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PubMed2004

Total synthesis of the polyene-polyol macrolide RK-397, featuring cross-couplings of alkynylepoxide modules.

The total synthesis of the natural product RK-397 is based on a new synthetic strategy for assembling polyacetate structures, by efficient cross-coupling of nucleophilic terminal alkyne modules with electrophilic epoxides bearing another alkyne at the opposite terminus. The natural product is constructed from four principal modules: a polyene precursor for carbons 3-9, and three alkyne-terminated modules for carbons 10-16, 17-22, and 23-33. Each module is prepared with control of all stereochemical elements, and the alkynyl alcohols obtained from alkyne-epoxide couplings are converted into 1,3-diols by a sequence of hydroxyl-directed hydrosilylation, C-Si bond oxidation, and stereoselective ketone reduction with induction from the beta-hydroxyl group. The highly convergent nature of our synthetic pathway and the flexibility of the modular synthesis strategy for virtually any stereoisomer can provide access to other members of the polyene-polyol macrolides, including stereoisomers of RK-397.

Alkynes↗

PubMed2001

Stereospecific 1,3-migration of an Fe(CO)3 group on acyclic conjugated polyenes: application to remote and iterative asymmetric induction.

The stereochemical outcome of the 1,3- and 1,5-migration of an Fe(CO)3 group on (acyclic polyene)Fe(CO)3 complexes and their application to stereoselective construction of remote and contiguous stereogenic centers are described. Treatment of the [(eta(4)-4-7)triene]Fe(CO)3 complexes 1a-d bearing an electron-withdrawing group on the terminal position of an uncomplexed olefin with a base such as KN(SiMe3)2 (KHMDS) and LiCH2CN induced the 1,3-migration reaction of the Fe(CO)3 group, giving the [(eta4-2-5)triene]Fe(CO)3 complexes 2a-d in moderate to good yields, depending on the electron-withdrawing groups. From an experiment using the chiral (trienenitril)Fe(CO)3 complex 5, it is revealed that the 1,3-migration proceeds with inversion of configuration. Similarly, the 1,5-migration reaction of the[(eta4-6-9)tetraenone]Fe(CO)3 complexes 9 occurred with a catalytic amount of KHMDS, giving the [(eta4-2-5)tetraenone]Fe(CO)3 complexes 10 with retention of configuration. Furthermore, we have succeeded in the first regio- and stereoselective nucleophilic substitution of the (3,5-diene-1,2-diol) Fe(CO)3 complexes (15 --> 24a-h) with various nucleophiles via the ortho esters 21. By using iterative manipulation of the above two reactions, remote stereocontrol of the terminal substituents on acyclic polyene (9 --> 12) and construction of contiguous stereogenic centers (19, 28) have been achieved.

Journal Article↗

PubMed1996

Biomimetic Cyclization of Enamide-Containing Polyenes as a New Route to Azapolycycles.

Enamide 4 was studied for its effectiveness as a polyene precursor in biomimetic cyclizations. While most conventional Lewis acids were poor cyclization promoters, FeCl(3).6H(2)O initiated the conversion of 4 into tricycles 6 and 7 in excellent yield. The two isomeric products result from the cyclization of intermediate aldehyde 5 by either a chair or boat B-ring transition state. These results suggest that enamides may be incorporated into polyene precursors for the construction of larger azapolycycles such as azasteroids.

Journal Article↗

PubMed1997

Highly Stereoselective Synthesis of Conjugated Polyenes via a Homocoupling Reaction of Unsaturated Silanes.

A new method for the synthesis of conjugated polyenes containing up to eight double bonds with all-E configuration is reported. The procedure is based upon a homocoupling reaction of dienyl-, trienyl-, or tetraenylsilanes, promoted by PdCl(2) in methanol and in the presence of LiCl and CuCl(2). Configurational and conformational assignments were rigorously made on the basis of NMR spectra. The compounds obtained represent a novel interesting class of symmetrically substituted polyenes with potential optical and electrooptical properties. By changing the solvent, the homocoupling process can be switched to the halogenation of the silyl-substituted terminal double bond, thus leading to polyenyl halides.

