the tribe Caprini sensu lato to determine the taxonomic status of the three species of tahr. Phylogenetic analyses were carried out on a matrix including most extant species currently described in the tribe Caprini sensu lato, and 3165 nucleotide characters, coming from four different markers, i.e., an intron of the nuclear gene coding for the protein kinase C iota, and three mitochondrial genes (subunit II of the cytochrome c oxidase, cytochrome b, and 12S rRNA). The results show that the genus Hemitragus is polyphyletic, as H. jemlahicus is associated with Capra (goats), H. hylocrius is the sister-group of Ovis (sheep), and H. jayakari is allied with Ammotragus lervia (aoudad). In the light of these unexpected results, we revaluate the validity of the morphological characters originally used for defining the genus Hemitragus. At least, we propose a new taxonomy, where the three species of tahr are ranged into three monospecific genera: the genus Hemitragus is restricted to the Himalayan tahr, and two new genera are created: Arabitragus for the Arabian tahr and Nilgiritragus for the Nilgiri tahr.

Animals↗
PubMedDate not supplied

Cryphonectriaceae (Diaporthales), a new family including Cryphonectria, Chrysoporthe, Endothia and allied genera.

Recent phylogenetic studies on the members of the Diaporthales have shown that the order includes a number of distinct phylogenetic groups. These groups represent the Gnomoniaceae, Melanconidaceae, Valsaceae, Diaporthaceae and Togniniaceae. New groups representing undescribed families also have emerged and they have been referred to as the Schizoparme, Cryphonectria-Endothia and Harknessia complexes. In this study we define the new family Cryphonectriaceae (Diaporthales) to accommodate genera in the Cryphonectria-Endothia complex. These genera can be distinguished from those in other families or undescribed groups of the Diaporthales by the formation of orange stromatic tissue at some stage of their life cycle and a purple reaction in KOH and a yellow reaction in lactic acid associated with pigments in the stromatic tissue or in culture.

Ascomycota↗
PubMed2000

Molecular phylogeny, taxonomy, and evolution of nonmarine lineages within the American grapsoid crabs (Crustacea: brachyura).

Grapsoid crabs are best known from the marine intertidal and supratidal. However, some species also inhabit shallow subtidal and freshwater habitats. In the tropics and subtropics, their distribution even includes mountain streams and tree tops. At present, the Grapsoidea consists of the families Grapsidae, Gecarcinidae, and Mictyridae, the first being subdivided into four subfamilies (Grapsinae, Plagusiinae, Sesarminae, and Varuninae). To help resolve phylogenetic relationships among these highly adaptive crabs, portions of the mitochondrial genome corresponding to the 16S rRNA gene were sequenced for all grapsoid genera occurring in America. The resulting phylogeny confirms most of the present grapsid subfamilies but suggests reclassification of some of the genera and recognition of new taxonomic units. The two American gecarcinid genera might not represent a sister group to the Grapsidae but rather appear to have evolved within the latter. Colonization of inland habitats evolved in several lineages of the grapsoids, resulting in various forms of nonmarine life and different degrees of independence from the sea.

Animals↗
PubMed1995

Evolutionary analysis of the picornavirus family.

An exhaustive evolutionary analysis of the picornavirus family has been carried out using the amino acid sequences of several proteins of the viruses including: the capsid proteins (1D, 1B, and 1C) situated at the 5' end of the genome and responsible for the serotype of the viruses, and the viral polymerase (3D), located at the 3' end of the genome. The evolutionary relationships found among the viruses studied support the new classification, recently suggested, in contrast to the classical one, and the existence of a new genus for the picornavirus family. In the new taxonomic organization, five genera form the picornavirus family: (1) aphthoviruses, (2) cardioviruses, (3) hepatoviruses (previously classified as enteroviruses), (4) renteroviruses (which mainly constitute a combination of the previous genera rhinovirus and enterovirus), and (5) a new genus, with a new and unique representative: the echovirus 22. Our analysis also allowed us, for the first time, to propose the most probable sequence of speciation events to have given rise to the current picornavirus family. The bootstrap procedure was used to check the reliability of the phylogenetic trees obtained. The application of the method of the statistical geometry in distance space to internal branches of the tree revealed a high degree of evolutionary "noise," which makes the resolution of some internal branching points difficult.

