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At least 217 records · Page 12Linked to original sources
PubMed1999

Phylogenetic relationships of the New World monkeys (Primates, platyrrhini) based on nuclear G6PD DNA sequences.

In order to test hypotheses about the phylogenetic relationships among living genera of New World monkeys, 1.3 kb of DNA sequence information was collected for two introns of the glucose-6-phosphate dehydrogenase (G6PD) locus, encoded on the X chromosome, for 24 species of New World monkeys. These data were analyzed using a maximum parsimony algorithm. The strict consensus of the three most-parsimonious gene trees that result shows support for the following clades: a pitheciine clade including Callicebus within which Chiropotes and Cacajao are sister taxa, an Alouatta-atelin clade within which Brachyteles is the sister taxon of Lagothrix and which is sister to another clade containing the callitrichines, and a callitrichine/Aotus/Cebus/Saimiri clade. Within the callitrichines, Callimico is the sister taxon of Callithrix. Cebus and Saimiri form a clade. These results are broadly consistent with previously published DNA sequence analyses of platyrrhine phylogeny and provide additional support for groupings provisionally proposed in those earlier studies. Nevertheless, questions remain as to the relative phylogenetic placement of Leontopithecus and Saguinus, the branching order within the Aotus/Cebus/Saimiri/callitrichine clade, and the placement of the pitheciine clade relative to the atelines and the callitrichines.

Animals↗
PubMed2026

Taxonomic revision of the genus Methanobrevibacter, description of Methanomonile shimae gen. nov. sp. nov., and proposal of Methanobrevibacteraceae fam. nov.

Recent phylogenomic analyses revealed that the genus Methanobrevibacter, which consists almost exclusively of representatives from the intestinal tract of animals, is severely underclassified. Based on the large relative evolutionary divergence between individual subclades, members of the genus Methanobrevibacter have been reclassified into eight novel genera as new combinations proposed under the rules of the Code of Nomenclature of Prokaryotes Described from Sequence Data. Here, we validly publish the new names for all taxa with type strains also under the rules of the International Code of Nomenclature of Prokaryotes. This includes members of the genera Methanacia, Methanobaculum, Methanobinarius, Methanocatella and Methanoflexus. Moreover, we propose to place Methanobrevibacter acididurans, whose genome was only recently sequenced, in the new genus Methanobotrus and describe a new isolate from the gut of a cockroach as Methanomonile shimae gen. nov. sp. nov. Based on the large evolutionary distance from the remaining members of Methanobacteriaceae, we propose to reclassify all genera within the radiation of Methanobrevibacter sensu lato into their own family, Methanobrevibacteraceae fam. nov. In addition, we reclassify Methanothermobacter tenebrarum as Methanothermobaculum tenebrarum gen. nov. comb. nov. into a new family, Methanothermobaculaceae (Methanobacteriales) and provide emended descriptions for the phylum Methanobacteriota and the classes Methanobacteria and Methanococci.

Phylogeny↗
PubMed2000

Dynamics and phylogenetic implications of MtDNA control region sequences in New World Jays (Aves: Corvidae).

To study the evolution of mtDNA and the intergeneric relationships of New World Jays (Aves: Corvidae), we sequenced the entire mitochondrial DNA control region (CR) from 21 species representing all genera of New World jays, an Old World jay, crows, and a magpie. Using maximum likelihood methods, we found that both the transition/transversion ratio (kappa) and among site rate variation (alpha) were higher in flanking domains I and II than in the conserved central domain and that the frequency of indels was highest in domain II. Estimates of kappa and alpha were much more influenced by the density of taxon sampling than by alternative optimal tree topologies. We implemented a successive approximation method incorporating these parameters into phylogenetic analysis. In addition we compared our study in detail to a previous study using cytochrome b and morphology to examine the effect of taxon sampling, evolutionary rates of genes, and combined data on tree resolution. We found that the particular weighting scheme used had no effect on tree topology and little effect on tree robustness. Taxon sampling had a significant effect on tree robustness but little effect on the topology of the best tree. The CR data set differed nonsignificantly from the tree derived from the cytochrome b/morphological data set primarily in the placement of the genus Gymnorhinus, which is near the base of the CR tree. However, contrary to conventional taxonomy, the CR data set suggested that blue and black jays (Cyanocorax sensu lato) might be paraphyletic and that the brown jay Psilorhinus (=Cyanocorax) morio is the sister group to magpie jays (Calocitta), a phylogenetic hypothesis that is likely as parsimonious with regard to nonmolecular characters as monophyly of Cyanocorax. The CR tree also suggests that the common ancestor of NWJs was likely a cooperative breeder. Consistent with recent systematic theory, our data suggest that DNA sequences with high substitution rates such as the CR may nonetheless be useful in reconstructing relatively deep phylogenetic nodes in avian groups.

