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PubMed1993

Effect of initial breeding weight and management system using a high-producing sow genotype on resulting reproductive performance over three parities.

A study was conducted with sows of a high-producing genotype to evaluate their reproductive performance using three breeding weights over a three-parity period in two management systems. A total of 114 F1 gilts (Landrace x Yorkshire) were used in a split-plot, randomized, complete block experiment conducted as a 3 x 2 factorial arrangement of treatments in two replicates. Three gilt breeding weights of 120, 135, and 150 kg were achieved by feeding 1.8, 2.3, or 3.2 kg/d of a .73% lysine corn-soybean meal (C-SBM) diet, respectively, from 5 to 8 mo of age. Two locations, each with different management systems, were considered the main plot and consisted of 1) outside, concrete-floored gestation lots and indoor farrowing pens or 2) indoor gestation pens and farrowing crates. All sows were fed 1.8 (Parity 1) or 2.1 (Parity 2 and 3) kg/d of a .73% lysine C-SBM diet during the breeding and gestation periods, whereas a .82% lysine C-SBM diet with 5% added fat was available ad libitum during lactation. All sows lost weight during the first lactation; larger weight losses occurred as breeding weight increased (P < .01). During the second and third lactations the 135- and 150-kg sow breeding groups had less lactation weight change, whereas the 120-kg group lost more weight, resulting in a breeding weight x parity interaction (P < .01). The 120-kg breeding weight group consumed less feed (P < .05) for the three lactation periods than did the heavier weight groups. Initial breeding weight had no effect on number of pigs born (total, live) or pig and litter weights at birth. Pig mortality increased with increasing breeding weight (P < .01) and parity (P < .05), a response that was exacerbated when sows farrowed in pens vs crates. Postweaning breeding intervals and sow removal from the experiment were not significantly affected by initial breeding weight, but a numerically higher percentage of sows in the 120-kg group were anestrous or failed to conceive than the percentage of such sows in the heavier weight groups. These data suggest that an initial breeding weight of approximately 135 kg at 8 mo of age may be best when sows farrow in crates, whereas when sows farrow in pens a lower breeding weight may be more desirable.

Adipose Tissue↗
PubMed2026

Genome-Wide Differentiation, Inbreeding, and Candidate Selection Loci in Local Vietnamese Pig Breeds.

Vietnam harbors exceptional genetic diversity among at least 26 indigenous pig breeds. We analyzed genome-wide single-nucleotide polymorphism (SNP) data from 90 animals representing 15 local Vietnamese breeds and six Landrace pigs using principal component analysis, the windowed fixation index (FST), cross-population extended haplotype homozygosity (XP-EHH), within-population integrated haplotype score (iHS), and runs of homozygosity (ROHs). The population structure was consistent with a north-south differentiation axis, and Ba Xuyen showed elevated heterozygosity, providing suggestive evidence of a European genetic contribution; the f3 statistic was positive (f3 = +0.015), and formal evidence of admixture requires a significantly negative f3, so this criterion was not met. Integration of FST and XP-EHH identified GPC5, E2F6, NOS1, and TLR4 as top Northern candidate loci and CRYM/ZP2 as the leading Central candidate locus, and these windows were recovered at both the 90th and 95th percentile thresholds, indicating analytical robustness rather than independent biological validation. iHS was elevated at E2F6 in Northern breeds (|iHS| = 3.04) and at NOS1 across all regional groups (|iHS| = 2.66-3.36). Breed-level phenotypic XP-EHH, based on published breed descriptions and coat color rather than individual body-composition measurements, identified GALNT2 as a candidate shared across breed groups; HCAR1 and ATG10 as candidates specific to the extreme-fat/prolific breed group; and EFNA5 and HIPK2 as candidates specific to the medium-bodied breed group. ROHs identified Soc, Co, and Hung as breeds warranting particular attention in conservation planning due to elevated autozygosity. Because each breed was represented by only six individuals, and because no individual-level phenotypic measurements were available, all findings are reported as exploratory population-genomic signals requiring replication in larger cohorts. Overall, we describe genomic differentiation and candidate selection signatures among local Vietnamese pig breeds and provide a foundation for further genomic studies of these breeds.