Journal Article↗

PubMed2005

A numerical simulation of nonadiabatic electron excitation in the strong field regime: Linear polyenes.

Time-dependent Hartree-Fock theory has been used to study of the electronic optical response of a series of linear polyenes in strong laser fields. Ethylene, butadiene, and hexatriene have been calculated with 6-31G(d,p) in the presence of a field corresponding to 8.75 x 10(13) W/cm2 and 760 nm. Time evolution of the electron population indicates not only the pi electrons, but also lower lying valence electrons are involved in electronic response. When the field is aligned with the long axis of the molecule, Löwdin population analysis shows large charges at each end of the molecule. For ethylene, the instantaneous dipole moment followed the field adiabatically, but for hexatriene, nonadiabatic effects were very pronounced. For constant intensity, the nonadiabatic effects in the charge distribution, instantaneous dipole, and orbital populations increased nonlinearly with the length of the polyene. These calculations elucidate the mechanism of the strong field nonadiabatic electron excitation of polyatomic molecules leading to their eventual ionization and fragmentation. The described computational methods are a viable tool for studying the complex processes in multielectron atomic and molecular systems in strong laser fields.

Journal Article↗

PubMed2005

Numerical simulation of nonadiabatic electron excitation in the strong field regime. 2. Linear polyene cations.

Time-dependent Hartree-Fock theory has been used to study the electronic optical response of a series of linear polyene cations (+1 and +2) in strong laser fields. The interaction of ethylene, butadiene, and hexatriene, with pulsed and CW fields corresponding to 8.75 x 10(13) W/cm(2) and 760 nm, have been calculated using the 6-31G(d,p) basis set. Nonadiabatic processes including nonlinear response of the dipole moment to the field and non-resonant energy deposition into excited states were more pronounced for the monocations in comparison with dications. For a given charge state and geometry, the nonadiabatic effects in the charge distribution and instantaneous dipole increased with the length of the polyene. For pulsed fields, the instantaneous dipole continued to oscillate after the field returned to zero and corresponded to a non-resonant electronic excitation involving primarily the lowest electronic transition. For a given molecule and fixed charge state, the degree of nonadiabatic coupling and excitation was greater for geometries with lower excitation energies.

Journal Article↗

PubMed2006

Assessment of density functionals for pi systems: Energy differences between cumulenes and poly-ynes; proton affinities, bond length alternation, and torsional potentials of conjugated polyenes; and proton affinities of conjugated Shiff bases.

Woodcock et al. [J. Phys. Chem. A 2002, 106, 11923] pointed out that no density functional was able to obtain the correct sign of the relative energies of the allene and propyne isomers of C3H4 and that density functional theory (DFT) predicts that poly-ynes are insufficiently stabilized over cumulenes for higher homologues. In the present work, we show that the recent M05 density functional predicts the correct ordering of allene and propyne and gives a mean unsigned error (MUE) of only 1.8 kcal/mol for the relative energies of the two isomers of C3H4, C5H4, and C7H4. Two other recent functionals, M05-2X and PWB6K, also give reasonably low MUEs, 2.7 and 3.0 kcal/mol, respectively, as compared to 6.2 kcal/mol for the popular B3LYP functional. Another challenging problem for density functionals has been a tendency to overpolarize conjugated pi systems. We test this here by considering proton affinities of conjugated polyenes and conjugated Schiff bases. Again M05-2X performs quite well, with MUEs of 2.1 and 3.9 kcal/ mol, respectively, as compared to 5.8 and 5.9 kcal/mol for B3LYP. Averaged over the three problems, M05-2X has a MUE of 3.0 kcal/mol, the BMK functional of Boese et al. has an MUE of 3.2 kcal/mol, and M05 has an MUE of 5.1 kcal/mol. Twenty-two other tested functionals have MUEs of 5.2-8.1 kcal/mol averaged over the three test problems. Both M05 and M05-2X do quite well, compared to other density functionals, for torsion potentials in butadiene and styrene, and M05 does very well for bond length alternation in conjugated polyenes. Since the M05 functional has broad accuracy for main group and transition metal chemistry and M05-2X has broad accuracy for main group chemistry, we conclude that significant progress is being made in improving the performance of DFT across a wide range of problem types.