Animals↗
PubMed1996

The retinal ganglion cell classes of New World primates.

In the primate retina there are distinct ganglion cell classes, exhibiting particular morphologies and central projections, each responsible for conveying particular types of visual information to the brain. The chief retinal inputs to the cortex arise from specific ganglion cell classes, M-ganglion cells, responsible for carrying the luminance signal, and P-ganglion cells, that convey the red-green color opponent signal, as well as high contrast luminance signal. There are other ganglion cell classes, such as small-field bistratified cells, exhibiting dendrites that stratify at two different levels in the inner plexiform layer, which convey the blue-yellow color opponent signal. Most published data concerning primate retinal ganglion cell anatomy and physiology have been obtained from Old World species. Studies on New World monkeys have recently become of interest since they differ from the Old World monkeys with respect to the color vision inheritance pattern. On reviewing retinal ganglion cell layer organization in New World monkeys, it seems that there are more similarities than differences in relation to the Old World monkeys. Diurnal genera of New World monkeys exhibit a well-developed fovea centralis and ganglion cell density peak, as well as peripheral density values which are in the range reported for Old World monkeys and human. Moreover, all the major ganglion cell classes identified in Old World monkeys are also present in New World primates. Up to now, no obvious anatomical differences between dichromats and trichromats have been reported. The only genus that is significantly different from the others is the Aotus. It exhibits lower ganglion cell density in the central retina, and apparently lacks the small-field bistratified cells.

Animals↗
PubMed1996

Molecular phylogeny of the New World monkeys (Platyrrhini, primates) based on two unlinked nuclear genes: IRBP intron 1 and epsilon-globin sequences.

Nuclear sequences of the 1.8 kilobase (kb) long intron 1 of the interstitial retinol-binding protein gene (IRBP), previously determined for 11 of the 16 extant genera of New World monkeys (superfamily Ceboidea, infraorder Platyrrhini), have now been determined for the remaining 5 genera. The maximum parsimony trees found, first with IRBP sequences alone and then with tandemly combined IRBP and epsilon-globin gene sequences from the same species, supported a provisional cladistic classification with the following clusters. Subtribes Callitrichina (Callithrix, Cebuella), Callimiconina (Callimico), Leontopithecina (Leontopithecus) and Saguina (Saguinus) constitute subfamily Callitrichinae, and subfamilies Callitrichinae, Aotinae (Aotus), and Cebinae (Cebus, Saimiri) constitute family Cebidae. Subtribes Chiropotina (Chiropotes, Cacajao) and Pitheciina (Pithecia) constitute tribe Pitheciini; and tribes Pitheciini and Callicebini (Callicebus) constitute subfamily Pitheciinae. Subtribes Brachytelina (Brachyteles, Lagothrix) and Atelina (Ateles) constitute tribe Atelini, and tribes Atelini and Alouattini (Alouatta) constitute subfamily Atelinae. The parsimony results were equivocal as to whether Pitheciinae should be grouped with Atelinae in family Atelidae or have its own family Pitheciidae. The cladistic groupings of extant ceboids were also examined by different stochastic evolutionary models that employed the same stochastic process of nucleotide substitutions but alternative putative phylogenetic trees on which the nucleotide substitutions occurred. Each model, i.e., each different tree, predicted a different multinomial distribution of nucleotide character patterns for the contemporary sequences. The predicted distributions that were closest to the actual observed distributions identified the best fitting trees. The cladistic relationships depicted in these best fitting trees agreed in almost all cases with those depicted in the maximum parsimony trees.

Animals↗
PubMed1996

Trichromatic colour vision in New World monkeys.

Trichromatic colour vision depends on the presence of three types of cone photopigment. Trichromacy is the norm for all Old World monkeys, apes and humans, but in several genera of New World monkeys, colour vision is strikingly polymorphic. The difference in colour vision between these New and Old World primates results form differing arrangements of the pigment genes on the X chromosome. In Old World primates the three photopigments required for routine trichromatic colour vision are encoded by two or more X-chromosome pigment genes and an autosomal pigment gene. New World monkeys typically have only one X-chromosome pigment gene; multiple alleles allow different types of dichromatic colour vision and, in female heterozygous at this locus, variant forms of trichromatic colour vision. Here we report that multiple X-chromosome pigment genes and trichromatic colour vision are the norm for one genus of platyrrhine monkey, the howler monkey, Alouatta.