Animals↗
PubMed2006

Evaluation of a contract breeding management program in selected Ohio dairy herds with event-time analysis I. Cox proportional hazards models.

An observational study was conducted in order to assess the impact of a contract breeding program on the reproductive performance in a selected group of Ohio dairies using event-time analysis. The contract breeding program was offered by a breeding co-operative and featured tail chalking and daily evaluation of cows for insemination by co-operative technicians. Dairy employees no longer handled estrus detection activities. Between early 2002 and mid-2004, test-day records related to production and reproduction were obtained for 16,453 lactations representing 11,398 cows in a non-random sample of 31 dairies identified as well-managed client herds of the breeding co-operative. Of the 31 herds, 15 were using the contract breeding at the start of the data acquisition period, having started in the previous 2 years. The remaining 16 herds managed their own breeding program and used the co-operative for semen purchase. Cox proportional hazards modeling techniques were used to estimate the association of the contract breeding, as well as the effect of other significant predictors, with the hazard of pregnancy. Two separate Cox models were developed and compared: one that only considered fixed covariates and a second that included both fixed and time-varying covariates. Estimates of effects were expressed as the hazard ratio (HR) for pregnancy. Results of the fixed covariates model indicated that, controlling for breed, herd size, use of ovulation synchronization protocols in the herd, whether somatic cell score exceeded 4.5 prior to pregnancy or censoring, parity, calving season, and maximum test-day milk prior to pregnancy or censoring, the contract breeding program was associated with an increased hazard of pregnancy (HR=1.315; 95% CI 1.261-1.371). The results of the time-varying covariates model, which controlled for breed, herd size, use of ovulation synchronization protocols, somatic cell score above 4.5, parity, calving season, and testing season also found that the program was associated with an increased hazard of pregnancy (HR=1.387; 95% CI 1.327-1.451). The fixed and time-varying covariates models both found similar sets of predictors when analyzing the association of the contract breeding program with hazard of pregnancy. Both models identified a 30% or greater increase in hazard of pregnancy associated with use of the contract breeding program, suggesting that herds subscribing to the program achieved pregnancies in a more timely fashion.

Animals↗
PubMed2002

PrP genotyping of Austrian sheep breeds.

Scrapie, an ovine and caprine transmissible spongiforme encephalopathy, is widely spread among sheep populations in many European countries. As it is known that susceptibility to scrapie is determined genetically, breeding programmes aiming at providing scrapie-resistant flocks have been established. Selection is based on the prion protein (PrP) genotype, which is used to classify animals into risk groups of susceptibility (R1-R5) according to the amino acids encoded by codons at positions 136, 154 and 171, respectively. At position 136 (136V-->136A) alanine and at position 154 (154H-->154R) as well as 171 (171Q-->171R) arginine are the favoured amino acids. Whereas PrP genotyping data are available for many of the European sheep breeds, comparable data for local Austrian sheep breeds are missing. The most known among these are Tyrolean mountain sheep, forest sheep. Tyrolean stone sheep and Carynthian sheep. The genotypes of 112 sheep from these four local breeds were determined. In terms of PrP genetics, Austrian breeds belong to the group of non-valine-breeds, with the exception of the Carynthian sheep, that exhibited a frequency of 136V of 4.2%. The most frequent allele was ARQ with 64.6-71.2% (depending on the breed), followed by ARR (14.8-25.8%). In contrast to the above-mentioned findings, scrapie has never been diagnosed in any of the Austrian sheep breeds. Native Austrian sheep breeds exhibit a very robust constitution, a pronounced adaptation to harsh climates and good reproduction parameters as well as a marked mother instinct. Therefore, these breeds are often used in crossbreeding programmes. Beside the above-mentioned characteristics, our results indicate that the investigated breeds may be effectively used in crossing-out breeding programmes for eliminating valine at position 136 of PrP.