Journal Article↗

PubMed2000

Sub-therapeutic exposure to polyene antimycotics elicits a post-antifungal effect (PAFE) and depresses the cell surface hydrophobicity of oral Candida albicans isolates.

Post-antifungal effect (PAFE) is defined as the suppression of growth that persists following limited exposure of fungi to antimycotics and subsequent removal of the drug. The fungal pathogen Candida albicans is the major aetiologic agent of oral candidosis, and the cell surface hydrophobicity (CSH) of this yeast is considered a critical factor contributing to its colonisation potential. As the concentration of topically prescribed antifungals reach sub-therapeutic levels at dosage intervals, the study of the polyene-induced PAFE and its impact on the CSH of oral C. albicans should be of clinical relevance. Hence the aims of this investigation were to measure the PAFE and CSH of 12 isolates of C. albicans following limited exposure (1 h) to nystatin and amphotericin B and also to investigate the ultrastructural features of yeast cells following such antifungal exposure. The yeasts were exposed to sub-lethal concentrations of nystatin (x2 MIC) and amphotericin B (x2 MIC) for a period of 1 h. Following subsequent removal of the drug, the PAFE and the CSH of the isolates were assessed by a turbidometric measurement of growth and a biphasic aqueous-hydrocarbon assay, respectively. The mean duration of PAFE of nystatin and amphotericin B were 5.99 (+/-0.49) h and 8.73 (+/-0.93) h, respectively, while the reduction in CSH following exposure to these drugs were 17.32% (P<0.05 for 83% of the isolates) and 14.26% (P<0.05 for 66% of the isolates), respectively. On scanning electron microscopy the exposed cells were seen to undergo collapse of the internal cell membrane, leaving an intact cell wall, while a proportion of cells were deflated. Some cells showed intense puckering of the cell wall, resulting in a mulberry appearance. Taken together, these data elucidate additional mechanisms by which polyene antimycotics may operate in vivo to suppress candidal pathogenicity.

Amphotericin B↗

PubMed2002

Impact of lysozyme and lactoferrin on oral Candida isolates exposed to polyene antimycotics and fluconazole.

OBJECTIVE: To assess the antifungal activity of lysozyme and lactoferrin on 10 oral isolates each of Candida albicans and Candida tropicalis following their brief exposure (I h) to subtherapeutic concentrations of two polyene drugs - nystatin, amphotericin B, and an azole -fluconazole. METHODS: Yeasts were sequentially exposed to subtherapeutic concentrations of antifungals and then to either lysozyme or lactoferrin and the viability evaluated by quantifying colony-forming units. RESULTS: The exposure of both C. albicans and C. tropicalis isolates to all three antifungal agents significantly increased their susceptibility to lysozyme (P < 0.05) but not to lactoferrin. Exposure to the two polyene drugs had a lesser impact on the lysozyme susceptibility of both Candida species compared with the azole drug. Both interspecies and intraspecies sensitivity to lysozyme was noted and C. albicans was less susceptible than C. tropicalis. CONCLUSIONS: Lysozyme, in addition to being a potent natural antifungal agent, may act synergistically with the studied antimycotics.

Amphotericin B↗

PubMed2005

Characterization of the polyene macrolide P450 epoxidase from Streptomyces natalensis that converts de-epoxypimaricin into pimaricin.

The biosynthesis of the antifungal agent pimaricin by Streptomyces natalensis has been proposed to involve a cytochrome P450 encoded by the gene pimD. Pimaricin is derived from its immediate precursor de-epoxypimaricin by epoxidation of the C-4-C-5 double bond on the macrolactone ring. We have overproduced PimD with a N-terminal His6 affinity tag in Escherichia coli and purified the enzyme for kinetic analysis. The protein showed a reduced CO-difference spectrum with a Soret maximum at 450 nm, indicating that it is a cytochrome P450. Purified PimD was shown to catalyse the in vitro C-4-C-5 epoxidation of 4,5-de-epoxypimaricin to pimaricin. The enzyme was dependent on NADPH for activity with optimal pH at 7.5, and the temperature optimum was 30 degrees C. The kcat value for the epoxidation of de-epoxypimaricin was similar to the values reported for other macrolide oxidases. Enzyme activity was inhibited at high substrate concentration. This is the first time that a polyene macrolide P450 mono-oxygenase has been expressed heterologously and studied. The unique specificity of this epoxidase should be useful for the oxidative modification of novel polyene macrolide antibiotics.