Alouatta↗
PubMed2001

New oxyuroid nematodes of the genera Ichthyouris and Spinoxyuris from South American freshwater fishes.

Three hitherto unknown oxyuroid nematode species of the family Pharyngodonidae are described from the intestine of South American freshwater fishes, two of them being established as species new to science: Spinoxyuris annulata sp. n. from Myleus ternetzi (Norman) (Serrasalmidae) from French Guiana (Sinnamary River) and Ichthyouris ovifilamentosa sp. n. from Cichlasoma sp. (Cichlidae) from Amazonas (Negro River, São Gabriel da Cachoeira), Brazil. A third species, recovered from the same host as the latter (Cichlasoma sp.), was identified only as Ichthyouris sp. because of the absence of the male, although it probably also represents a new species. S. annulata differs from the only other congeneric species, S. oxydoras Petter, 1994, mainly in the absence of egg filaments, the location of an unpaired postanal papilla in the male, a distinctly longer spicule, and in an approximately double length of the body. Ichthyouris ovifilamentosa is closest to I. ro Inglis, 1962, differing from it principally in the structure of the cephalic end, the position of the excretory pore, and in the presence of filamented eggs. Ichthyouris sp. females differ from their congeners mainly in a characteristic structure of the cephalic end, the extent of lateral alae and the shape of their posterior ends, and in the character of egg filaments.

Animals↗
PubMed1985

On the loss of uricolytic activity during primate evolution--I. Silencing of urate oxidase in a hominoid ancestor.

Urate oxidase activity is not detectable in liver homogenates from the gibbon, orangutan, chimpanzee, gorilla and human. Liver homogenates from five genera of Old World and two genera of New World monkeys have easily detectable levels of urate oxidase activity. There is no evidence for extant detectable intermediate steps in the loss of urate oxidase activity in the hominoids. Urate oxidase activity from Old World and New World monkeys is stable, a simple observation which debunks a long-standing myth. Urate oxidase activity was silenced in an ancestor to the five living genera of hominoids after divergence from the Old World monkeys.

Animals↗
PubMed1989

Specific IgE antibodies to 16 widespread mold genera in patients with suspected mold allergy.

A panel of 55 sera from patients with suspected mold allergy from two different geographic areas, A and B, was investigated for specific IgE antibodies to 16 individual molds using Phadebas RAST technique. The molds investigated were Alternaria, Cladosporium, Aspergillus, Penicillium, Mucor, and Candida from the former RAST panel and ten additional new mold genera. The RAST screening revealed that 73% of patients had specific IgE antibodies to at least one of the 16 molds. Eighteen percent were negative to the six molds of the previous RAST panel but had specific IgE antibodies to at least one of the ten new molds. The highest frequency of IgE antibodies in the A group could be assigned to Cladosporium, followed by Botrytis and Helminthosporium. In group B, sensitivity to Botrytis and Phoma showed the highest frequencies. This study revealed that the relative importance of mold genera may vary greatly between patient groups from different geographic areas. Some of the species of the expanded RAST panel seem to be at least as important as Alternaria and Cladosporium. Multiple sensitivities seem to be caused by sensitization by many mold species rather than by cross-reactivity.

Alabama↗
PubMedDate not supplied

[New data on the fauna of blood-sucking Culicidae mosquitoes in Ziiama forest (Forest Guinea)].

A total of 885 specimens of blood-sucking mosquitos from Zyama Forest (the Republic of Guinea) were identified as belonging to 38 species of 8 genera. Three species were recorded there for the first time whereas 27 species, 2 subgenera and 2 genera were new for the studied region of the country (Forest Guinea). Four specious combinations of the mosquitos were distinguished as anthropophilic, sylvatic, meadow and marsh ones.

Africa, Western↗
PubMed2001

[Marine biodiversity of Costa Rica, the microcrustacea: Copepoda (Crustacea: Maxillopoda)].