Animal Husbandry↗
PubMed2001

Uncertain breeding: a short history of reproduction in monotremes.

Although much is known about the biology of monotremes, many important aspects of their reproduction remain unclear. Studies over the last century have provided valuable information on various aspects of monotreme reproduction including the structure and function of their reproductive system, breeding behaviour, sex determination and seasonality. All three living genera of monotremes have been successfully maintained in captivity, often for long periods, yet breeding has been rare and unpredictable. When breeding has occurred, however, significant gains in knowledge have ensued; for example a more accurate estimate of the gestation period of the platypus and the incubation period for the Tachyglossus egg. One of the great challenges for zoos has been to understand why breeding of monotremes is difficult to achieve. Analysis of breeding successes of platypuses and short-beaked echidnas provides some insights. The evidence suggests that although annual breeding seasons are regionally predictable, individual adult females breed unpredictably, with some showing breeding intervals of many years. The reason for this variation in individual breeding intervals may be resource-dependant, influenced by social factors or may even be genetically induced. Better knowledge of factors that influence breeding intervals may improve the success of monotreme captive breeding programmes. More certainty in captive breeding is also an important issue for enterprises wishing to trade in Australian wildlife since current legislation limits export of Australian fauna for display to at least second-generation captive-bred individuals. Given their unique evolutionary position, knowledge of reproduction in monotremes needs to be gained in advance of any future population declines so that appropriate strategies can be developed to ensure their survival.

Animals↗
PubMed2005

Genetic diversity within and among four South European native horse breeds based on microsatellite DNA analysis: implications for conservation.

In the present study, genetic analyses of diversity and differentiation were performed on four Basque-Navarrese semiferal native horse breeds. In total, 417 animals were genotyped for 12 microsatellite markers. Mean heterozygosity was higher than in other horse breeds, surely as a consequence of management. Although the population size of some of these breeds has declined appreciably in the past century, no genetic bottleneck was detected in any of the breeds, possibly because it was not narrow enough to be detectable. In the phylogenetic tree, the Jaca Navarra breed was very similar to the Pottoka, but appeared to stand in an intermediate position between this and the meat breeds. Assuming that Pottoka is the breed less affected by admixture, the others gradually distanced themselves from it through varying influences from outside breeds, among other factors. In a comparative study with other breeds, the French breeds Ardanais, Comtois, and Breton were the closest to the four native breeds. Three different approaches for evaluating the distribution of genetic diversity were applied. The high intrabreed variability of Euskal Herriko Mendiko Zaldia (EHMZ) was pointed out in these analyses. In our opinion, cultural, economic, and scientific factors should also be considered in the management of these horse breeds.

Animals↗
PubMed2006

Assessing genetic diversity in indigenous Veneto chicken breeds using AFLP markers.

Genetic variation in four indigenous chicken breeds from the Veneto region of Italy was assessed using amplified fragment length polymorphism (AFLP) markers. A total of 99 individuals were analysed using three AFLP primer combinations that produced 70 polymorphisms. Four indigenous Veneto chicken breeds (Ermellinata, Padovana, Pépoi and Robusta) and a reference broiler line were included in the analysis. Breed-specific markers were identified in each breed. The expected heterozygosity did not differ significantly among the indigenous Veneto chicken breeds and the broiler line. The coefficient of gene variation (Gst) value across loci indicated that almost half of the total variability was observed among breeds. Nei's standard genetic distance between pairs of breeds showed that the distance between the broiler line and the Pépoi breed was greater than the distances between the broiler line and the other three chicken breeds. Cluster analysis based on standard genetic distances between breeds indicated that the Padovana and Pépoi breeds were closely related. Factorial analysis based on a binary matrix of the AFLP data showed a clear distinction of all breeds.

Animals↗
PubMed2006

Developments in European horse breeding and consequences for veterinarians in equine reproduction.

