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Multiple kinase arrest points in the G1 phase of nontransformed mammalian cells are absent in transformed cells.

We have shown that nontransformed mammalian cells arrest early in the G1 phase of the cell cycle when treated with exceedingly low concentrations of the nonspecific kinase inhibitor staurosporine, whereas transformed cells continue to progress through the cell cycle. We have now treated normal or transformed human skin fibroblasts with four other kinase inhibitors. Three of these inhibitors are highly specific: KT5720 inhibits cAMP-dependent protein kinase, KT5823 inhibits cGMP-dependent protein kinase, and KT5926 inhibits myosin light-chain kinase. The fourth inhibitor K252b has a moderate specificity for protein kinase C but also inhibits the three kinases just mentioned. We have found that these inhibitors reversibly arrest normal human skin fibroblasts at different times in the G1 phase but do not affect the cell cycle progression of transformed cells. The times of arrest within the G1 phase can be divided into two categories. Two of the inhibitors, KT5926 and K252b, act at an early time that is approximately 4 h after the transition from G0 to G1. The cAMP- and cGMP-dependent protein kinase inhibitors KT5720 and KT5823 arrest cells at a later time that is approximately 6 h after the G0/G1 boundary. These data indicate that there are multiple kinase-mediated phosphorylations of different substrates that are essential for the progression of normal cells, but not transformed cells, through the G1 phase. These inhibitors provide us with a set of biochemical probes that should be invaluable in the study of the function of kinases during G1 phase progression of normal cells.

Alkaloids↗

Fractionalization of the linear cyclic transforms.

In this study the general algorithm for the fractionalization of the linear cyclic integral transforms is established. It is shown that there are an infinite number of continuous fractional transforms related to a given cyclic integral transform. The main properties of the fractional transforms used in optics are considered. As an example, two different types of fractional Hartley transform are introduced, and the experimental setups for their optical implementation are proposed.

Journal Article↗

Concepts and transformational knowledge.

The effect of exposure to principled change in concept formation was investigated in four experiments. In Experiment 1, participants were trained on either patterns that transformed systematically or control patterns that were distorted randomly. Training on transformational patterns produced concepts that were more resistant to false intrusions and decay. Experiment 2 separated the relative influences of transformational knowledge and pairwise similarity. Participants were able to identify the next pattern in a transformational sequence even though the foils were closer to the training patterns. Experiment 3 investigated whether participants use transformational information in a speeded categorization task. Participants were faster at classifying patterns that continued a transformational path than patterns that fell off the path, only if they had trained on the transformational patterns in a systematic order. Experiment 4 used multidimensional scaling to explore the psychological structure of transformational knowledge following training. Analyses revealed clear evidence of a transformational path with systematic training. Implications for theories of similarity and categorization are discussed.

Adult↗

Herpesvirus-transformed cytotoxic T-cell lines.

Investigations of cellular cytotoxicity of the immune system are hampered by the lack of continuously growing, transformed cell lines which express a cytotoxic potential. Here we describe cytotoxic cell lines from the cotton-topped marmoset monkey, transformed by Herpesvirus Ateles (HVA) or Herpesvirus Saimiri (HVS), which can kill certain target cells in a short-term in vitro test. HVA/HVS-transformed cells have earlier been classified as belonging to the T-cell lineage in contrast to Epstein-Barr virus (EBV)-transformed cells derived from B lymphocytes. We suggest that the HVA/HVS-transformed killer cell lines described here represent an effector population resembling, or corresponding to, marmoset natural killer (NK) cells and that they may be used to define the cytolytic mechanism involved in cellular cytotoxicity and possibly also effector cell receptors and target cell antigens, as well as regulatory mechanisms of general biological interest.

Animals↗

Derivation of herpesvirus saimiri-transformed CD8+ T cell lines with noncytotoxic anti-HIV activity.

Herpesvirus saimiri (HVS), strain 488-77, was used to derive continuously growing transformed human CD8+ T cell lines that can suppress HIV replication in CD4+ cells via the production of an antiviral factor(s). Transformed CD8+ cell lines were obtained by HVS infection of peripheral blood mononuclear cells or purified CD8- T cells from HIV-infected or uninfected individuals. Suppression of primary or laboratory isolates of HIV was mediated by factor permeation of a transwell membrane or by cell-free culture supernatants. Suppressing and nonsuppressing cell lines were IL-2-dependent for good growth and showed a similar activated cell surface phenotype. The cell lines produced varying amounts of the cytokines IL-8, IL-10, TNF-alpha, TNF-beta, RANTES, MIP-1 alpha, and MIP-1 beta, but not IFN-alpha. No correlation was observed between the level of any of these cytokines and the presence or absence of antiviral activity in cell line culture supernatants. These cell lines have become an important resource for studying antiviral factors produced by CD8+ T cells from HIV-infected individuals.