Capsid↗
PubMed2003

Two new fleas (Siphonaptera: Ceratophyllidae: Leptopsyllinae) of Madagascar: Tsaractenus rodhaini n. sp. and Paractenopsyllus (Consobrinopsyllus n. subgen.) goodmani n. sp.

Following considerable sampling in Malagasy forests, two new species of endemic fleas from Madagascar are described. These are T. rodhaini n. sp. and P. goodmani n. sp., collected on small mammals. The material of T. rodhaini allows us to describe the previously unknown female of the genus Tsaractenus. We also complete the initial description of the genus with new diagnostic characters. Although it belongs to Paractenopsyllus, P. goodmani shows many unique characteristics. To help resolve certain systematic issues involving Malagasy Leptopsyllinae we introduce the new subgenus Consobrinopsyllus of Paractenopsyllus for P. goodmani. Its particular condition makes us consider valuable characters of the genus Tsaractenus. Carrying several traits of this genus, P. goodmani could constitute an intermediate step between the two endemic Malagasy leptopsylline genera. Considering these new findings the actual taxonomic position of the Malagasy genera among the Leptopsyllinae is discussed.

Animals↗
PubMed2000

Rare genera of actinomycetes as potential producers of new antibiotics.

A literature survey covering more than twenty-three thousand bioactive microbial products including eight thousand antiinfectives demonstrated the increasing relevance of the so called 'rare' actinomycetes as a source of new antibiotics. Past and present efforts in the isolation of rare actinomycetes have enriched the Biosearch Italia Strain Collection with more than twenty thousand strains, showing that, when selective isolation methods are developed and extensively applied, some genera, such as Actinomadura, Actinoplanes, Micromonospora, Microtetraspora, are not rare at all and can be recovered from many soil samples. The current focus is on the isolation of members of Streptosporangiaceae family, given their promising chemical diversity.

Actinomycetales↗
PubMed2001

Rare genera of actinomycetes as potential producers of new antibiotics.

A literature survey covering more than twenty-three thousand bioactive microbial products including eight thousand antiinfectives demonstrated the increasing relevance of the so called 'rare' actinomycetes as a source of new antibiotics. Past and present efforts in the isolation of rare actinomycetes have enriched the Biosearch Italia Strain Collection with more than twenty thousand strains, showing that, when selective isolation methods are developed and extensively applied, some genera, such as Actinomadura, Actinoplanes, Micromonospora, Microtetraspora, are not rare at all and can be recovered from many soil samples. The current focus is on the isolation of members of Streptosporangiaceae family, given their promising chemical diversity.

Actinomycetales↗
PubMedDate not supplied

[New elementary structures of actinomycete spores of the genera Actinomadura and Streptomyces].

The structure of spore surfaces was studied by electron microscopy in five species of actinomycetes, and two new types of elementary surface structures were discovered. The surface of spores in Streptomyces regensis consists of long flexible, closely interwoven, band-like structures 25 A wide. Ring-like structures 140--150 A in diameter can be observed on spores of Actinomadura verrucosospora; their clusters resemble grapes and the spore silhouette looks like a cone. Rod-like structures of spores in Streptomyces cavourensis and Str. streptomycini which form an ornament resembling the surface of a basket and tubular strucutres in Str. acrimycini of which hair-shaped spore protrusions are made are similar to the elementary structures of spore surfaces in other actinomycetes.

Microscopy, Electron↗
PubMed1982

Proposal of a new systematic arrangement of nematodes of the family Capillariidae.