The liberalization of European animal breeding legislation and an increasing diversity of equestrian sports have led to a constant rise in the number of horse breeds and breed registries. In addition to the trend towards more and smaller breed registries, there is another trend towards an international expansion of the bigger established sport horse breeds. Regional breeds, at least in smaller countries, may no longer be able to run an independent breeding programme. The typical horse breeder, in the future, will be a female and qualified in equestrian sports. Artificial insemination (AI) mainly with fresh or cooled-transported semen has become a major breeding tool, allowing breeders all over Europe to benefit from the best stallions of most breeds. New AI techniques such as low-dose insemination may remain restricted to individual stallions and also the interest of breeding programmes in sex determination of foals via semen sorting is limited. Embryo transfer and associated techniques, although allowed by most breeds, have not contributed significantly to genetic progress in European sport horses so far. A potential use of cloning may be to produce gonad-intact copies from geldings that have performed to a superior level. With a more open and international structure of horse breeding and increased use of AI, equine reproduction and biotechnology should be emphasized by veterinary curricula and continuing professional education programmes.

Animals↗
PubMed2006

Prioritization for conservation of northern European cattle breeds based on analysis of microsatellite data.

Northern European indigenous cattle breeds are currently endangered and at a risk of becoming extinct. We analyzed variation at 20 microsatellite loci in 23 indigenous, 3 old imported, and 9 modern commercial cattle breeds that are presently distributed in northern Europe. We measured the breeds' allelic richness and heterozygosity, and studied their genetic relationships with a neighbor-joining tree based on the Chord genetic distance matrix. We used the Weitzman approach and the core set diversity measure of Eding et al. (2002) to quantify the contribution of each breed to the maximum amount of genetic diversity and to identify breeds important for the conservation of genetic diversity. We defined 11 breeds as a "safe set" of breeds (not endangered) and estimated a reduction in genetic diversity if all nonsafe (endangered) breeds were lost. We then calculated the increase in genetic diversity by adding one by one each of the nonsafe breeds to the safe set (the safe-set-plus-one approach). The neighbor-joining tree grouped the northern European cattle breeds into Black-and-White type, Baltic Red, and Nordic cattle groups. Väne cattle, Bohus Poll, and Danish Jersey had the highest relative contribution to the maximum amount of genetic diversity when the diversity was quantified by the Weitzman diversity measure. These breeds not only showed phylogenetic distinctiveness but also low within-population variation. When the Eding et al. method was applied, Eastern Finncattle and Lithuanian White Backed cattle contributed most of the genetic variation. If the loss of the nonsafe set of breeds happens, the reduction in genetic diversity would be substantial (72%) based on the Weitzman approach, but relatively small (1.81%) based on the Eding et al. method. The safe set contained only 66% of the observed microsatellite alleles. The safe-set-plus-one approach indicated that Bohus Poll and Väne cattle contributed most to the Weitzman diversity, whereas the Eastern Finncattle contribution was the highest according to the Eding et al. method. Our results indicate that both methods of Weitzman and Eding et al. recognize the importance of local populations as a valuable resource of genetic variation.

Animals↗
PubMed1995

Effect of accounting for different phenotypic variances by sire breed and sex on selection of sires based on expected progeny differences for 200- and 365-day weights.

The effects of accounting for different phenotypic variances according to sire breed and sex subclasses on estimation of sire breed effects and prediction of expected progeny differences of sires mated to Hereford and Angus cows were investigated. Data consisted of 6,977 and 6,530 records of 200-d (weaning) and 365-d (yearling) weights, respectively, of F1 calves sired by bulls (662 and 661, respectively) of 23 breeds that have been evaluated in the Germ Plasm Evaluation Program at the U.S. Meat Animal Research Center, Clay Center, NE. Models compared included fixed effects of genetic group of sire (samples of sires evaluated at different times), dam breed, sex, birth year of calf and age of dam, plus sire within genetic group and dam within dam breed as random effects. Variance structures were different: Model I assumed homogeneous variances across sire breed-sex subclasses; Model II accounted for differences in phenotypic variance by sire breed and sex subclasses. Differences between estimates of sire group effects obtained with the two models were not significant for either trait. Product-moment and rank correlations between expected progeny differences obtained with Model I and Model II were greater than .93 when computed within each group and .99 or larger when computed across breeds. There were slight changes in the numbers of sires contributed by different breeds to the proportions selected across breeds under different selection intensities when sires were ranked with the two models. However, differences between means predicted under Model II were small when sires were ranked and selected based on the two models. Changes in standard errors of prediction for expected progeny differences and standard errors for estimates of breed effects obtained when adjusting for differences of phenotypic variances, compared to not adjusting, were proportional to the ratios of the phenotypic standard deviations of the sire breeds to the common phenotypic standard deviation.

