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PubMed2005

Growth and biomass of mycorrhizal mycelia in coniferous forests along short natural nutrient gradients.

Total fungal biomass, the biomass of ectomycorrhizal and ericoid mycorrhizal (EM + ErM), and arbuscular mycorrhizal (AM) fungi, as well as the production of EM and AM fungi, were estimated in coniferous forest soils along four natural nutrient gradients. Plant community changes, forest productivity, soil pH and N availability increase over relatively short distances (< 100 m) along the gradients. The amounts of the phospholipid fatty acid (PLFA) 18 : 2omega6,9 were used to estimate total fungi (not including AM), and the PLFA 16 : 1omega5 to estimate AM fungi in soil samples. The decrease in the PLFA 18 : 2omega6,9 during incubation of soils was used to estimate EM + ErM biomass. Production of AM and EM mycorrhiza was estimated using ingrowth mesh bags. Total fungal biomass was highest in soils with the lowest nutrient availability and tree productivity. Biomass of ErM + EM was also highest in these soils. We found tendencies that EM mycelial production was lowest in the soils with the highest nutrient availability and tree productivity. Production of AM fungi was highest in nutrient-rich soils with high pH. Our results suggest that mycorrhizal communities change from being ErM-, to EM- and finally to AM-dominated along these gradients. The observed changes in mycorrhizal type in the short nutrient gradients follow similar patterns to those suggested for altitudinal or latitudinal gradients over longer distances.

Biomass↗
PubMed2006

Balancing the energy flow from captured light to biomass under fluctuating light conditions.

The balance of energy flow from light absorption into biomass was investigated under simulated natural light conditions in the diatom Phaeodactylum tricornutum and the green alga Chlorella vulgaris. The energy balance was quantified by comparative analysis of carbon accumulation in the new biomass with photosynthetic electron transport rates per absorbed quantum, measured both by fluorescence quenching and oxygen production. The difference between fluorescence- and oxygen-based electron flow is defined as 'alternative electron cycling'. The photosynthetic efficiency of biomass production was found to be identical for both algae under nonfluctuating light conditions. In a fluctuating light regime, a much higher conversion efficiency of photosynthetic energy into biomass was observed in the diatom compared with the green alga. The data clearly show that the diatom utilizes a different strategy in the dissipation of excessively absorbed energy compared with the green alga. Consequently, in a fluctuating light climate, the differences between green algae and diatoms in the efficiency of biomass production per photon absorbed are caused by the different amount of alternative electron cycling.

Acclimatization↗
PubMed2001

Nutritional influence on fungal colony growth and biomass distribution in response to toxic metals.

This work examines nutritional influence on fungal colony growth and biomass distribution in response to toxic metals. In low-substrate solid medium, 0.1 mM Cd, Cu and Zn caused a decrease in radial expansion of both Trichoderma viride and Rhizopus arrhizus. However, as the amount of available carbon source (glucose) increased, the apparent toxicity of the metals decreased. These metals also affected the overall length of the fungal mycelium and branching patterns. In low-nutrient conditions, T. viride showed a decrease in overall mycelial length and number of branches in response to Cu, resulting in an extremely sparsely branched colony. Conversely, although Cd also reduced overall mycelial length to about one-third of the control length, the number of branches decreased only slightly which resulted in a highly branched colony with many aberrant features. Cu and Cd induced similar morphological changes in R. arrhizus. A large-scale mycelial-mapping technique showed that disruption of normal growth by Cu and Cd resulted in altered biomass distribution within the colony. When grown on metal-free low-substrate medium, T. viride showed an even distribution of biomass within the colony with some allocation to the periphery. However, Cu caused most of the biomass to be allocated to the colony periphery, while in the presence of Cd, most biomass was located at the interior of the colony. These results imply that such alterations of growth and resource allocation by Cu and Cd may influence success in locating nutrients as well as survival, and that these metals have individual and specific effects on the growing fungus.

Biomass↗
PubMed2002

Global allocation rules for patterns of biomass partitioning in seed plants.