A new delimitation of genera within the nematode family Capillariidae is proposed on the basis of revaluation of the features used in the taxonomy of these nematodes. The following genera are recognized as valid: Schulmanela Ivashkin, 1964 (subgenera Schulmanela Ivashkin, 1964, Piscicapillaria subgen. n. and Amphibiocapillaria subgen. n.), Paracapillaria Mendonça, 1963, Capillostrongyloides Freitas et Lent, 1935, Pseudocapillaria Freitas, 1959 (subgenera Pseudocapillaria Freitas, 1959 and Ichthyocapillaria subgen. n.). Freitascapillaria gen. n., Baruscapillaria gen. n., Liniscus Dujardin, 1845, Pearsonema Freitas et Mendonça, 1960, Capillaria Zeder, 1800, Echinocoleus López-Neyra, 1947, Eucoleus Dujardin, 1845, Pterothominx Freitas, 1959, Aonchotheca López-Neyra, 1947 and Calodium Dujardin, 1845; previously established genera are newly defined. The systematic status of the genera Gessyella Freitas, 1959 and Skrjabinocapillaria Skarbilovich, 1946 has not been so far elucidated. The author newly synonymizes the genera Ritaklossia Freitas, 1959 (= Eucoleus), Armocapillaria Gagarin et Nazarova, 1966 [= Pterothominx) and Hepaticola Hall, 1916 (=Calodium) and the species Hepaticola bakeri Mueller et Van Cleave, 1932 (=Pseudocapillaria catostomi (Pearse, 1924)) and Pseudocapillaria nuda Mendonça, 1963 (= Freitascapillaria maxillosa (Vaz et Pereira, 1934)); many new combinations of specific names are given. A key to the genera and subgenera of the family Capillariidae is provided.

Amphibians↗
PubMed1987

The relationships of Uronemus: a carboniferous dipnoan with highly modified tooth plates.

Previous accounts of the dentition of the Carboniferous dipnoan Uronemus have stressed the significance of the scattered small denticles. These, together with the marginal teeth and ridges, have been interpreted as primitive characters of the dipnoan dentition shared with three other genera: the Devonian Uranlophus and Griphognathus and the Carboniferous to Permian Conchopoma. Genera with tooth plates have been considered to be a monophyletic group in which tooth plates are a derived character; Uronemus has been excluded from this group in all previous investigations dealing with the significance of the dentition for determining relationships among dipnoans. The macromorphology of the dentition of Uronemus has been re-examined and correlated with the histology of all the dental tissues. Optical study of thin sections and scanning electron microscope study of the adjacent cut surfaces has shown that the hard, wear-resistant dentine of the teeth and ridges is petrodentine. The arrangement, growth, wear and histology of the dental tissues have been compared with those of denticulated and tooth-plated genera. The arrangement of new teeth relative to the tooth ridge, the pattern of wear along the ridge, and the type of dentine and its growth indicate that the dentition of Uronemus is best interpreted as a tooth plate with one long lingual tooth ridge and reduced lateral tooth rows. Therefore the marginal tooth ridges are not considered to be homologous with those of denticulate dipnoans such as Uranolophus. The presence of petrodentine, a tissue type only found in forms with tooth plates, is consistent with the view that the dentition is derived by modification of a radiate tooth plate. The denticles covering restricted regions of the palate and lower jaw are considered to have been a secondary acquisition. The suggestion that Conchopoma is a close relative of Uronemus is not accepted, and possible new relationships have been proposed. New data on Scaumenacia and Phaneropleuron, two other genera previously compared with Uronemus, are presented. Rhinodipterus, a form with elongate lingual ridges, is also discussed. Phaneropleuron is shown to have radiate tooth plates and not a marginal row of conical teeth as previously described. It is proposed that the tooth plate of Uronemus is derived from a dipterid type of plate. A discussion of some of the other factors involved in determining the relationships of the genus is given.(ABSTRACT TRUNCATED AT 400 WORDS)

Animals↗
PubMed2001

Complete mitochondrial genome sequences of two extinct moas clarify ratite evolution.

The origin of the ratites, large flightless birds from the Southern Hemisphere, along with their flighted sister taxa, the South American tinamous, is central to understanding the role of plate tectonics in the distributions of modern birds and mammals. Defining the dates of ratite divergences is also critical for determining the age of modern avian orders. To resolve the ratite phylogeny and provide biogeographical data to examine these issues, we have here determined the first complete mitochondrial genome sequences of any extinct taxa--two New Zealand moa genera--along with a 1,000-base-pair sequence from an extinct Madagascan elephant-bird. For comparative data, we also generated 12 kilobases of contiguous sequence from the kiwi, cassowary, emu and two tinamou genera. This large dataset allows statistically precise estimates of molecular divergence dates and these support a Late Cretaceous vicariant speciation of ratite taxa, followed by the subsequent dispersal of the kiwi to New Zealand. This first molecular view of the break-up of Gondwana provides a new temporal framework for speciation events within other Gondwanan biota and can be used to evaluate competing biogeographical hypotheses.