Animals↗
PubMed1997

Postweaning growth and reproduction characteristics of heifers sired by bulls of seven breeds and raised on different levels of nutrition.

Heifers produced from sires of seven breeds (Hereford, Angus, Belgian Blue, Piedmontese, Brahman, Boran, and Tuli) and Angus, Hereford, and MARC III (four-breed composite) cows were evaluated. Weaned heifers were placed in three treatment groups of moderate nutrition (15.8 Mcal ME/d), 80% of moderate nutrition (12.6 Mcal ME/d), or fed as a mixed-breed group (16.3 Mcal ME/d). Average daily gain (ADG) from 228 d of age through breeding was measured. There was a sire breed x group interaction (P < .0001) for ADG in the drylot. Sire breeds differed in their 365-d BW (P < .0001), and 365-d BW of heifers in the low group (315 +/- 4 kg) were lighter (P < .0001) than those of heifers in the high group (346 +/- 4 kg). During breeding, heifers that had been in the low group in the drylot had a higher ADG (.58 +/- .02 kg/d) than heifers in the high group (.39 +/- .03 kg/d). Age of heifers at puberty did not differ (P = .06) between the low (362 +/- 5 d) and high groups (357 +/- 5 d). Heifers from MARC III (358 +/- 5 d) and Angus (358 +/- 6 d) dams reached puberty at a younger age than did heifers with Hereford dams (380 +/- 9 d). Age at which puberty was expressed differed with sire breed (P < .001). The proportion of heifers that were pregnant at palpation (.90) did not differ between sire breeds (P = .24), dam breeds (P = .40), or group (P = .56). Breed differences in postweaning ADG and in the manner in which the population expresses puberty allow for selection of breed types that will optimize cow herd performance.

Aging↗
PubMed2001

Synthesis of direct and maternal genetic components of economically important traits from beef breed-cross evaluations.

Published information on relative performance of beef breed crosses was used to derive combined estimates of purebred breed values for predominant temperate beef breeds. The sources of information were largely from the United States, Canada, and New Zealand, although some European estimates were also included. Emphasis was on maternal traits of potential economic importance to the suckler beef production system, but some postweaning traits were also considered. The estimates were taken from comparison studies undertaken in the 1970s, 1980s and 1990s, each with representative samples of beef breeds used in temperate agriculture. Weighting factors for breed-cross estimates were derived using the number of sires and offspring that contributed to that estimate. These weights were then used in a weighted multiple regression analysis to obtain single purebred breed effects. Both direct additive and maternal additive genetic effects were estimated for preweaning traits. Important genetic differences between the breeds were shown for many of the traits. Significant regression coefficients were estimated for the effect of mature weight on calving ease, both maternal and direct additive genetic, survival to weaning direct, and birth weight direct. The breeds with greater mature weight were found to have greater maternal genetic effects for calving ease but negative direct genetic effects on calving ease. A negative effect of mature weight on the direct genetic effect of survival to weaning was observed. A cluster analysis was done using 17 breeds for which information existed on nine maternal traits. Regression was used to predict breed-cross-specific heterosis using genetic distance. Only five traits, birth weight, survival to weaning, cow fertility, and preweaning and postweaning growth rate had enough breed-cross-specific heterosis estimates to develop a prediction model. The breed biological values estimated provide a basis to predict the biological value of crossbred suckler cows and their offspring.