Anti-HIV Agents↗

Promotion of C3H/10T1/2 morphological transformation by polychlorinated dibenzo-p-dioxin isomers.

Few of the seventy-five chlorinated dibenzo-p-dioxin isomers present in the environment have been adequately characterized for their carcinogenic potential. In previous studies we observed that the carcinogenic dioxin isomer 2,3,7,8-tetrachlorodibenzo-p-dioxin promoted cell transformation when continuously applied to C3H/10T1/2 cells initiated by treatment with N-methyl-N'-nitro-N-nitrosoguanidine (MNNG). The current study was undertaken to evaluate the response of the C3H/10T1/2 cell transformation system to several other dioxin isomers of known carcinogenic potential. 1,2,3,6,7,8- and 1,2,3,7,8,9-hexachlorodibenzo-p-dioxin (HCDD) (1-1000 nM) and 2,7-dichlorodibenzo-p-dioxin (0.1-20 microM) failed to transform C3H/10T1/2 cells or to initiate transformation in cultures subsequently treated with the tumor promoter 12-O-tetradecanoylphorbol-13-acetate. Continuous exposure of MNNG-initiated cultures to 2,7-DCDD (1-5000 nM) produced elevated but not statistically significant numbers of transformed foci at the highest dose tested. 1,2,3,6,7,8- and 1,2,3,7,8,9-HCDD were promoters of transformation when applied at concentrations greater than or equal to 12 and 40 pM, respectively, to C3H/10T1/2 cultures initiated with MNNG. Maximum responses for both HCDD isomers were attained at concentrations between 120 and 400 pM. These studies suggest that the C3H/10T1/2 cell transformation system may provide a relevant in vitro model for the identification and study of carcinogenic dioxin isomers.

Animals↗

The Fourier analysis of biological transients.

With modern computing technology the digital implementation of the Fourier transform is widely available, mostly in the form of the fast Fourier transform (FFT). Although the FFT has become almost synonymous with the Fourier transform, it is a fast numerical technique for computing the discrete Fourier transform (DFT) of a finite sequence of sampled data. The DFT is not directly equivalent to the continuous Fourier transform of the underlying biological signal, which becomes important when analyzing biological transients. Although this distinction is well known by some, for many it leads to confusion in how to interpret the FFT of biological data, and in how to precondition data so as to yield a more accurate Fourier transform using the FFT. We review here the fundamentals of Fourier analysis with emphasis on the analysis of transient signals. As an example of a transient, we consider the human saccade to illustrate the pitfalls and advantages of various Fourier analyses.

Computational Biology↗

A new method for Doppler frequency analysis that promises a major improvement in performance.

The Doppler grey scale waveform obtained by frequency analysis is related to the blood flow velocity in the vessel under examination. Consequently, detailed evaluation of the Doppler spectral waveform or the instantaneous Doppler spectrum is clinically useful for assessing arterial disease. The purpose of this paper is to demonstrate the potential advantages of a new frequency analysis method (autoregressive moving average) for processing and displaying continuous wave and pulsed Doppler signals by comparing the quality of the Doppler spectral waveforms produced by this new method to those obtained by standard Fast Fourier transform analysis. Continuous wave pulsed Doppler recordings were stored on a computer and reprocessed by Fast Fourier transform and autoregressive moving average methods. Varying degrees of noise were added to both types of Doppler recordings in order to simulate the problems encountered in the clinical vascular laboratory. By comparing the two methods using standard Doppler spectral waveforms and 3-dimensional spectral plots, under adverse conditions of significant noise, the autoregressive moving average technique proved to be superior to the classical Fast Fourier approach. It is concluded that the autoregressive method of frequency analysis offers the potential for achieving significant improvements in the display of the Doppler spectral waveform when compared to the classical Fast Fourier approach. Such improvements may improve the accuracy in arterial disease assessment.

Blood Flow Velocity↗

Transformation of horse skin cells by type-C sarcoma viruses.

A horse skin cell line (E. Derm, NBL-6, CCL-57) was susceptible to focus formation by the Kirsten mouse sarcoma virus, feline sarcoma virus (ST stain) and the MSV pseudotypes with woolly monkey, gibbon monkey, RD-114, AT-124, baboon placenta and murine xenotropic (BALB/c 3T3 and C57L/JD) type-C viruses. Foci were detected within 5 days after infection and the transformed cells continued to produce infectious virus and group-specific antigen of their respective type-C leukemia viruses. The transformation efficiency of various type-C sarcoma viruses in horse cells was also very high.

