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PubMed2005

Studies on nutrient uptake of rice and characteristics of soil microorganisms in a long-term fertilization experiments for irrigated rice.

The ecosystem characteristics of soil microorganism and the nutrient uptake of irrigated rice were investigated in a split-block experiment with different fertilization treatments, including control (no fertilizer application), PK, NK, NP, NPK fertilization, in the main block, and conventional rice and hybrid rice comparison, in the sub block. Average data of five treatments in five years indicated that the indigenous N supply (INS) capacity ranged from 32.72 to 93.21 kg/ha; that indigenous P supply (IPS) capacity ranged from 7.42 to 32.25 kg/ha; and that indigenous K supply (IKS) capacity ranged from 16.24 to 140.51 kg/ha, which showed that soil available nutrient pool depletion might occur very fast and that P, K deficiency has become a constraint to increasing yields of consecutive crops grown without fertilizer application. It was found that soil nutrient deficiency and unbalanced fertilization to rice crop had negative effect on the diversity of the microbial community and total microbial biomass in the soil. The long-term fertilizer experiment (LTFE) also showed that balanced application of N, P and K promoted microbial biomass growth and improvement of community composition. Unbalanced fertilization reduced microbial N and increased C/N ratio of the microbial biomass. Compared with inbred rice, hybrid rice behavior is characterized by physiological advantage in nutrient uptake and lower internal K use efficiency.

Agriculture↗
PubMed2001

Heavy metal and nutrient concentration in soil and plants growing on a metalliferous chromite minespoil.

Metal contamination in soil and plant samples from a chromite mine and its adjoining regions was determined. The metal concentration varied in stem, leaf and root of different tree species. In the case of shrubs, the highest concentration of iron (18.5 mg kg(-1) was detected in the stem of Combretum roxburghii. The concentration of aluminium varied from 1.8 - 5.3 mg kg(-1) dry weight, whereas the nickel content was found to be the highest in the stem of Calotropis gigantea. In the case of herbs, chromium concentration was highest (60.9 mg kg(-1) dry weight) in Evovulus alsenoides and the lowest (18.8 mg kg(-1) dry weight) in Andrographis paniculata. There was a significant correlation observed between chromium in soil with the root of tree species like Lagerstroemia parviflora, Madhuca longifolia, Anogeissus latifolia and Haldina cordyfolia. Nickel in soil was significantly correlated with the stem and leaf of all the tree species except Chlroxylon sweitenta. Iron in soil showed correlation with the stem and leaf of Chloroxylon sweitenia. Among the shrubs (Calotropis gigantea, Combretum roxburghii and Smilax zeylancia), chromium in soil showed a correlation with the root. Nickel in soil was positively correlated with the stem and leaf of Calotropis gigantea and Combretum roxburghii. Among the herbs, chromium in the whole plant of Evolvulus alsenoids, Solanum surattense and Phyllanthus fraternus showed significant positive correlation with soil; nickel in Solanum surattense showed significant positive correlation with soil. The positive correlation coefficient was observed between iron in the whole plant and soil on Phyllanthus virgatus, Phyllanthus fraternus and Andrographis paniculata. The above information would be useful for the establishment of a vegetation cover on the minewaste heaps.

Chromium↗
PubMed2005

Radiocarbon--a low-impact tool to study nutrient transport by soil fungi under field conditions.

Here, we present a new in-situ method to study the uptake of amino acids by soil fungi. We injected 14C-labeled glycine into a marshland soil and measured the rate and the 14C signature of CO2 respired from sporocarps of Pholiota terrestris over 53.5 h and 2 m. We also determined the incorporation of glycine-C into sporocarp tissue. The 14C signature of the CO2 and tissue was quantified by accelerator mass spectrometry. After the label application, the rate of CO2 flux and its 14C signature from chambers with sporocarps were significantly higher than from chambers without sporocarps, and then declined with time. Postlabel, the 14C signature of the sporocarp tissue increased by 35 per thousand. We show that this approach can be used to study below-ground food webs on an hourly time-scale while minimizing the perturbation of competitive relationships among soil microorganisms and between plants and soil microorganisms. Additionally we show that care must be taken to avoid confounding effects of sporocarp senescence on rates and radiocarbon signatures of respired CO2.

Biological Transport↗
PubMed2006

Natural variants of AtHKT1 enhance Na+ accumulation in two wild populations of Arabidopsis.

