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Early phonological and lexical development and otitis media: a diary study.

This diary study describes early phonological and lexical development in a child with chronic otitis media with effusion. Equipped with the tools of a referential/analytic language-learner, the child solved the problem of reduced and fluctuating auditory input with phonological selection and avoidance strategies that capitalized on prosodic cues. This 'tone-language' approach resulted in a lexical inventory that would be categorized as an extreme expressive style. Having 'boot-strapped' her lexical learning, the child continued to rely on phonological constraints and selection strategies to fuel lexical and syntactic growth, i.e. cross-domain interactions leading to a vocabulary spurt and the onset of two-word utterances. These findings illustrate the need to consider interactions among performance, input and linguistic constraints in order to explain individual variation in language learning.

Child↗

Evolution and maintenance of the environmental component of the phenotypic variance: benefit of plastic traits under changing environments.

How environmental variances in quantitative traits are influenced by variable environments is an important problem in evolutionary biology. In this study, the evolution and maintenance of phenotypic variance in a plastic trait under stabilizing selection are investigated. The mapping from genotypic value to phenotypic value of the quantitative trait is approximated by a linear reaction norm, with genotypic effects on its phenotypic mean and sensitivity to environment. The environmental deviation is assumed to be decomposed into environmental quality, which interacts with genotypic value, and residual developmental noise, which is independent of genotype. Environmental quality and the optimal phenotype of stabilizing selection are allowed to randomly fluctuate in both space and time, and individuals migrate equally before development and reproduction among different niches. Analyses show that phenotypic plasticity is adaptive within variable environments if correlations have become established between the optimal phenotype and environmental quality in space and/or time. The evolved plasticity increases with variances in optimal phenotypes and correlations between optimal phenotype and environmental quality; this further induces increases in mean fitness and the environmental variance in the trait. Under certain circumstances, however, the environmental variance may decrease with increase in variation in environmental quality.

Biological Evolution↗

Quantitative characterization of the transcriptional regulatory network in the yeast cell cycle.

MOTIVATION: Genome-wide gene expression programs have been monitored and analyzed in the yeast Saccharomyces cerevisiae, but how cells regulate global gene expression programs in response to environmental changes is still far from being understood. We present a systematic approach to quantitatively characterize the transcriptional regulatory network of the yeast cell cycle. For the interpretative purpose, 20 target genes were selected because their expression patterns fluctuated in a periodic manner concurrent with the cell cycle and peaked at different phases. In addition to the most significant five possible regulators of each specific target gene, the expression pattern of each target gene affected by synergy of the regulators during the cell cycle was characterized. Our first step includes modeling the dynamics of gene expression and extracting the transcription rate from a time-course microarray data. The second step embraces finding the regulators that possess a high correlation with the transcription rate of the target gene, and quantifying the regulatory abilities of the identified regulators. RESULTS: Our network discerns not only the role of the activator or repressor for each specific regulator, but also the regulatory ability of the regulator to the transcription rate of the target gene. The highly coordinated regulatory network has identified a group of significant regulators responsible for the gene expression program through the cell cycle progress. This approach may be useful for computing the regulatory ability of the transcriptional regulatory networks in more diverse conditions and in more complex eukaryotes. SUPPLEMENTARY INFORMATION: Matlab code and test data are available at http://www.ee.nthu.edu.tw/~bschen/quantitative/regulatory_network.htm

Algorithms↗

The effects of epinephrine, ibuprofen, and tetrachlorodecaoxide on cutaneous microcirculation in thermally injured hamsters.

Fluctuations in the diameter of selected arterioles in the cutaneous microcirculation of Syrian golden hamster dorsal skin flap chambers, which ranged in size from 10 to 70 microns at different branching order sites, were measured before burn, at the same sites after burn and after injection of the drug. Three different drugs epinephrine (administered intravenously), ibuprofen (administered intravenously), and tetrachlorodecaoxide (administered intravenously and topically) were evaluated. Results show that the response to thermal injury in the control group involved extensive vasodilation in the arterioles, prolonged flow irregularities including flow obstructions and stasis, and a decrease in the level of vasoactivity of the microvessels. In two treatment groups, the ibuprofen and tetrachlorodecaoxide groups, significant improvement as indicated by reduced vasodilation and edema and improved microcirculatory blood flow after injury were observed. Further testing of tetrachlorodecaoxide as a topically applied wound dressing is indicated.