Bacterial Proteins↗

PubMed2005

Two mutants selectively resistant to polyenes reveal distinct mechanisms of antifungal activity by nystatin and amphotericin B.

Polyene macrolides nystatin and amphotericin B are widely used in the treatment of fungal infections. In order to characterize factors affecting polyene activity, we have isolated Saccharomyces cerevisiae mutants showing selective resistance to nystatin and amphotericin B. Characterization of two of these mutants (nystatin-resistant mutant X1/16 and amphotericin B-resistant mutant X3/33) is presented. Genetic analysis revealed that resistance in each of these mutants is caused by a mutation in one gene with a different mode of inheritance. Nystatin resistance in mutant X1/16 is caused by changes in sterol spectrum while amphotericin B resistance in mutant X3/33 is probably related to modification of the cell wall. Our results suggest that, in spite of their structural similarity, nystatin and amphotericin B differ significantly in mechanisms of their antifungal activity.

Amphotericin B↗

PubMed2004

Experimental CC stretching phonon dispersion curves and electron phonon coupling in polyene derivatives.

We analyze the infrared and Raman spectra (both experimentally and with the aid of quantum chemical calculations) of a series of polyenals which provide us with the fortunate case of a set of polyene chains with one of the end groups consisting of a C=O group which not only does take part in the conjugation but also pulls electrons from the chain making the whole system highly polar, thus affecting the vibrational transition moments. In the following we show, for the first time, that it is possible to derive experimental phonon dispersion curves and these prove to be different for each chain length. We support our experimental findings with Density Functional Theory quantum chemical calculations which reproduce with sufficient accuracy the IR and Raman spectral pattern and at the same time help in disentangling the assignment of the fine structure observed in the experimental spectra.

Journal Article↗

PubMed2004

"Triplet-excited region" in polyene oligomers revisited: Pariser-Parr-Pople model studied with the density matrix renormalization group method.

We have carried out density matrix renormalization group calculations on the T1 state of linear polyenes applying the Pariser-Parr-Pople (PPP) Model. The geometry optimization for the polyene oligomers C(2n)H(2n+2) (n = 4,5,6,...,15) shows that the S0 to T1 excitation region is composed of a soliton-antisoliton pair located symmetrically away from the center of the chain and leads to single- and double-bond interconversions in between. The distance between the soliton and antisoliton centers in T1 state changes with the length of the chain, contradictory to earlier conclusions obtained with PPP-SDCI or ab initio SCI methods. The inconsistency most possibly comes from the insufficient consideration of the electron correlations in small-scale CI methods.

Journal Article↗

PubMed2005

Theoretical study of the lowest pi-->pi* excitation energies for neutral and doped polyenes.

In earlier theoretical studies, it has been widely noticed that the electron correlation effect played an important role in determining the excitation energies of low-lying pi-->pi(*) excited states for neutral polyenes and their radical cations and dications. In this paper, neutral and doped polyene oligomers of medium to large sizes are investigated with the Pariser-Parr-Pople model, and the pi-electron correlation effect is fully taken into consideration by virtue of the density-matrix renormalization group method. The excitation properties in the polymer limit are also obtained by exponential extrapolation from the finite oligomers. The reasonable agreement of our results with the available experimental observations and advanced ab initio calculations is witnessed. It is also observed that while charge doping can significantly lower the exciting energy, the odd-charged oligomers show lower excitation energies than the even-charged ones.

Journal Article↗

PubMed1999

The biosynthetic gene cluster for the 26-membered ring polyene macrolide pimaricin. A new polyketide synthase organization encoded by two subclusters separated by functionalization genes.