This report is part of a series that summarizes the species and localities of Costa Rican marine taxa. A review of the literature on copepods, both pelagic and benthic for the Pacific and Caribbean coast of Costa Rica, includes eighty species. Sixty seven pelagic species have been found, distributed between sixteen calanoid, one cyclopoid, three harparticoid and four poecilostomatoid families. Moreover, thirteen benthonic species distributed into six families, all harparticoids, are reported. Among the pelagic families, Pontellidae has six species, while Paracalanidae and Eucalanidae had five each. Other families, like Calanidae, Pseudodiaptomidae and Acartiidae had four species and most families only one. Forty five species are reported only for the Pacific coast, thirteen for the Caribbean coast, only nine species occurred in both coasts; being a direct consequence of the more intensive research effort in the Pacific. Pelagic copepod biodiversity reflects different oceanographic conditions in both coasts. Typical estuarine species were found in the lower region of the Gulf of Nicoya, while a mixture of estuarine and oceanic species were found in Golfo Dulce. Diversity in the Caribbean, specially at the Cahuita coral reef is lower in comparison with the copepod diversity found in other regions in the Caribbean sea. This may be due to the high sediment resuspension rate characteristic of the Cahuita coral reef, which could affect the reproduction of many holozooplankters, specially copepods. Although sixty seven pelagic copepod species appears to be in low numbers, in terms of specific biodiversity it is as high when compared to numbers found in other tropical areas. Thirteen species are reported in the literature, all harparticoids. Five species, three sub-species and one genera were new to science. Balacopsylla is reported for the first time from a neotropical regions, while the genus Karllangia, represented by two coexisting species in the Caribbean coast, belong to a few circumtropical-subtropical genera. The most diverse family was Tetragonicipitidae. This is the first effort to summarize the available information about the biodiversity of marine copepods for Costa Rica's coasts.

Animals↗
PubMed2002

SRY evolution in Cebidae (Platyrrhini: Primates).

Sex determination in mammals is dependent on the presence of SRY, which codes for a protein with a DNA binding motif (the HMG-box domain). Here we analyze the evolution of SRY among seven genera of New World monkeys belonging to the family Cebidae. Estimates of the number of synonymous and nonsynonymous substitutions indicated the absence of positive selection acting on SRY evolution. The presence of indels at the C-terminus coding region in different genera and species maintained an open reading frame, indicating a selective pressure constraining the evolution of this coding region. Available data on the fertility of natural and captive interspecific hybrids failed to show any relationship between SRY evolution and speciation for the genera herein studied. Our phylogenetic arrangement for Cebidae genera was similar to previous topologies based on mitochondrial and autosomal DNA sequences. This arrangement also corroborated the division of Cebus into two species groups. However, for Callithrix the differences among SRY topology and those derived from autosomal and mitochondrial genes suggested a Y-chromosome ancestral polymorphism.

Amino Acid Sequence↗
PubMed2006

New species and new combinations in the yeast genera Kregervanrija gen. nov., Saturnispora and Candida.

Analysis of nucleotide sequences from the domains 1 and 2 of the large-subunit rDNA demonstrated species of the Pichia fluxuum clade to be phylogenetically isolated, and domains 1 and 2 and internal transcribed spacer rDNA sequence analyses of strains phenotypically identified as P. fluxuum resulted in the discovery of three new species. From this work, the following new genus, new species, and new combinations are proposed: Kregervanrija gen. nov.; type species Kregervanrija fluxuum comb. nov. (type strain NRRL YB-4273, CBS 2287); Kregervanrija delftensis comb. nov. (type strain NRRL Y-7119, CBS 2614); Kregervanrija pseudodelftensis sp. nov. (type strain NRRL Y-5494, CBS 10105); Saturnispora besseyi comb. nov. (NRRL YB-4711, CBS 6343); Saturnispora mendoncae sp. nov. (type strain NRRL Y-11515, CBS 5620); and Candida abiesophila sp. nov. (type strain NRRL Y-11514, CBS 5366).

Candida↗
PubMed1977

Host range characteristics of the primate coccidian, Isospora arctopitheci Rodhain 1933 (Protozoa: Eimeriidae).

Studies were conducted on 35 primates, 12 carnivores, and 2 marsupials to determine their susceptibility to the primate coccidian, Isospora arctopitheci. Patent oocyst infections resulted in 12 of the 14 species of animals investigated. These included 6 genera of New World primates native to Panama: Saguinus geoffroyi, Aotus trivirgatus, Ateles fusciceps, Cebus capucinus, Alouatta villosa, and Saimiri sciureus. In addition 4 families of carnivores (2 domestic and 2 sylvatic) and 1 species of marsupial became infected following experimental exposure. These animals are represented respectively by the following 6 genera and species: Canis familiaris; Felis catus; Nasua nasua, and Potos flavus; Eiria barbara; and Didelphis marsupialis. Four Old World rhesus monkeys, Macaca mulatta, and 1 carnivore, Bassaricyon gabbii, did not become oocyst positive. This unusually large host range makes this isosporan unique among the coccidia that have been investigated to date.