Animals↗

Safety, efficacy, and effects on glycemic control of electroconvulsive therapy in insulin-requiring type 2 diabetic patients.

OBJECTIVE: To determine the safety, efficacy, and effects on glycemic control of electroconvulsive therapy (ECT) in insulin-requiring type 2 diabetic patients. METHODS: Chart review was conducted of 19 patients with insulin-requiring type 2 diabetes mellitus who underwent ECT at Mayo Clinic (Rochester, Minnesota) between 1993 and 2000. None of the patients received oral hypoglycemic drugs. Daily fasting blood glucose concentrations and daily insulin requirements were determined. For each patient, the daily insulin requirements before the first ECT treatment were compared with insulin requirements after the last ECT treatment. In addition, the insulin requirements 1 day before and 1 day after each ECT treatment (n = 143) were compared. Charts were reviewed for activity, appetite, and weight changes. RESULTS: The average change in daily insulin requirements 1 day before the initiation of ECT compared with 1 day after the completion of ECT was not statistically significant. Changes in dietary or activity levels correlated with fluctuations in insulin requirements in selected individuals. There were no significant changes in acute glycemic control associated with ECT. CONCLUSIONS: Our findings refute previous reports of dangerous hyperglycemia or improved glycemic control due to ECT in insulin-requiring type 2 diabetes, and suggest that ECT is safe and efficacious in these patients.

Adult↗

Chemoreception, symmetry and mate choice in lizards.

Research on fluctuating asymmetry (FA)-mediated sexual selection has focused almost exclusively on visual signals and ignored chemical communication despite the fact that many species rely on chemical signals for attracting mates. Female mate choice based on visual traits appears to be rare in lizards. However, the femoral glands of male lizards produce pheromones which might transmit chemical information about an individual's developmental stability. Therefore, we hypothesized that mate choice may be based on chemical cues. We analysed the effect of the developmental stability levels of males on the attractiveness of males' scents to females in a laboratory experiment with the lizard Lacerta monticola. When we offered two males of similar body size, females preferentially associated with the scents of males with low FA in their femoral pores and also with the scents of males with a higher number of femoral pores. This suggested that the females were able to discriminate the FA of the males by chemical signals alone and that the females preferred to be in areas marked by males of high quality, thus increasing their opportunities of mating with males of high quality. We suggest that the quality and/or amount of male pheromones could communicate the heritable genetic quality of a male to the female and thereby serve as the basis for adaptive female choice in lizards.

Animals↗

Is evolvability involved in the origin of modular variation?

Lipson et al. (2002) presented an elegant linear algebraic formalism to define and study the evolution of modularity in an artificial evolving system. They employed simulation data to support their suggestion that modularity arises spontaneously in temporally fluctuating systems in response to selection for enhanced evolvability. We show analytically and by simulation that their correlate of modularity is itself under selection and so is not a reliable indicator of selection for modularity per se. In addition, we question the relation between modularity and evolvability in their simulations, suggesting that this modularity cannot confer enhanced evolvability.

Biological Evolution↗

'Spontaneous' transformation as aberrant epigenesis.

The NIH 3T3 line of cells has particular advantages for studying the dynamics of change in cellular phenotype in response to environmental conditions. Similar to stem cell growth during development, the cell line changes its phenotype under growth constraints that elicit differentiation or, alternatively, it maintains its original state over many replication cycles when grown without constraint. Unlike many cell types which respond by undergoing terminal differentiation, the NIH 3T3 cells continue to multiply indefinitely following an induced alteration in phenotype; the heritability of this change may thus be analyzed under stringent conditions of cell culture. During the course of over two years of frequent passage at low density in high calf serum (CS) concentration, a new subline developed which exhibited a consistent capacity to respond quickly and pervasively to growth constraints with an increase in saturation density, development of transformed foci in confluent cultures and altered appearance of isolated colonies. A retrospective study was undertaken, with cells from cryopreserved samples, of the course of changes in responsiveness of the cells to growth constraint leading up to the highly responsive state. Three stages were discerned, the first with an initially high capacity of a small fraction of cells to produce diffuse foci, but with a rapid decline in this capacity with frequent low density passages; the second stage, extending over more than 200 passages, of refractoriness to transformation; and the third stage (which probably arose by mutation) in which there is a consistent transformation-related response by the entire population to growth constraint, a response which has remained relatively constant over some 100 passages. A striking and novel feature of the third stage is seen on cloning the cells. Almost all the colonies obtained by cloning cells from post-confluent, growth-inhibited cultures are distinctly different in morphology from those obtained by cloning cells from the frequent low density passages. The pervasiveness of this morphological change among the clones is unmistakable evidence for a heritable adaptive response to growth constraint by most if not all of the cells in the population. The population-wide response of the cells of the third stage offers the opportunity for a rigorous, quantitative analysis of the nature of this type of persistent cellular change. Although cells of the third stage may be of mutational origin, their pervasive heritable response once the variant population is established supports the concept of progressive state selection which postulates that transformation can arise by the continuous fluctuation of growth states within cells, accompanied by the progressive selection of those states best suited to function under the selecting constraint. Relevance of the concept to the process of differentiation under growth constraint is considered.