A general allometric model has been derived to predict intraspecific and interspecific scaling relationships among seed plant leaf, stem, and root biomass. Analysis of a large compendium of standing organ biomass sampled across a broad sampling of taxa inhabiting diverse ecological habitats supports the relations predicted by the model and defines the boundary conditions for above- and below-ground biomass partitioning. These canonical biomass relations are insensitive to phyletic affiliation (conifers versus angiosperms) and variation in averaged local environmental conditions. The model thus identifies and defines the limits that have guided the diversification of seed plant biomass allocation strategies.

Biomass↗
PubMed2006

Estimating high-affinity methanotrophic bacterial biomass, growth, and turnover in soil by phospholipid fatty acid 13C labeling.

A time series phospholipid fatty acid (PLFA) 13C-labeling study was undertaken to determine methanotrophic taxon, calculate methanotrophic biomass, and assess carbon recycling in an upland brown earth soil from Bronydd Mawr (Wales, United Kingdom). Laboratory incubations of soils were performed at ambient CH4 concentrations using synthetic air containing 2 parts per million of volume of 13CH4. Flowthrough chambers maintained a stable CH4 concentration throughout the 11-week incubation. Soils were analyzed at weekly intervals by gas chromatography (GC), GC-mass spectrometry, and GC-combustion-isotope ratio mass spectrometry to identify and quantify individual PLFAs and trace the incorporation of 13C label into the microbial biomass. Incorporation of the 13C label was seen throughout the experiment, with the rate of incorporation decreasing after 9 weeks. The delta13C values of individual PLFAs showed that 13C label was incorporated into different components to various extents and at various rates, reflecting the diversity of PLFA sources. Quantitative assessments of 13C-labeled PLFAs showed that the methanotrophic population was of constant structure throughout the experiment. The dominant 13C-labeled PLFA was 18:1omega7c, with 16:1omega5 present at lower abundance, suggesting the presence of novel type II methanotrophs. The biomass of methane-oxidizing bacteria at optimum labeling was estimated to be about 7.2 x 10(6) cells g(-1) of soil (dry weight). While recycling of 13C label from the methanotrophic biomass must occur, it is a slower process than initial 13CH4 incorporation, with only about 5 to 10% of 13C-labeled PLFAs reflecting this process. Thus, 13C-labeled PLFA distributions determined at any time point during 13CH4 incubation can be used for chemotaxonomic assessments, although extended incubations are required to achieve optimum 13C labeling for methanotrophic biomass determinations.

Alphaproteobacteria↗
PubMed1988

Biomass of the cryptoendolithic microbiota from the Antarctic desert.

Extractable lipid phosphate was used to determine the biomass of the cryptoendolithic microbiota that colonizes sandstone rocks in the Ross Desert region of Antarctica. The mean amount of lipid phosphate was 0.053 micromole/cm2 (n = 9), which equals 2.54 g of C per m2 (range, 1.92 to 3.26 g of C per m2) of biomass in the biotic zone of these rocks. The turnover of phospholipids was comparable to that of temperate sediments and soils (t1/2, 6 to 9 days) at 0 degrees C and a light intensity of 305 micromoles of photons per m2 per s, indicating that this was a good method to measure viable biomass. The biomass was 0.3 to 9.6% of the total carbon content of the biotic zone and was about 2 orders of magnitude smaller than the epilithic lichen dry weight at a location some 7 degrees north in latitude. The cryptoendolithic microbiota had a uniform density throughout the biotic zone under the rock surface. The results indicate that the cryptoendolithic microbial biomass is small but viable in this unique, extreme ecosystem.

Adenosine Triphosphate↗
PubMed2004

High-rate nitrification at low pH in suspended- and attached-biomass reactors.