The biosynthetic gene cluster for the 26-membered ring of the polyene macrolide pimaricin extends for about 110 kilobase pairs of contiguous DNA in the genome of Streptomyces natalensis. Two sets of polyketide synthase (PKS) genes are separated by a group of small polyketide-functionalizing genes. Two of the polyketide synthase genes, pimS0 and pimS1, have been fully sequenced and disrupted proving the involvement of each of these genes in pimaricin biosynthesis. The pimS0 gene encodes a relatively small acetate-activating PKS (approximately 193 kDa) that appears to work as a loading protein which "presents" the starter unit to the second PKS subunit. The pimS1 gene encodes a giant multienzyme (approximately 710 kDa) harboring 15 activities responsible for the first four cycles of chain elongation in pimaricin biosynthesis, resulting in formation of the polyene chromophore.

Amino Acid Sequence↗

PubMed1968

The interaction of polyene antibiotics with thin lipid membranes.

Optically black, thin lipid membranes prepared from sheep erythrocyte lipids have a high dc resistance (R(m) congruent with 10(8) ohm-cm(2)) when the bathing solutions contain NaCl or KCl. The ionic transference numbers (T(i)) indicate that these membranes are cation-selective (T(Na) congruent with 0.85; T(Cl) congruent with 0.15). These electrical properties are independent of the cholesterol content of the lipid solutions from which the membranes are formed. Nystatin, and probably amphotericin B, are cyclic polyene antibiotics containing approximately 36 ring atoms and a free amino and carboxyl group. When the lipid solutions used to form membranes contained equimolar amounts of cholesterol and phospholipid, these antibiotics reduced R(m) to approximately 10(2) ohm-cm(2); concomitantly, T(Cl) became congruent with0.92. The slope of the line relating log R(m) and log antibiotic concentration was congruent with4.5. Neither nystatin (2 x 10(-5)M) nor amphotericin B (2 x 10(-7)M) had any effect on membrane stability. The antibiotics had no effect on R(m) or membrane permselectivity when the lipids used to form membranes were cholesterol-depleted. Filipin (10(-5)M), an uncharged polyene with 28 ring atoms, produced striking membrane instability, but did not affect R(m) or membrane ionic selectivity. These data suggest that amphotericin B or nystatin may interact with membrane-bound sterols to produce multimolecular complexes which greatly enhance the permeability of such membranes for anions (Cl(-), acetate), and, to a lesser degree, cations (Na(+), K(+), Li(+)).

Amphotericin B↗

PubMed1999

Inhibiting scrapie neuroinvasion by polyene antibiotic treatment of SCID mice.

The polyene antibiotic MS-8209 is currently one of the most effective drugs in the treatment of experimental scrapie. However, its mechanism of action and its site of intervention in the pathogenetical process of scrapie infection are largely unknown. It has been shown previously that the infection of immunodeficient SCID mice by the peripheral route provides a reliable model for direct scrapie neuroinvasion, bypassing the lymphoreticular system. Indeed, a proportion of SCID mice develop scrapie after a similar time to immunocompetent mice, despite their severe immune impairment. This model is now used to clarify the targets of MS-8209. In SCID mice, MS-8209 treatment protected against infection but did not prolong survival time. In SCID mice immunologically reconstituted prior to inoculation, the drug delayed the disease without an effect on the attack rate. These findings strongly suggest that MS-8209 acts by hampering the first step of the neuroinvasion process, i.e. the uptake of the infectious agent by peripheral nerve endings. The mechanism leading to the inhibition of agent propagation to nervous cells is discussed with regard to the properties of polyene antibiotics.

Amphotericin B↗

PubMed1994

HM17, a new polyene antifungal antibiotic produced by a new strain of Spirillospora.

An antifungal antibiotic (HM17) was obtained from a new isolate classified to the genus Spirillospora on the basis of its chemical and morphological properties. On solid media this antibiotic strongly inhibited the growth of strains of Fusarium oxysporum formae speciales albedinis, Botrytis cinerea, Gaeumaniomyces graminis and several other fungi known to be plant and human pathogens. Antifungal activity in culture collection strains of Spirillospora has not so far been reported. The u.v. absorption spectrum and physico-chemical characteristics place HM17 in the methylpentaene sub-group of polyene macrolides. HM17 is different from other known methylpentaenes. This is the first report of polyene production by a Spirillospora.

Actinomycetales↗