3T3 Cells↗

Contribution of chromosome abnormalities to human morbidity and mortality.

Estimates of the association of chromosome aberrations with various adverse health outcomes are as follows: embryonic and fetal death (5-28 weeks), 33%; stillbirths, 5-10%; infant and early childhood death, 5-7%; retardation (IQ less than 50), 20-35%; (IQ 50-69), 5-15%; criminality an d retardation or psychiatric disturbance in males, 3%; other criminality, 0.3-0.8%; birth defects, 2.5-8%; heart defects, 10%; subfertility or infertility, 2-8%; multiple miscarriages, less than 1 to 13%; male pseudohermaphroditism, less than 25%; and primary amenorrhea, 25%. Variations in rates reflect statistical fluctuations and variations in the selection of populations for study. The estimates are based on currently used techniques; cryptic structural rearrangements may also contribute significantly to these outcomes.

Chromosome Aberrations↗

Widely tunable fiber-coupled single-frequency Er-Yb:glass laser.

A fiber-coupled tunable Er-Yb:glass minilaser is presented with output power of 40 mW. The laser can be stepwise tuned in single-frequency operation from 1530 to 1560 nm by compressing a fiber Bragg grating that provides selective feedback. Constant output power (fluctuation < 0.8 dB) over the full tuning range is demonstrated. The relative intensity noise spectrum was measured to be < 150 dB/Hz for frequencies > 2 MHz.

Journal Article↗

The relationship between composition of gain and circulating hormones in growing beef bulls fed three dietary crude protein levels.

Twenty-one Simmental crossbred bulls (311 +/- 11 kg, 9 mo of age) were used to determine the effect of feeding 10, 12 or 14% CP on concentration of hormones in blood and the relationship of these hormones to composition of gain. Six bulls were slaughtered on d 0 to provide an estimate of initial carcass composition (9-11 rib section). Remaining bulls were assigned to dietary treatments. Blood samples were collected every 30 min from 0800 to 2000 on d 0, 66, 136 and 202 of treatment; bulls were slaughtered on d 203. Across all treatments, growth hormone (GH) declined (P less than .05) from d 0 to d 202. Free insulin-like growth factor I (IGF-I) was lowest (P less than .05) on d 0. In four randomly selected bulls, IGF-I fluctuated during the 12-h sampling periods. Within each treatment group, insulin was greatest on d 202 (P less than .05). Testosterone (T) increased from d 0 to d 66, then declined. Cortisol (C) was lowest on d 66. Thyroid hormones increased (P less than .05) after d 0. Growth hormone and IGF-I were correlated negatively with carcass fat percentage, fat accretion rate and fat thickness. IGF-I concentrations were correlated positively with percentage of carcass protein. Testosterone:cortisol ratio was not related to composition, but high T coupled with low C may be related to carcass leanness (mean carcass fat = 24.4%). These data suggest that GH and IGF-I are the hormones most related to composition of gain in growing beef bulls.

Animals↗

Status of fetal tissue transplantation for the treatment of advanced Parkinson disease.

In the first double-blind, placebo-controlled randomized study of fetal tissue transplantation for the treatment of patients with advanced Parkinson disease (PD), investigators found that implanted dopaminergic tissue can produce measurable improvement in young PD in the absence of medication (that is, the "off" state). The results of the study, however, also highlighted several serious limitations of transplantation. In the group of older patients in the study (in the typical age range of individuals afflicted with PD) no improvement was derived from the implant despite positron emission tomography-documented scan evidence that the graft survived and produced dopamine. Patients in the study were selected because they experienced motor fluctuations, and the transplant did not improve dyskinesias or the time required to remain "on" medication for any subgroup of patients, including young patients. Five of 33 implant-treated patients developed involuntary movements (dyskinesias or dystonia) that could not be eliminated by reducing antiparkinsonian medications. These included four patients with the best responses to transplantation. Finally, some sham-operated patients experienced a dramatic placebo effect lasting at least 1 year, which justified the controversial sham surgery. The authors believe that these problems must be solved before fetal tissue transplantation can be considered a therapeutic option for PD.