This article reports on high-rate nitrification at low pH in biofilm and suspended-biomass reactors by known chemolithotrophic bacteria. In the biofilm reactor, at low pH (4.3 +/- 0.1) and low bulk ammonium concentrations (9.3 +/- 3.3 mg.liter(-1)), a very high nitrification rate of 5.6 g of N oxidized.liter(-1).day(-1) was achieved. The specific nitrification rate (0.55 g of N.g of biomass(-1).day(-1)) was similar to values reported for nitrifying reactors at optimal pH. In the suspended-biomass reactor, the average pH was significantly lower than that in the biofilm reactor (pH 3.8 +/- 0.3), and values as low as pH 3.2 were found. In addition, measurements in the suspended-biomass reactor, using isotope-labeled ammonium (15N), showed that in spite of the very low pH, biomass growth occurred with a yield of 0.1 g of biomass.g of N oxidized(-1). Fluorescence in situ hybridization using existing rRNA-targeted oligonucleotide probes showed that the nitrifying bacteria were from the monophyletic genus Nitrosomonas, suggesting that autotrophic nitrification at low pH is more widespread than previously thought. The results presented in this paper clearly show that autotrophic nitrifying bacteria have the ability to nitrify at a high rate at low pH and in the presence of only a negligible free ammonia concentration, suggesting the presence of an efficient ammonium uptake system and the means to cope with low pH.

Bacteria↗
PubMed2005

Determination of spatial distributions of zinc and active biomass in microbial biofilms by two-photon laser scanning microscopy.

The spatial distributions of zinc, a representative transition metal, and active biomass in bacterial biofilms were determined using two-photon laser scanning microscopy (2P-LSM). Application of 2P-LSM permits analysis of thicker biofilms than are amenable to observation with confocal laser scanning microscopy and also provides selective excitation of a smaller focal volume with greater depth localization. Thin Escherichia coli PHL628 biofilms were grown in a minimal mineral salts medium using pyruvate as the carbon and energy source under batch conditions, and thick biofilms were grown in Luria-Bertani medium using a continuous-flow drip system. The biofilms were visualized by 2P-LSM and shown to have heterogeneous structures with dispersed dense cell clusters, rough surfaces, and void spaces. Contrary to homogeneous biofilm model predictions that active biomass would be located predominantly in the outer regions of the biofilm and inactive or dead biomass (biomass debris) in the inner regions, significant active biomass fractions were observed at all depths in biofilms (up to 350 microm) using live/dead fluorescent stains. The active fractions were dependent on biofilm thickness and are attributed to the heterogeneous characteristics of biofilm structures. A zinc-binding fluorochrome (8-hydroxy-5-dimethylsulfoamidoquinoline) was synthesized and used to visualize the spatial location of added Zn within biofilms. Zn was distributed evenly in a thin (12 microm) biofilm but was located only at the surface of thick biofilms, penetrating less than 20 microm after 1 h of exposure. The relatively slow movement of Zn into deeper biofilm layers provides direct evidence in support of the concept that thick biofilms may confer resistance to toxic metal species by binding metals at the biofilm-bulk liquid interface, thereby retarding metal diffusion into the biofilm (G. M. Teitzel and M. R. Park, Appl. Environ. Microbiol. 69:2313-2320, 2003).

Biofilms↗
PubMed2006

Physical and chemical factors affecting microbial biomass and activity in contaminated subsurface riverine sediments.

Over 80 years of direct discharge of industrial effluents into the Mahoning River, located in northeastern Ohio, USA, has led to the accumulation of a wide variety of pollutants within its sediments. This study examined the physical and chemical parameters, including lipophilic pollutants, affecting microbial activity and biomass in subsurface (10-40 cm horizon) sediments. Microbial biomass was higher in anthropogenically contaminated sediments, and step-wise linear regression showed that approximately 82% of the variation in microbial biomass could be explained by total hexane extractable hydrocarbons, sediment particle size, and water content. There was no correlation between microbial activity and biomass. Independent variables influencing anaerobic activity were temperature and water holding capacity. The results of this study indicate that freshwater, sedimentary anaerobic microbial communities respond to a range of environmental parameters, many of which influence subsurface river sediments, and that lipophilic pollutants, when present, can cause increases in total microbial biomass.