Plants are sessile and therefore have developed mechanisms to adapt to their environment, including the soil mineral nutrient composition. Ionomics is a developing functional genomic strategy designed to rapidly identify the genes and gene networks involved in regulating how plants acquire and accumulate these mineral nutrients from the soil. Here, we report on the coupling of high-throughput elemental profiling of shoot tissue from various Arabidopsis accessions with DNA microarray-based bulk segregant analysis and reverse genetics, for the rapid identification of genes from wild populations of Arabidopsis that are involved in regulating how plants acquire and accumulate Na(+) from the soil. Elemental profiling of shoot tissue from 12 different Arabidopsis accessions revealed that two coastal populations of Arabidopsis collected from Tossa del Mar, Spain, and Tsu, Japan (Ts-1 and Tsu-1, respectively), accumulate higher shoot levels of Na(+) than do Col-0 and other accessions. We identify AtHKT1, known to encode a Na(+) transporter, as being the causal locus driving elevated shoot Na(+) in both Ts-1 and Tsu-1. Furthermore, we establish that a deletion in a tandem repeat sequence approximately 5 kb upstream of AtHKT1 is responsible for the reduced root expression of AtHKT1 observed in these accessions. Reciprocal grafting experiments establish that this loss of AtHKT1 expression in roots is responsible for elevated shoot Na(+). Interestingly, and in contrast to the hkt1-1 null mutant, under NaCl stress conditions, this novel AtHKT1 allele not only does not confer NaCl sensitivity but also cosegregates with elevated NaCl tolerance. We also present all our elemental profiling data in a new open access ionomics database, the Purdue Ionomics Information Management System (PiiMS; http://www.purdue.edu/dp/ionomics). Using DNA microarray-based genotyping has allowed us to rapidly identify AtHKT1 as the casual locus driving the natural variation in shoot Na(+) accumulation we observed in Ts-1 and Tsu-1. Such an approach overcomes the limitations imposed by a lack of established genetic markers in most Arabidopsis accessions and opens up a vast and tractable source of natural variation for the identification of gene function not only in ionomics but also in many other biological processes.

Alleles↗
PubMed2000

[Rhizosphere effect of nutrients in different maize soils with different fertility levels].

Maize plants and soil samples were collected from Jilin Province to study the nutrient dynamics in soil-maize plant rhizosphere and their relationship with plant uptake. The results showed that NH4(+)-N and NO3(-)-N were accumulated in rhizospheric soil, and mainly controlled by the application of chemical fertilizers. Soil available P was depleted in high fertility fields, especially in high seedling density, while accumulated in low fertility fields. Soil available K was accumulated in rhizospheric soil, and its accumulation rate was higher in high fertility than in low fertility fields. The nutrient absorption amount was N approximately K > P for maize plant shoots and roots, but was N > K > P for seeds. The contribution rate of chemical fertilizers to maize yield was only 1/5-1/3 in Jilin Province, and the rest was contributed by the application of organic manure, such as chicken feces or cow feces, and by the mineralization of soil organic matter.

Biomass↗
PubMed2003

Runoff erosion and nutrient depletion in five Mediterranean soils of NE Spain under different land use.

We investigated the influence of agricultural management and various plant covers related to the period of abandonment on soil properties, erosion and nutrient depletion in a typical Mediterranean area with sandy loam shallow soils. Cultivated soils (CS) with insufficient management, 5 year abandoned soils covered with meadow (A5), 25 year abandoned soils covered with dense scrubs (A25), 50 year abandoned soils covered with cork trees (A50) and soils in a 50 year pine reforested area (P50) were studied over a period of 6 months (May-October 1999). The soils were classified as Lithic Xerorthents. Both the differences in soil properties and response to rainfall events were mainly attributed to the different vegetation types and stages in land management. Principal components analysis (PCA) was performed on the results, by running the overall data determined after five rainfall events. The factors extracted by PCA of the samples by variables matrix represented the response of the environments to different rainfall intensities as a function of management or natural evolution after abandonment. CS environments showed the highest runoff and sediment yield as well as the highest amount of dissolved organic carbon (DOC) and nitrogen in runoff water. The sequence of abandonment (A5, A25 and A50) showed approximately the same runoff production, whereas eroded sediments (ES) and DOC were inversely correlated. Organic carbon in the ES and DOC in runoff water always increased with the period of abandonment, which accounted for consistent nutrient depletion. Nevertheless, the A50 environment (dominated by Quercus suber) showed the best soil properties, whilst the A25 environment with dense cover of Cistus monspeliensis and Calicotome espinosa seemed to cause a worsening effect on the soil's physical and chemical properties. This is probably because these environments are more severely damaged by wild fire occurrence. In terms of sediment yield, the P50 environment followed CS environment, indicating that reforestation followed by insufficient forest management may negatively affect both soil properties and response to the erosive action of rainfall.