Brain Tissue Transplantation↗

Long-term mortality study of steelworkers. IX. Mortality patterns among sheet and tin mill workers.

As a result of findings of an earlier report in this series, this study examines the updated cause-specific mortality of men employed in the sheet and tin mill areas of the steel industry. In order to investigate possible relationships between occupational responsibilities or exposures and mortality from specific causes, the sheet and tin mills have been subdivided into 13 mutually exclusive work areas. Detailed analysis is limited primarily to white workers due to the small number of nonwhites in these areas. The most important observations are: 1. Increased overall mortality appears for men employed in 1953 in the sheet finishing and shipping area, confirming the findings of Lloyd, et al. The earlier observation of a significant excess in deaths from vascular lesions of the central nervous system does not hold over time. The previously noted excess for this cause may be related to selective factors or an extreme chance observation. The excess in mortality from all causes of death, which occurs over several disease categories, may not be a result of occupational exposures, but rather some selectivity. 2. Significant excesses in mortality from arteriosclerotic heart disease are noted among men employed in batch pickling and sheet dryer operations, which is in agreement with the earlier findings. Increased risks of dying from hypertensive heart disease are seen in the coating area. 3. Cancer of the lymphatic and hematopoietic tissues is found to be a significant source of excess mortality for workers in the heat treating and forging and tin finishing and shipping work areas. 4. Steelworkers employed in the annealing-normalizing work area show an excess in deaths from nonmalignant respiratory diseases, primarily pneumonia. Further study in these areas should attempt to investigate whether factors in the work environment may be responsible for the observed excess mortalities. More specifically, work should be done to find out whether men employed in heat treating and forging and tin finishing and shipping work in close proximity to chemicals or radiation exposure and whether workers employed in the annealing-normalizing area are exposed to any kind of oil, vapor, or chemical which might be irritating or infectious to the respiratory system. A similar analysis for men working in the batch pickling and sheet dryers and coating areas would also be worthwhile. The main emphasis of any future study should lie upon investigating whether the observed excess mortalities are due to any environmental factor, selection for health, or random fluctuation.

Alloys↗

Effects of rifle weight and handling length on shooting performance.

The effects of rifle design parameters on shooting performance were explored in this study. Twelve subjects, all right handed experienced marksmen, were recruited for the experiments. In the first part of the experiment, effects of rifle weight and handling length on aiming stability were examined in a simulated aiming exercise. Multiple responses of joint angles of the upper extremities, EMG data of selected muscles, center of pressure fluctuations, aiming point fluctuations and subjective preference were analyzed. It was shown that different rifle designs led to an alteration of rifle holding postures and muscle activation levels in order to maintain the system in balance, thereby affecting aiming stability. In the second part of the experiment, the relationship between aiming stability and shooting accuracy was examined in a live-fire study. Aiming fluctuations data of the same subject in the two experiments were highly correlated (r = 0.92-0.94, p < 0.0001). Significant high correlations between aiming fluctuations and shot group dispersions (r = 0.86-0.98, p < 0.0001) support the assertion that aiming stability and successful shooting performance are interrelated. A practical implication of rifle design trade-off was addressed in the paper.

Adult↗

[A fluctuographic analysing of EEG patients with paroxysmal headache].

OBJECTIVE: To offer reference of the screening procedure for aircrew and astronaut selection. METHOD: The competitive frequency-fluctuation characteristics of the dominant frequency in the band of 7-12 Hz in EEG and power density spectra of alpha band power-fluctuation were analyzed with a newer system of electroencephalofluctuographic technology in 20 patients (male 13, female 7, aged 17-37 years) with paroxysmal headache. RESULT: During episodes of headache in the affected sites the cumulated dominant fluctuation probability of each frequency components was in the order of 7, 8, 9, 10, 11, 12 Hz from high to low; The relative entropy value was 92.25% +/- 3.41%; Two peaks having at least 25% higher value than those of its neighbors were observed at 1.86 mHz and 4.65 mHz in power density spectra of power-fluctuation. During the intervals of episodes the above-mentioned probability character disappeared; The relative entropy value was decreased to 69.08% +/- 4.16% ; A new peak was found at 0.93 mHz in spectra power-fluctuation, with a reduction in peak value power at 4.65 mHz. CONCLUSION: It not only offered a parameter for pathophysiological and functional evaluation of paroxysmal headache, but also provided reference of the screening procedure for aircrew and astronaut selection.