Anaerobiosis↗
PubMed2001

Application of factorial design to study of heavy metals biosorption by waste biomass from beverage distillery.

A full factorial design leading to 20 sets of sorption runs was conducted to study the influence of four variables (bleaching earth and biomass concentrations, pH, and sorption time) on the iron, nickel, and chromium removal from stainless steel effluent using waste biomass from a beverage industry. Similar factor effects and interactions were found for each metal involved in this biosorption study, and the main factors were pH (positive effect) and biomass concentration (negative effect). Response surface methodology was adopted and an empirical linear polynomial model constructed on the basis of the specific uptake (mg of metal/g of biomass as dryweight) for each metal species. Under optimized process conditions (pH 4.0, biomass concentration of 2.0 g/L, absence of Celite), uptake values of 155 mg of Fe/g, 38 mg of Cr/g, and 0.4 mg of Ni/g were achieved after 3 h. This corresponded to a reduction in heavy metals concentration of approx 94% for Cr, 57% for Fe, and 25% for Ni.

Adsorption↗
PubMed2001

The water level influence on biomass of Echinochloa polystachya (Poaceae) in the Jurumirim Reservoir (São Paulo, Brazil).

In the Paranapanema River mouth, Jurumirim Reservoir (23 degrees 27'-23 degrees 29'S and 48 degrees 39'-48 degrees 36'W, SP, Brazil), the biomass of E. polystachya was monthly determined with eight quadrats of 0.25 m2 from August 1993 to July 1994. The seasonal variation in biomass was unimodal, with greater biomass from November 1993 to April 1994. The average biomass was 1,933.7 +/- 479.5 gDW.m-2, with a variation along the year from 1,149.0 to 2,755.9 gDW.m-2. The annual variation of aerial green biomass, aerial and aquatic detritus suggest that the main growth period of E. polystachya was from December 1993 to May 1994, with peak between February to March 1994. The data indicate that this macrophyte is adapted to water level variation.

Biomass↗
PubMed1996

Biomass accumulation in hydroponically grown sweetpotato in a controlled environment: a preliminary study.

In the development of a plant growth model, the assumptions made and the general equations representing an understanding of plant growth are gradually refined as more information is acquired through experimentation. One such experiment that contributed to sweetpotato model development consisted of measuring biomass accumulation of sweetpotato grown in hydroponic culture in a plant growth chamber. Plants were started from fifteen centimeter long 'TU-82-155' sweetpotato vine cuttings spaced 25 cm apart in each of 18 rectangular growing channels (0.15 by 0.15 by 1.2m) in a system designed to use the nutrient film technique (NFT). Each channel contained four plants. The 3.5m by 5.2m plant growth chamber environmental parameters included an 18h photoperiod, 500 micromoles m-2 s-1 of photosynthetic photon flux (PPF), and a diurnal light/dark temperature of 28 degrees C/22 degrees C. The relative humidity was 80 +/- 5% and the CO2 partial pressure was ambient (350 ppm). The nutrient solution contained in 30L reservoirs was a modified half Hoagland's solution with a 1:2.4 N:K ratio and a pH of 6.2. Solution replenishment occurred when the electrical conductivity (EC) level dropped below 1050. Plants were harvested at 15 days after planting (DAP) and weekly thereafter until day 134. By 57 DAP, stems and fibrous roots had acquired 90% of their total dry biomass, while leaves had reached 84% of their maximum dry biomass. Beginning at 64 DAP dry biomass accumulation in the storage roots dominated the increase in dry biomass for the plants. Dry weight of storage roots at 120 DAP was 165 g/plant or 1.1 kg/m2. Resulting growth curves were consistent with the physiological processes occurring in the plant. Results from this study will be incorporated in a plant growth model for use in conjunction with controlled life support systems for long-term manned space missions.

Biomass↗
PubMed2006

Effects of elevated atmospheric carbon dioxide on biomass and carbon accumulation in a model regenerating longleaf pine community.