Animals↗

In vitro production of human anti-sperm antibodies: effect of an oligoclonal antibody (F6) on sperm-egg interaction.

A method has been developed to establish lines of transformed lymphocytes able to produce in vitro the same anti-sperm antibodies as those naturally occurring in immuno-infertile individuals. We utilized lymphocytes from a male donor whose serum contained anti-sperm antibodies of the IgG class up to the dilution 1:10,000, as detected by means of immunobead binding. T lymphocytes were separated from B lymphocytes using magnetic beads coated with anti-T antibody. B lymphocytes were then placed at a concentration of 5 x 10(6)/ml in a 96-well plate, stimulated with phytohaemagglutinin (PHA) and transformed with Epstein-Barr virus. After a few days, only transformed cells continued growing and these were collected. The supernatant was tested for production of anti-sperm antibodies and those transformed lymphocytes shown to be synthesising antibodies directed against the sperm head and the tail were cloned. We obtained a clone of cells producing antibodies of the IgG1 class directed against the head of the spermatozoon. This oligoclonal antibody (F6) recognized a 58-kDa band from a lysate of sperm membranes and was able to reduce the penetration of zona-free hamster oocytes by capacitated spermatozoa.

Animals↗

Electrophoretic analysis of normal and regenerating rat liver membrane proteins.

It is known that the cell surface of transformed cells shows a composition different from that of normal cells. Since the growth response is one of the parameters which appears to be altered, i.e. transformed cells continue to proliferate under such conditions in which normal cells do not, each alteration of the membrane connected with transformation could be involved in proliferation control mechanisms. Therefore such modifications could be expected to occur also in normal cells undergoing mitotic stimulations. Our work aimed to test whether this hypothesis is true also in the case of regenerating liver following partial hepatectomy. Electrophoresis was performed with polyacrylamide gel additioned with SDS in liver membranes from rats partially hepatectomized from 4h, 15h and 24h and solubilized with different detergents (solutions A, B and C). From the results we observed that liver membranes from 4h hepatectomized rats show a decrease in the amount of high molecular weight proteins; the appearance of two additional bands with molecular weight about 40,000 was also detected. At 15h after operation we observed a percent increase in the high molecular weight areas and a decrease in the low molecular weight one.

Animals↗

Biomedical signal processing (in four parts). Part 2. The frequency transforms and their inter-relationships.

This is the second in a series of four tutorial papers on biomedical signal processing, and it concerns the relationships between commonly used frequency transforms. It begins with the Fourier series and Fourier transform for continuous time signals and extends these concepts for aperiodic discrete time data and then periodic discrete time data. The Laplace transform is discussed as an extension of the Fourier transform. The z-transform is introduced and the ideas behind the chirp-z transform are described. The equivalence between the time and frequency domains is described in terms of Parseval's theorem and the theory of convolution. The use of the FFT for fast convolution and fast correlation is described for both short recordings and long recordings that must be processed in sections.

Biomedical Engineering↗

Systematic evaluation of one-dimensional-to-two-dimensional near-infrared spectroscopy transformations with deep learning for quantifying coconut sap adulteration.

Near-infrared (NIR) spectroscopy have limitations when combined with deep learning (DL) algorithms because they rely on low-dimensional datasets. Therefore, we investigated the potential of transforming one-dimensional (1D) NIR spectra into two-dimensional (2D) spectrograms using synchronous and asynchronous techniques and the continuous wavelet transform (CWT) and their effectiveness by integrating with DL for detecting adulteration in coconut sap. NIR spectra (12,500-4000 cm-1) were collected from binary mixtures (0%-100%;w/w). The performance of all DL (convolutional neural networks-CNN, AlexNet and ResNet) models was compared with that of partial least squares (PLS). The models were ranked in the mentioned order based on their performances: 2D-CWT > 2D-asynchronous > 2D-synchronous > 1D/2D-PLS. The important features of the best model can be explained and visualized using gradient-weighted-class-activation-mapping. The findings highlight that the 1D-to-2D NIR data transformation combined with DL is a highly robust approach because it addresses the feature representation gap in NIR data and effectively captures the spatial-spectral correlations.

Spectroscopy, Near-Infrared↗

Interactions of dendrimers with selected amino acids and proteins studied by continuous wave EPR and Fourier transform EPR.