Agriculture↗
PubMed2002

Isolation and characterization of efficient isoxaben-transforming Microbacterium sp strains from four European soils.

Nutrient-agar plates containing isoxaben (500 mg litre(-1)) were used to isolate isoxaben-metabolising bacteria from four European soils incubated with the herbicide under laboratory conditions. In flask experiments, inoculation of a basal salts medium containing nitrogen and [phenyl-U-14C]isoxaben with an isolate (B2b) resulted in 33% recovery of the initial radioactivity as [14C]carbon dioxide after 2 weeks. A major metabolite identified by GC-MS and NMR analysis as 3-(1-ethyl-1-methylpropyl)isoxazol-5-ylamine accumulated both in basal salts and nutrient broth media. 2,6-Dimethoxybenzoic acid, a suspected metabolite of isoxaben, was not detected in either liquid media. However, the capability of the B2b isolate to use 2,6-dimethoxybenzoic acid as a source of carbon was demonstrated. Soil inoculation with the B2b strain resulted in an increase in the recovery of [14C] carbon dioxide from both [phenyl-U-14C] and [isoxazole-5-14C]isoxaben. The metabolite identified as 3-(1-ethyl-1-methylpropyl)isoxazole-5-ylamine only accumulated if the soil was autoclaved before inoculation. This metabolite was rapidly mineralized by the microflora of a natural soil without history of isoxaben treatment. Homology patterns of sequenced 16S rDNA between isoxaben-transforming isolates and reference strains showed that the four isolates identified belonged to the genus Microbacterium.

Bacteria↗
PubMed1975

Soil fungistasis: role of the microbial nutrient sink and of fungistatic substances in two soils.

Sensitivity of conidia of Cochliobolus victoriae to fungistasis decreased markedly following incubation on moist sand for at least 1 h. Germination was greater on Conover loam or on sand being leached with water than on an alkaline clay loam soil known to produce a volatile fungistatic substance. Evolution of 14CO2 began within 3 min after [14C]glucose was applied to the soils; the rate of 14CO2 evolution was faster with Conover loam. Germination of Thielaviopsis basicola conidia per unit of glucose remaining in agar discs initially containing 0-1% glucose, was lower for discs incubated on the clay loam soil than on Conover loam, and was greatest on a bed of sand undergoing aqueous leaching. Germination of ascospores of Neurospora tetrasperma and conidia of C. victoriae was suppressed on discs of washed, Purified Agar or polyacrylamide gel incubated on or over the clay loam soil, but no suppression resulted when discs were incubated on Conover loam. Extensive aeration of either soil did not remove its fungistatic effect. Fungistasis in Conover loam appears to be caused primarily by nutrient deprivation, whereas volatile fungistatic substances may play a major role in the clay loam soil.

Antifungal Agents↗
PubMed2004

Regional scale nutrient modelling: exports to the Great Barrier Reef World Heritage Area.

Clearing of native vegetation and replacement with cropping and grazing systems has increased nutrient exports to the Great Barrier Reef (GBR) to a level many times the natural rate. We present a technique for modelling nutrient transport, based on material budgets of river systems, and use it to identify the patterns and sources of nutrients exported. The outputs of the model can then be used to help prioritise catchment areas and land uses for management and assess various management options. Hillslope erosion is the largest source of particulate nutrients because of its dominance as a sediment source and the higher nutrient concentrations on surface soils. Dissolved nutrient fractions contribute 30% of total nitrogen and 15% of total phosphorus inputs. Spatial patterns show the elevated dissolved inorganic nitrogen export in the wetter catchments, and the dominance of particulate N and P from soil erosion in coastal areas. This study has identified catchments with high levels of contribution to exports and targeting these should be a priority.

Agriculture↗
PubMed2002

[Eco-environment and nutrient accumulation of sharptooth oak stands in southern slope of Mt. Qinling].