Plant species vary in response to atmospheric CO2 concentration due to differences in physiology, morphology, phenology, and symbiotic relationships. These differences make it very difficult to predict how plant communities will respond to elevated CO2. Such information is critical to furthering our understanding of community and ecosystem responses to global climate change. To determine how a simple plant community might respond to elevated CO2, a model regenerating longleaf pine community composed of five species was exposed to two CO2 regimes (ambient, 365 micromol mol(-1) and elevated, 720 micromol mol(-1)) for 3 yr. Total above- and belowground biomass was 70 and 49% greater, respectively, in CO2-enriched plots. Carbon (C) content followed a response pattern similar to biomass, resulting in a significant increase of 13.8 Mg C ha(-1) under elevated CO2. Responses of individual species, however, varied. Longleaf pine (Pinus palustris Mill.) was primarily responsible for the positive response to CO2 enrichment. Wiregrass (Aristida stricta Michx.), rattlebox (Crotalaria rotundifolia Walt. Ex Gmel.), and butterfly weed (Asclepias tuberosa L.) exhibited negative above- and belowground biomass responses to elevated CO2, while sand post oak (Quercus margaretta Ashe) did not differ significantly between CO2 treatments. As with pine, C content followed patterns similar to biomass. Elevated CO2 resulted in alterations in community structure. Longleaf pine comprised 88% of total biomass in CO2-enriched plots, but only 76% in ambient plots. In contrast, wiregrass, rattlebox, and butterfly weed comprised 19% in ambient CO2 plots, but only 8% under high CO2. Therefore, while longleaf pine may perform well in a high CO2 world, other members of this community may not compete as well, which could alter community function. Effects of elevated CO2 on plant communities are complex, dynamic, and difficult to predict, clearly demonstrating the need for more research in this important area of global change science.

Atmosphere↗
PubMed2001

Microbial storage products, biomass density, and settling properties of enhanced biological phosphorus removal activated sludge.

The relationships between bacterial storage products, density, and settling characteristics were determined in a laboratory-scale sequencing batch reactor (SBR) enhanced biological phosphorus removal (EBPR) system. Both long-term and single anaerobic-aerobic cycle variations in these properties were studied. Increased polyphosphate (PP) content of the biomass during long-term operation resulted in improved sludge volume index (SVI) values. End-aerobic phase (after phosphate (P) uptake) SVI values were consistently lower than end-anaerobic phase (after P release) values. Neither filamentous nor slime bulking were evident by microscopic observations. Biomass density increased at a rate of 1.2 mg/L per each 1% increase in biomass P content. End-aerobic phase samples had an average 25% higher buoyant density than end-anaerobic phase samples; which was attributed to aerobic P uptake. Biomass density was negatively correlated with SVI values, and SVI values increased sharply at low biomass density. A mathematical model developed by Mas et al. (1985) was modified to predict total cell density based on literature values of PP, glycogen (GLY), and poly-b-hydroxybutyrate (PHB) densities. Model predictions were in good agreement with experimental results, although improved measurement of PP density is required to improve model predictions.

Bacteria, Aerobic↗
PubMed2001

On-line viable biomass measurement and estimation of the specific growth rate of activated sludge from municipal wastewater treatment.

In order to control wastewater processes, on-line measurements of important process variables are crucial. This contribution focuses on the applicability of the Biomass Monitor for on-line viable biomass measurement of activated sludge from a municipal wastewater plant. In addition, the specific growth rate of the sludge is estimated on-line, based on the information derived from the device under study. Compared to dry weight measurements, the Biomass Monitor hardware offers the advantage of a biologically more appropriate observation of the biomass by only taking into account the viable cells in the population. The optimal measurement frequency of the biomass monitoring device for the given experimental conditions has been determined. Furthermore, the capacitance readings have been correlated with off-line analyses of dry weight of the sludge during the experimental phase in which no death of cells occurred. Finally, an evaluation of the estimator of the specific growth rate including its tuning is presented.