Alouatta↗
PubMed2003

Increasing diversity within Chlamydiae.

In recent years, 16S ribosomal DNA analyses has allowed the recognition of new chlamydia organisms, requiring the creation of new species, genera, and families within this unique, deep lineage of prokaryotes. The trachoma and psittaci groups chlamydiae are now recognized as separate genera, Chlamydia and Chlamydophila, respectively, and biovars of each group have been elevated to the species rank. Simkania and Parachlamydia have been associated with human respiratory infections, while Waddlia seems to be implicated in abortion in bovins. DNA amplification studies targeting the 16S rDNA have revealed a richer diversity within chlamydiae, identifying new lineages from both environmental and clinical samples. Further studies will be of interest to both examine the ecology and evaluate the clinical importance of these novel chlamydiae. Herein, we provide a summary of literature and our data about the novel chlamydial lineages.

Chlamydia↗
PubMed1979

Screening studies of yeasts capable of utilizing petroleum fractions.

In these studies, 23 yeast cultures belonging to 10 genera of ascosporogenous, ballistosporogenous, and asporogenous yeasts, were screened with respect to their abilities of hydrocarbon utilization in synthetic media. Thus, kerosene, n-hexadecane, and wax distillate were compared as sole carbon sources in 2% final concentration. Kerosene exhibited marked inhibition on the growth of the majority of the strains, whereas active growth was observed with Debaryomyces vanrijii and many species of the genus Candida in media with n-hexadecane or wax distillate as sole source of carbon. In addition, some cultures belonging to the genera Sporobolomyces, Hansenula, Cryptococcus, and Trigonopsis could utilize some of these substrates, but to a lesser extent. Highest yield of cells and protein was obtained with Candida lipolytica NRRL 1094 in n-hexadecane medium, supplied with 0.03% yeast extract and trace element solutions. The results are discussed with respect to the possibilities of using new yeast genera, with special reference to the genus Debaryomyces, in microbiol protein production.

Alkanes↗
PubMed2003

New species, notes and key to the aeroaquatic genera Beverwykella and Ramicephala gen. nov.

Two new aeroaquatic fungi, Ramicephala sphaerospora gen. sp. nov. and Beverwykella clathrata sp. nov., are described and illustrated from tropical and subtropical latitudes. B. clathrata, a species similar to B. cerebriformis, deviates from the latter in having a clathrate outermost cell layer instead of tightly appressed cells, a feature unique in Beverwykella. The second species, Ramicephala sphaerospora gen. sp. nov., has a unique combination of features concerning conidial ontogeny and morphology, and is therefore placed in a new genus. The genus most similar to Ramicephala is Beverwykella, from which it differs in having: (1) globose, non-flattened conidia; (2) a large central globose cell giving rise to centrifugally branching, tightly packed chains of cells; and (3) a compact peripheral cell layer, the cells of which are tightly interlocked in a zipper-like form. Similarities of R. sphaerospora to species of Pseudaegerita, Candelabrum and Cristulariella are discussed. Illustrations of and a key to all described species of Ramicephala and Beverwykella are provided.

Air Microbiology↗
PubMed1998

Two nuclear genes yield concordant relationships within Attacini (Lepidoptera: Saturniidae).

To extend initial characterizations of their phylogenetic utility, sequences from the nuclear genes for elongation factor-1 alpha (EF-1 alpha) and dopa decarboxylase (DDC) are tested for phylogenetic concordance with each other and with previous morphological evidence within the giant silk moth tribe Attacini (Lepidoptera: Saturniidae). The sampling of DDC is expanded from the 690 basepairs of previous studies to 1051 basepairs in the current study. All nine attacine genera are sampled. EF-1 alpha and DDC agree in the placement of seven of nine genera, with placement of the other two not in strong conflict. Combination of the gene sequences results in a nearly fully resolved tree that is consistent with EF-1 alpha alone and agrees with morphology in five of eight groups. Conflict between molecules and morphology is confined to deeper-level relationships within Attacini, where node support for the molecular hypotheses, but not the morphological hypotheses, is generally very strong. A strong signal is contributed by synonymous substitutions in both genes, and by nonsynonymous change particularly in DDC. The molecular phylogeny supports a revision of attacine biogeography in that neither East Asian nor New World genera form monophyletic groups.

Animals↗