Animals↗
PubMed1995

Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations.

Small-subunit ribosomal DNA sequences were determined for 17 strains belonging to the genera Alteromonas, Shewanella, Vibrio, and Pseudomonas, and these sequences were analyzed by phylogenetic methods. The resulting data confirmed the existence of the genera Shewanella and Moritella, but suggested that the genus Alteromonas should be split into two genera. We propose that a new genus, the genus Pseudoalteromonas, should be created to accommodate 11 species that were previously Alteromonas species, including Pseudoalteromonas atlantica comb. nov., Pseudoalteromonas aurantia comb. nov., Pseudoalteromonas carrageenovoa comb. nov., Pseudoalteromonas citrea comb. nov., Pseudoalteromonas denitrificans comb. nov., Pseudoalteromonas espejiana comb. nov., Pseudoalteromonas haloplanktis comb. nov. (with two subspecies, Pseudoalteromonas haloplanktis subsp. haloplanktis comb. nov. and Pseudoalteromonas haloplanktis subsp. tetraodonis comb. nov.), Pseudoalteromonas luteoviolacea comb. nov., Pseudoalteromonas nigrifaciens comb. nov., Pseudoalteromonas rubra comb. nov., and Pseudoalteromonas undina comb, nov., and one species that previously was placed in the genus Pseudomonas, Pseudoalteromonas piscicida comb. nov. We propose that P. haloplanktis (type strain, ATCC 14393) should be the type species of the genus Pseudoalteromonas. At this time the emended genus Alteromonas is restricted to a single species, Alteromonas macleodii.

Base Sequence↗
PubMed2000

Evolutionary relationships among 12 species belonging to three genera of the family Microhylidae in Papua New Guinea revealed by allozyme analysis.

To elucidate the potential of electrophoretic analysis for understanding relationships among microhylid frogs in Papua New Guinea, an allozyme analysis was conducted. A total of 119 individuals from nine species of Cophixalus, two species of Sphenophryne and one species of Barygenys, all of which belong to the family Microhylidae, were studied. Fourteen enzymes extracted from skeletal muscles and livers were analyzed by starch-gel electrophoresis. These enzymes were encoded by genes at 20 loci. There were 2-15 phenotypes produced by 2-12 alleles at these loci. The mean proportion of heterozygous loci per individual, mean proportion of polymorphic loci per population, and mean number of alleles per locus in 12 species were 6.1%, 17.1% and 1.17a on average, respectively. The NJ and ML trees constructed from Nei's genetic distances showed that the genus Sphenophryne can be distinguished biochemically from Cophixalus and Barygenys, and that the species groups of Cophixalus, which are similar in external morphology, can be divided biochemically into several species.

Journal Article↗
PubMed2001

Development and use of a new medium to detect yeasts of the genera Dekkera/Brettanomyces.

AIMS: The objectives of this work were to develop a selective and/or differential medium able to efficiently recover Dekkera/Brettanomyces sp. from wine-related environments and to determine the relationship between these yeasts and the 4-ethylphenol content in a wide range of wines. METHODS AND RESULTS: The selectivity of the developed medium was provided by the addition of ethanol, as single carbon source, and cycloheximide. The inclusion of bromocresol green evidenced acid-producing strains. The inclusion of p-coumaric acid, substrate for the production of 4-ethylphenol, enabled the differentiation by smell of Dekkera/Brettanomyces sp. from all other yeast species growing in the medium. The medium was used either by plating after membrane filtration or by the Most Probable Number (MPN) technique. In 29 white and 88 red randomly collected wines, these yeasts were found only in red wines at levels up to 2500 MPN ml-1, but constituted less than 1% of the total microbial flora. In red wines, 84% showed detectable amounts of 4-ethylphenol up to 4430 microg l-1 while 28% of the white wines showed detectable levels up to 403 microg l-1. CONCLUSION: The use of the medium proposed in this work evidenced the presence of low relative populations of Dekkera/Brettanomyces sp. even in wines contaminated by fast-growing yeasts and moulds. SIGNIFICANCE AND IMPACT OF THE STUDY: Further ecological studies on Dekkera/Brettanomyces sp. should take into account the use of highly specific culture media in order to establish their true occurrence in nature.