Based on the date from chemical analysis of 10,785 botanical and 1489 edaphic samples, the amount of nutrients accumulated in soil layer (0-60 cm) of sharptooth oak stands, the total biomass of the stands and their contents of accumulated nutrients, and the amount of litter and its contents of accumulated nutrients in southern slope of Mt. Qinling were calculated. To a certain extent, the biomass and the nutrient accumulation of the stands were increased with stand densities and stand ages from thin to high or from young to old, similar to the utilization efficiency of the stands to soil nutrient elements and the trunk canopy ratio. The tree composition of the stands much more influenced nutrient accumulation contents than the biomass. The more broad-leaved tree of species composition, the higher nutrient accumulation contents of stands. In the same region biomass and its nutrient contents of the stands with similar site factors and stand factors had not remarkably difference among different forest-types, but had a difference among various forest types and species composition. In different region, biomass and its nutrient contents of the stands with similar site factors and stand factors had a difference with the sequence of south slope > north slope, middle section > east section or west section. The utilization efficiency of soil nutrient elements by the stands was decreased from lower to higher elevation, from the south to north slope, from middle to east and west section.

Environment↗
PubMed2001

Effects of Elevated Carbon Dioxide and Nitrogen Fertilization on Mycorrhizal Fine Roots and the Soil Microbial Community in Beech-Spruce Ecosystems on Siliceous and Calcareous Soil.

To study the responses of forests to global change, model ecosystems consisting of beech and spruce trees were maintained in open top chambers for 4 years under four conditions, namely with normal and elevated CO2 and with low and high nitrogen input, each replicated four times. Each open top chamber (height 3 m, diameter 3 m, soil depth 1.5 m) contained two separate soil compartments containing nutrient-poor siliceous and nutrient-rich calcareous soil. Here, we focus on the fine roots and the soil microbial community in these model ecosystems. At the time of planting, the fine roots were cut back according to forestry practice, and the newly formed roots were colonized by the indigenous soil microflora. After 4 years, the total biomass of fine roots, when averaged over all treatments, was almost the same in each of the two soil types; it was highest in the top 100 mm of soil (60%) and decreased sharply in deeper soil layers. Fungal biomass associated with the fine roots, consisting mainly of ectomycorrhizal fungi, was estimated using the ergosterol content as a marker. It was much higher in fine roots in the siliceous than in the calcareous soil, indicating considerably enhanced ectomycorrhiza formation in the nutrient-poor siliceous soil. Elevated atmospheric CO2 stimulated fine root production by ca. 85% and 43% in the top 100 mm of calcareous and siliceous soils respectively. Increased nitrogen input caused a slightly reduced production of fine root biomass in the calcareous soil but increased it by 33% in the siliceous soil. Marker substances for microorganisms were analyzed in the root-free soil. The amounts of carbon released by fumigation/extraction (a general marker for microbial biomass) and chitin (a marker for fungal biomass) were significantly higher in the top layer of the siliceous than of the calcareous soil, but they did not respond significantly to the treatments with elevated CO2 or the nitrogen fertilizer. The total concentration of the phospholipid fatty acids (PLFAs) and the number of the PLFAs did not differ between the two soil types. However, four of the eight most abundant PLFAs differed significantly between the two soil types. Principal component analysis revealed clearly separated clusters for the two soil types. Although analysis did not reveal any significant changes in response to the treatments, the concentration of the PLFA typical for ectomycorrhizal fungi was significantly higher under conditions of elevated CO2 in the nutrient-rich calcareous soil.

Journal Article↗
PubMedDate not supplied

Modification to the AOAC Sporicidal Activity of Disinfectants Test (Method 966.04): collaborative study.