Animals↗
PubMed2005

Evaluation of Dorset, Finnsheep, Romanov, Texel, and Montadale breeds of sheep: V. Reproduction of F1 ewes in spring mating seasons.

Objectives were to estimate effects of sire breed (Dorset, Finnsheep, Romanov, Texel, and Montadale), dam breed [Composite III (CIII) and northwestern whiteface (WF)], mating season (March and May), and their interactions on reproductive traits of mature F1 ewes in spring mating seasons. A total of 1,099 F1 ewes produced 1,754 litters of 2,995 lambs from exposures to Suffolk rams during March and May mating seasons in 1995 through 1999. Fertility rate and ewe longevity were measured. Number born and litter birth weight were recorded, and number and weight at weaning and 20 wk of age were analyzed separately for dam- and nursery-reared litter mates. Total productivity from 4 to 6 yr of age for each ewe entering the breeding flock was calculated as the sum of 20-wk weights for dam-reared lambs and separately for nursery-reared lambs. Interactions of sire breed x mating season, ewe age x mating season, and ewe age x dam breed were often significant. Interactive effects of sire breed and mating season on fertility rate (P < 0.001) were primarily due to differences in magnitude. Fertility rates of sire breeds for March and May matings, respectively, were 92 and 89% for Romanov, 91 and 72% for Finnsheep, 90 and 52% for Texel, 88 and 52% for Montadale, and 83 and 62% for Dorset. Sire breed x mating season also affected number born (P < 0.03); March and May values were 2.12 and 2.05 for Romanov, 2.00 and 1.94 for Finnsheep, 1.39 and 1.41 for Texel, 1.37 and 1.51 for Montadale, and 1.37 and 1.55 for Dorset, respectively. Interaction of sire breed x dam breed on fertility rate (P < 0.01) was due to change in rank as well as magnitude. Romanov- and Dorset-sired ewes out of CIII dams had greater fertility rates than Romanov- and Dorset-sired ewes out of WF dams. The opposite situation existed for ewes by Finnsheep, Texel, and Montadale sires. Differences between dam breeds (CIII and WF) in total productivity of dam-reared lambs were not detected, whereas ewes exposed in March (78 kg) were more productive (P < 0.01) than those exposed in May (68 kg). Means of sire breeds for total productivity of dam-reared lambs were 47, 65, 70, 70, and 111 kg for Texel, Montadale, Dorset, Finnsheep, and Romanov, respectively (P < 0.001). Superior reproduction of Romanov sired ewes was primarily due to greater fertility rate and prolificacy at each mating season and ewe age. Use of Romanov-crossbred ewes would increase fertility during spring mating, an important constraint of the sheep industry.

Aging↗
PubMed2005

Effects of varying energy intake and sire breed on duration of postpartum anestrus, insulin like growth factor-1, and growth hormone in mature crossbred cows.