Bacteria↗
PubMed2001

Combined effects of two sulfonylurea herbicides on soil microbial biomass and N-mineralization.

The interaction effect of two sulfonylurea herbicides, bensulfuron-methyl (B) and metsulfuron-methyl(M), were tested on microbial biomass C, N, N-mineralization and C/N ratio in a loamy sand soil. The herbicides were applied at various levels of: control (B0M0), 0.01 and 0.01 (B1M1), 0.01 and 0.1 (B1M2), and 0.01 and 1.0 (B1M3) microgram/g soil. Determinations of soil microbial biomass-C, N and N-mineralization contents were carried out at 1, 3, 5, 7, 10, 15, 25 and 45 days after herbicides application. The results showed that the soil microbial biomass-C (Cmic) and microbial biomass-N (Nmic) decreased consistently with the increasing rates of herbicides. The results further indicated that B1M1 and B1M2 caused a significant reduction in Cmic and Nmic within first 10 and 7 days of incubation, respectively, as compared with the control. These reductions in Cmic and Nmic were also significant (P = 0.05) with B1M3 application especially within first 15 days of incubation. A significant reduction in N-mineralization (N-min) was observed with high doses (B1M2, B1M3) of herbicides within first 5 days of incubation, while low rate (B1M1) failed to produce any significant effect. An increase in the soil microbial biomass C:N ratio was also noted.

Analysis of Variance↗
PubMed2001

Effectiveness of anaerobic biomass in adsorbing heavy metals.

This study focuses on the effectiveness of waste anaerobic dead biomass (ADB) in adsorbing heavy metals, namely Pb(II), Cr(VI), Cu(II), Ni(II) and Zn(II). The metal uptake capacity of ADB was investigated and compared with the values for various biomass types from the literature. The biomass, which was grown under laboratory conditions using a synthetic wastewater, was used throughout the study after sterilization. The maximum metal adsorptive capacities were evaluated by running isotherm tests at 25 degrees C and initial pH of 4. It was observed that Pb(II) was adsorbed with the highest capacity. The maximum adsorptive capacity of ADB for Pb(II), Zn(II), Cu(II), Ni(II) and Cr(VI) was determined as 1250, 625, 357, 227 and 384 mg/g dry biomass, respectively. These values were significantly higher than the corresponding capacities reported in the literature for other types of biomass. In describing the adsorption equilibrium, both the Langmuir and Freundlich isotherm models were examined. The experimental data for Pb(II), Zn(II), Cr(VI), and Ni(II) fitted both the Langmuir and Freundlich models with correlation coefficients of 0.80-0.99 while Cu(II) only fitted the Langmuir model with a correlation coefficient of 0.99. Therefore, different and distinct aspects of the interactions between the cell surfaces and the metal ions might have occurred for Cu(II) and the rest of the metals. The equilibrium pH values attained were all higher than the initial pH value of 4.0, and this indicated that both the type and the initial concentration of the metal influenced the equilibrium pH. Furthermore, there was a decrease in equilibrium pH with increasing initial metal concentration at varying levels.

Adsorption↗
PubMed2002

Biomass active fraction evaluated by a direct method and respirometric techniques.

The knowledge of the active biomass amount and its characterisation is of primary importance for the management and for the design of wastewater treatment plants on the basis of the recently developed models. OUR curves obtained in aerobic exponential growth tests are proposed by several authors as an indirect method to estimate the active fraction. The aim of this work is the application of a direct method to measure the viable biomass based on flow cytometry techniques and the comparison with the active fraction obtained from respirometric tests. To assess the viable fraction of a biomass expressed in terms of COD concentration it is necessary to estimate the biovolume of viable bacteria and to know the specific carbon content per cell. For the investigated activated sludge samples, the bacterial biomass measured by FCM was 588 mgCOD L(-1) on average in a two-months period. This value of active fraction corresponds to 14% of particulate COD. Active biomass values measured with the respirometric approach were consistent but generally higher than those obtained by FCM.

Biomass↗