Cell Division↗
PubMed2005

Cultivable oral microbiota of domestic dogs.

Bacteria were isolated from the dental plaques of nine dogs and a sample of pooled saliva from five other dogs and were then identified by comparative 16S rRNA gene sequencing. Among 339 isolates, 84 different phylotypes belonging to 37 genera were identified. Approximately half of the phylotypes were identified to the species level, and 28% of these were considered members of the indigenous oral microbiota of humans. The 16S rRNA gene sequences of the remaining 44 phylotypes were not represented in GenBank, and most of these phylotypes were tentatively identified as candidate new species. The genera most frequently isolated from saliva were Actinomyces (26%), Streptococcus (18%), and Granulicatella (17%). The genera most frequently isolated from plaque were Porphyromonas (20%), Actinomyces (12%), and Neisseria (10%). A comparison of the DNA sequences from this study with sequences of the human microbiota available in GenBank showed that, on average, canine and human microbiotas differed by almost 7% in the 16S rRNA gene. In conclusion, this study has shown that the cultivable oral microbiotas of dogs and humans show significant differences.

Animals↗
PubMed1990

Evolutionary relationship of some stalked and budding bacteria (genera Caulobacter, "Hyphobacter", Hyphomonas and Hyphomicrobium) as studied by the new integral taxonomical method.

A new approach was developed for the determination of taxonomic and evolutional relationships among four genera of oligotrophic bacteria. The main idea of this approach is the algorithmized integrative analysis of the morphological and physiological specificity of these bacteria, their 5S rRNA sequences, fatty acid and lipid composition of their membranes, as well as their sensitivity to a large variety of antibiotics. It was shown that the genera Caulobacter and Hyphomonas are closely related to each other, but they are both distant from Hyphomicrobium species. The new genus, "Hyphobacter", is placed between Caulobacter and Hyphomonas. Taxonomic heterogeneity was found to exist within the genera Caulobacter and Hyphomicrobium. Evolutional pathways from Caulobacter to Hyphomicrobium are proposed on the basis of the present data. No correlations were found between the cell morphology of the organisms and their geno- and chemotaxonomy.

Anti-Bacterial Agents↗
PubMed2006

Robinia aurata n. g., n. sp. (Digenea: Hemiuridae) from the mugilid Liza aurata with a molecular confirmation of its position within the Hemiuroidea.

Robinia aurata n. g., n. sp. is described from Liza aurata (Mugilidae), the golden grey mullet, from the Ebro Delta, Spanish Mediterranean. The new genus differs from all other hemiurid genera in the combined possession of muscular flanges and a vestigial ecsoma. Within the Bunocotylinae, which currently accommodates 2 genera, Bunocotyle and Saturnius, the new genus exhibits a unique combination of blind caeca, Juel's organ, post-ovarian bulk of the uterus in the hind-body, and tegumental papillae surrounding the oral and ventral sucker apertures. Furthermore, Robinia n. g. differs from both Bunocotyle and Saturnius in the nature of the muscular extensions around the oral sucker, with the shape of a muscular belt in the latter and numerous muscular papillae in the former. The phylogenetic hypothesis for the Bunocotylinae developed from sequence data analyses based on partial lsrDNA and complete ssrDNA combined (22 species) and V4 domain of the ssrRNA gene (37 species) supports the erection of the new genus and confirms its position within the Hemiuroidea. Both molecular analyses confirmed the monophyly of the Hemiuroidea, its division into 2 major clades and the polyphyly of the Derogenidae, as in previous studies, and suggest that the Gonocercinae (with 2 genera, Gonocerca and Hemipera), may require a distinct familial status. Finally, there was poor support for the distinct status of the Lecithasteridae and Hemiuridae, following previous suggestions based on different sequence data sets. A key to genera of the Bunocotylinae is presented.

Animals↗