Adolescent↗

Different physiological MRI noise between cortical layers.

Significantly higher temporal fluctuations of the blood oxygenation level-dependent (BOLD) signal in the living rat group compared to that in the dead rat group were observed in the cortex, suggesting the existence of physiological information in the signal fluctuations. A similar analysis shows significantly different fluctuations between visual cortical layers. The highest fluctuations were observed in layers 4 and 5 and the lowest in layer 1. Given the consistency with published electrophysiology studies anticipating high spontaneous activity in the deeper layers (particularly layer 4), and low activity in superficial layers, we hypothesize that the BOLD signal temporal fluctuations may reflect cortical neuronal activity. Temporal fluctuations in ultrahigh spatial resolution data of the rat brain were measured in two ways. In the first, analyses were performed according to known layer widths, and in the second equal lines of 117 micro along the cortex were selected. The second approach yielded temporal fluctuations along the cortex that resemble known neuronal density distributions including the intralayer structure, particularly within layer 5.

Animals↗

A study of oligonucleotide occurrence distributions in DNA coding segments.

In this paper we present a general strategy designed to study the occurrence frequency distributions of oligonucleotides in DNA coding segments and to deal with the problem of detecting possible patterns of genomic compositional inhomogeneities and disuniformities. Identifying specific tendencies or peculiar deviations in the distributions of the effective occurrence frequencies of oligonucleotides, with respect to what can be a priori expected, is of the greatest importance in biology. Differences between expected and actual distributions may in fact suggest or confirm the existence of specific biological mechanisms related to them. Similarly, a marked deviation in the occurrence frequency of an oligonucleotide may suggest that it belongs to the class of so-called "DNA signal (target) sequences". The approach we have elaborated is innovative in various aspects. Firstly, the analysis of the genomic data is carried out in the light of the observation that the distribution of the four nucleotides along the coding regions of the genoma is biased by the existence of a well-defined "reading frame". Secondly, the "experimental" numbers found by counting the occurrences of the various oligonucleotide sequences are appropriately corrected for the many kinds of mistakes and redundancies present in the available genetic Data Bases. A methodologically significant further improvement of our approach over the existing searching strategies is represented by the fact that, in order to decide whether or not the (corrected) "experimental" value of the occurrence frequency of a given oligonucleotide is within statistical expectations, a measure of the strength of the selective pressure, having acted on it in the course of the evolution, is assigned to the sequence, in a way that takes into account both the value of the "experimental" occurrence frequency of the sequence and the magnitude of the probability that this number might be the result of statistical fluctuations. If the strength of the selective pressure evaluated in this fashion turns out to be sufficiently large, the corresponding sequence will be considered to have an occurrence frequency beyond expectations and, hence, to be statistically and biologically interesting.

Algorithms↗

Selection of a slow-release theophylline product.

Slow-release formulations of theophylline, if absorbed completely, consistently, and at a sufficiently slow rate, provide more stable serum concentrations at longer dosing intervals than plain uncoated tablets or liquids and thus have the potential to improve efficacy, safety, and compliance. However, clinically important differences in extent and rate of absorption exist among the 15 slow-release formations available under 29 different brand names or as generic products in the United States. Moreover, food has different effects on the various formulations. Whereas some formulations are little affected by food with only a slight delay in absorption, others undergo malabsorption in either the presence or absence of food, depending on as yet unidentified but specific formulation factors. Because fluctuations in serum concentrations at any selected dosing interval are a function of the rate of elimination of theophylline from the patient and the rate of absorption of theophylline from the formulation, selection of a product and dosing interval needs to be an individualized clinical decision independent of marketing or regulatory influences. Most formulations with claims for twice-daily dosing cannot reliably maintain fluctuations in serum concentration whereby the peak will not exceed twice the trough. Moreover, of the three products approved for once-a-day dosing, fluctuations in serum concentration are more likely to be larger than are clinically optimal, and malabsorption occurs with two of the three approved formulations unless taken after food; one, in fact, has such a large increase in rate and extent of absorption when taken with food that its postprandial absorption characteristics are aptly described as "dose-dumping."

Delayed-Action Preparations↗