Objectives of this study were to evaluate effects of seven sire breed groups and three levels of daily ME intake (DMEI = 132 or 189 kcal ME/kg BW(0.75) or ad libitum), beginning 5 mo prepartum, on BCS, length of postpartum anestrus, and circulating concentrations of IGF-1 and GH in F1 cows (six to eight cows per sire breed in each DMEI group) out of Angus or Hereford dams. At the initiation of the study, BW were 522, 530, 548, 572, 575, 577, and 595 kg for cows sired by Longhorn, Galloway, 1960s Hereford or Angus, 1980s Hereford or Angus, or Nellore, Salers, and Shorthorn bulls, respectively (SE = 13; P < 0.001 for sire breed). After 4 mo on DMEI treatment during the pre-partum period, cows fed 132 kcal of ME/kg BW(0.75)gained little to no BW; cows fed 189 kcal ME/kg BW(0.75) gained 50 kg; and cows fed ad libitum gained 70 kg (all groups differ P < 0.05). Concentrations of progesterone in weekly blood samples collected 2 to 14 wk after calving were used to establish when normal luteal function resumed to predict length of postpartum anestrus. Length of anestrus was affected by level of DMEI in cows sired by Galloway, Longhorn, and Nellore bulls, but not other breeds (P < 0.02 for interaction of sire breed and DMEI). Level of DMEI, but not sire breed, affected (P < 0.01) BCS at wk 2 postpartum. Concentrations of IGF-1 at wk 2 postpartum differed (P < 0.001) due to sire breed, and changes in concentrations of IGF-1 from wk 2 to 14 were influenced (P < 0.03) by the interaction of sire breed and level of DMEI; which was primarily the result of differences in rate of decrease over time among different sire breed x level of DMEI groupings. Concentrations of GH did not differ due to sire breed but varied (P < 0.001) due to the interaction of DMEI and week postpartum, for which concentrations of GH did not differ at wk 2 but increased over time at rates that were inversely proportional to level of DMEI. Length of anestrus was negatively associated (P < 0.05) with day of calving, BCS, and BW. When effects of sire breed and level of DMEI were accounted for (residual correlation), length of anestrus was inversely associated (P < 0.01) with IGF-1 concentrations. Breed of sire influenced length of postpartum anestrus and energy balance, as predicted by IGF-1, in crossbred cows fed varying levels of DMEI.

Anestrus↗
PubMed2006

Comparison of Vietnamese and European pig breeds using microsatellites.

This study characterized autochthonous pig breeds of Vietnam and compared them with breeds from other regions. A total of 343 animals were considered from 5 indigenous pig breeds of Vietnam (Muong Khuong, Co, Meo, Tap Na, and Mong Cai), 2 exotic breeds kept in Vietnam (Landrace and Yorkshire), 3 European commercial breeds (German Land-race, Piétrain, and Large White), the Chinese breed Meishan, and the European Wild Boar. Each individual was genotyped for 20 selected polymorphic microsatellite loci. The Vietnamese autochthonous breeds showed higher degrees of polymorphism, allelic diversity, and heterozygosity than the other pig breeds. Also, large genetic diversity was observed across the area of distribution, with village-specific subpopulations, which led to significant inbreeding coefficients. As expected, genetic distances showed large differences among European-based, Chinese, and Vietnamese indigenous breeds and reflected the geographical distribution of breeds. In comparison with the European breeds, the Vietnamese indigenous pig breeds harbored a considerable amount of genetic diversity and, therefore, will be of significance for livestock bioconservation.

Animals↗
PubMed1985

Additive and heterosis effects on preweaning traits, maternal ability and reproduction from crossing of the Angus and brown Swiss breeds in Florida.

Angus (A), Brown Swiss (S) and A X S reciprocal F1 (AS) dams were mated to A, S and AS (also reciprocal F1) sires resulting in nine breed groups of progeny with varying proportions of Angus and Brown Swiss breeding. Breed group of dam and of sire significantly influenced birth weight, preweaning daily gain, weaning weight, 205-d weight, condition score and frame size. The means for birth weight and weaning weight were 33 and 213 kg, respectively. Brown Swiss bulls sired calves with the heaviest birth and weaning weights. Calves produced by S dams likewise were heavier at birth and weaning. Pregnancy rates were influenced significantly by year, age and breed of dam and averaged 79, 95 and 92% for S, AS and A cows, respectively. Survival rate averaged 97% and was not influenced significantly by any of the effects examined. Because survival rates were similar for all breed groups, the results for weaning rate paralleled those for pregnancy rate. Genetic influences on preweaning growth traits and survival rate were partitioned into additive breed differences (B) and heterosis (H) effects for direct (d) and maternal (m) components. Pregnancy and weaning rates were examined using similar analyses except that genotype of service sire of dam replaced that of the offspring for the direct additive breed and direct heterosis components. The Bd values indicated that the Angus breed was inferior (P less than .01) to the Brown Swiss breed for all preweaning growth traits except for condition score, in which the Angus breed surpassed (P less than .01) the Brown Swiss. The Bm values also showed an advantage for the Brown Swiss breed for all preweaning growth traits. The additive maternal effect (the genotype of the females exposed), Bm, was important for pregnancy rate and weaning rate (P less than .001 and P less than .05) but not for survival rate (P greater than .10). The direct additive breed effect was not important for any reproductive trait. Direct heterosis did not affect any of the preweaning or reproduction traits; however, maternal heterosis (Hm) significantly affected all traits except birth weight, frame score and survival rate. The Hm estimates were 12.0 and 8.4 kg for weaning weight and 205-d weight, respectively. The Hm estimates for pregnancy rate, survival rate and weaning rate were 10, 2 and 13%, respectively.