In an effort to improve AOAC Method 966.04, the Sporicidal Activity of Disinfectants Test, selected modifications to the procedure were evaluated in a collaborative study. Method 966.04 is used to generate efficacy data to support the product registration of sporicides and sterilants. The method is a carrier-based test that provides a qualitative measure of product efficacy against spores of Bacillus subtilis and Clostridium sporogenes. The use of garden soil extract and the lack of standard procedures for the enumeration of spores and neutralization of the test chemicals have been considered problematic for many years. The proposed modifications were limited to the B. subtilis and hard surface carrier (porcelain penicylinder) components of the method. The study included the evaluation of a replacement for soil extract nutrient broth and an establishment of a minimum spore titer per carrier, both considered crucial for the improvement and utilization of the method. Additionally, an alternative hard surface material and a neutralization confirmation procedure were evaluated. To determine the equivalence of the proposed alternatives to the standard method, 3 medium/carrier combinations, (1) soil extract nutrient broth/porcelain carrier (current method), (2) nutrient agar amended with 5 microg/mL manganese sulfate/porcelain carrier, and (3) nutrient agar amended with 5 microg/mL manganese sulfate/stainless steel carrier were analyzed for carrier counts, HCI resistance, efficacy, quantitative efficacy, and spore wash-off. The test chemicals used in the study represent 3 chemical classes and are commercially available antimicrobial liquid products: sodium hypochlorite (bleach), glutaraldehyde, and a combination of peracetic acid and hydrogen peroxide. Four laboratories participated in the study. The results of the spore titer per carrier, HCI resistance, efficacy, and wash-off studies demonstrate that amended nutrient agar in conjunction with the porcelain is comparable to the current method, soil extract nutrient broth/porcelain. The nutrient agar method is simple, inexpensive, reproducible, and provides an ample supply of high quality spores. Due to the current use of porcelain carriers for testing C. sporogenes, it is advisable to retain the use of porcelain carriers until stainless steel can be evaluated as a replacement carrier material for Clostridium. The evaluation of stainless steel for Clostridium has been initiated by the Study Director. Study Director recommendations for First Action revisions are provided in a modified method.

Bacillus subtilis↗
PubMed1993

Metal accumulation in soil arthropods in relation to micro-nutrients.

Nine species of soil arthropod collected at two sites of different pollution levels were compared for concentrations of seven different elements (Ca, Cd, Cu, Fe, Mn, Pb, Zn) and correlations between the different elements were calculated. Significant effects of site on element concentrations of the animals were found for cadmium, iron, manganese and zinc, whereas calcium, copper and lead concentrations showed no significant difference between the sites. Significant differences between the species were found for all metal. The pattern of accumulation was comparable for some of the metals. Correlations were found between calcium, iron, manganese and lead concentrations and between zinc and cadmium concentrations of the species. No significant correlations were found for copper. The study showed that species can not be easily categorised as accumulators or non-accumulators; the pattern depends on the metal.

Journal Article↗
PubMed2004

Effect of interactions on the nutrient status of a tropical soil treated with green manures and inorganic phosphate fertilizers.

Integrated nutrient management systems using plant residues and inorganic P fertilizers have high potential for increasing crop production and ensuring sustainability in the tropics, but their adoption requires in-depth understanding of nutrient dynamics in such systems. This was examined in a highly weathered tropical soil treated with green manures (GMs) and P fertilizers in two experiments conducted in the laboratory and glasshouse. The treatments were factorial combinations of the GMs (Calopogonium caeruleum, Gliricidia sepium, and Imperata cylindrica) and P fertilizers (phosphate rocks [PRs] from North Carolina, China, and Algeria, and triple superphosphate) replicated thrice. Olsen P, mineral N, pH, and exchangeable K, Ca, and Mg were monitored in a laboratory incubation study for 16 months. The change in soil P fractions and available P was also determined at the end of the study. Phosphorus available from the amendments was quantified at monthly intervals for 5 months by 33P-32P double isotopic labeling in the glasshouse using Setaria sphacelata as test crop. The GMs were labeled with 33P to determine their contribution to P taken up by Setaria, while that from the P fertilizers was indirectly measured by labeling the soil with 32P. The P fertilizers hardly changed Olsen P and exchangeable cations during 16 months of incubation. The legume GMs and legume GM+P did not change Olsen P, lowered exchangeable Ca, and increased exchangeable K about threefold (4.5 cmol[+]kg(-1) soil) in the first 4 months, even as large amounts of NH4-N accumulated (approximately 1000 mg kg soil(-1)) and soil pH increased to more than 6.5. Afterwards, Olsen P and exchangeable Ca and Mg increased (threefold) as NH4+-N and soil pH declined. The legume GMs also augmented reversibly sorbed P in Al-P and Fe-P fractions resulting in high residual effect in the soil, while fertilizer-P was irreversibly retained. The GMs increased PR-P utilization by 40 to over 80%, mobilized soil P, and markedly enhanced uptake of N, K, Ca, and Mg. Thus GMs+PRs is an appropriate combination for correcting nutrient deficiencies in tropical soils.

Agriculture↗