Interactions of polyamidoamine dendrimers, termed Gn, where n indicates the generation (=number of amidoamine layers), at different protonation levels with selected amino acids and proteins have been investigated by means of continuous wave electron paramagnetic resonance (cw-EPR) and pulsed-EPR (electron spin-echo = ESE) analyses. A low-generation dendrimer (G2) and a high-generation one (G6) were labeled with nitroxides for the EPR measurements. Gly, Glu, Arg, and Leu were selected as representative of neutral(zwitterionic)-polar, acidic, basic, and low-polar amino acids, respectively. The water-soluble proteins alpha-chymotrypsin and albumin were selected on the basis of a basic and an acidic isoelectric point, respectively. The cw-EPR spectra were analyzed by computing the line shapes to extract information about the dendrimer-biomolecule interactions. In general, dendrimers at a high protonation level interact stronger with amino acids than those at a low level of protonation. However, even for highly protonated dendrimers, a synergistic effect between hydrophilic and hydrophobic interactions promoted the formation of stable Gn-amino acid adducts, as demonstrated by the enhanced interactions with Leu. As expected from acid-base interactions, stable adducts were formed between Arg and highly protonated dendrimers and between Glu and low level protonated dendrimers. The relatively strong dendrimer interactions with the protein chymotrypsin and the poor interactions of dendrimers with albumin demonstrated that the protonated amino groups of the dendrimers are predominantly involved in the interactions with these proteins and indicated a significant role in the interactions with the dendrimers of the hydrophobic external residues of chymotrypsin. Computer-aided analysis of the ESE experiments was consistent with the cw-EPR results and supported the conclusion of a partial complexation of the nitroxides of the dendrimer with Leu and alpha-chymotrypsin.

Albumins↗

Cellular compartmentation of calcium in mouse fibroblasts in vitro depends on cell density and transformation.

Cellular compartmentation of Ca has been investigated by kinetic analysis of 45Ca efflux from preloaded cells at various states of cell density-dependent proliferation of normal (3T3) and transformed (3T6 and SV40-3T3) mouse cells. Three pools of exchangeable calcium were separated on the basis of their differing exchange kinetics. For each of the cell lines tested, all three compartments decrease with cell density. Significant differences between normal and transformed cells are observed upon quiescence of the normal cells, where the slowly exchanging compartment of normal cells gradually increases, whereas that of the transformed cells continues to decrease (with increasing cell density). Free cytoplasmic Ca2+ concentration as determined by the Quin 2 method, was found to be significantly higher in transformed cells than in normal cells. These results indicate significant differences in Ca homeostasis between normal and transformed cells.

Animals↗

A novel wavelet transform based analysis reveals hidden structure in ventricular fibrillation.

We report a new method of interrogating the surface ECG signal using techniques developed in the field of wavelet transform analysis. Previously unreported structure within the ECG during ventricular fibrillation (VF) is found using a high-resolution decomposition of the signal employing the continuous wavelet transform. We believe that wavelet transform methods could lead to the development of powerful tools for use in the resuscitation of patients with cardiac arrest.

Animals↗

Functional rescue of temperature-sensitive defects in the cell-cycle mutants of rat 3Y1 fibroblasts by the small t-antigen deletion mutant of simian virus 40.

We examined the effects of large T antigen of simian virus 40 (SV40) on the proliferation phenotypes of temperature-sensitive (ts) mutants of rat 3Y1 fibroblasts, which cease proliferating in the G1 phase of the cell cycle at a restrictive temperature (39.8 degrees C). Four ts mutants, each representing independent complementation groups, were transformed with the dl-884 mutant of SV40 which lacks the unique coding region for small t antigen. In the case of two ts mutants, their transformed derivatives did not cease proliferation at 39.8 degrees C. In the other two mutants, the transformed cells continued to enter the S phase but the cells became detached from the dishes thereafter, at 39.8 degrees C. The proliferation phenotypes of the dl-884-transformed cells at 39.8 degrees C were quite similar with those of the same mutants transformed with the wild-type SV40. These results indicate that large T antigen alone is sufficient to overcome the inhibition of cellular entry into S phase caused by four different ts defects and determines the proliferation phenotypes of the cells after entering the S phase at a restrictive temperature, and that small t antigen does not alter the cellular phenotypes determined by large T antigen.

Animals↗

Whatever happened to eHealth?

Innovations in information technology will continue to transform the health care system to a system that more closely resembles that envisioned in the 1999 and 2001 IOM reports. Healthcare Leadership & Management Report will continue to report over the next few months on practical use of technology to improve the health care system. We are now researching several systems and providers that are using technology to improve their patient care, productivity, bottom line and host of operational concerns.

Commerce↗