Animals↗
PubMed1987

Periodic rotational crosses. III. Sire-breed rotations with overlapping generations among dams.

Sire-breed rotations are defined as the changing of sire breeds ignoring the sire-breed pedigree of dams from overlapping generations. The limiting theoretical proportion of maximum potential heterozygosity maintained at equilibrium when there is no culling of dams was found to be equal to that of a composite population with the same breed composition. Heterozygosity was simulated with a deterministic model that assumed 20% of reproducing females in each age group were culled each mating period. Maximum age of reproducing females was varied from 3 to 10 mating periods (years for cattle and sheep, half-years for swine). Consecutive use of each sire breed in a sire-breed sequence from two to four mating periods maintained more heterozygosity than predicted by the limiting theoretical formula, which did not take the culling of females into account. Compared with complete sire and dam rotations, sire-breed rotations with the same breed sequence resulted in reductions of .03 to .13 of potential heterosis. Among two-breed, periodic rotations, the difference ranged from .03 to .08. The smaller differences were generally associated with younger maximum reproducing females ages and the larger differences with older maximum ages. Heterozygosity difference times heterosis is a measure of the expected returns for the more intensive management often needed for complete rotations. Scaled breed difference ranges over which one periodic rotation of sire breeds exceeds another are shifted by overlapping generations among the females. Breed utilization is unchanged by overlapping generations, but relative differences in heterosis utilization are altered.

Animal Husbandry↗
PubMed2005

Genetic progress in multistage dairy cattle breeding schemes using genetic markers.

The aim of this paper was to explore general characteristics of multistage breeding schemes and to evaluate multistage dairy cattle breeding schemes that use information on quantitative trait loci (QTL). Evaluation was either for additional genetic response or for reduction in number of progeny-tested bulls while maintaining the same response. The reduction in response in multistage breeding schemes relative to comparable single-stage breeding schemes (i.e., with the same overall selection intensity and the same amount of information in the final stage of selection) depended on the overall selection intensity, the selection intensity in the various stages of the breeding scheme, and the ratio of the accuracies of selection in the various stages of the breeding scheme. When overall selection intensity was constant, reduction in response increased with increasing selection intensity in the first stage. The decrease in response was highest in schemes with lower overall selection intensity. Reduction in response was limited in schemes with low to average emphasis on first-stage selection, especially if the accuracy of selection in the first stage was relatively high compared with the accuracy in the final stage. Closed nucleus breeding schemes in dairy cattle that use information on QTL were evaluated by deterministic simulation. In the base scheme, the selection index consisted of pedigree information and own performance (dams), or pedigree information and performance of 100 daughters (sires). In alternative breeding schemes, information on a QTL was accounted for by simulating an additional index trait. The fraction of the variance explained by the QTL determined the correlation between the additional index trait and the breeding goal trait. Response in progeny test schemes relative to a base breeding scheme without QTL information ranged from +4.5% (QTL explaining 5% of the additive genetic variance) to +21.2% (QTL explaining 50% of the additive genetic variance). A QTL explaining 5% of the additive genetic variance allowed a 35% reduction in the number of progeny tested bulls, while maintaining genetic response at the level of the base scheme. Genetic progress was up to 31.3% higher for schemes with increased embryo production and selection of embryos based on QTL information. The challenge for breeding organizations is to find the optimum breeding program with regard to additional genetic progress and additional (or reduced) cost.

Animals↗