Search PubMed⌕ Search

SEARCH · Search PubMed

Results for “microcosm experiments”

Search indexed PubMed citations on genomics, clinical trials, systematic reviews and public health. Explore titles, authors and supplied subject terms, then open the PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 199 records · Page 11Linked to original sources
PubMed2005

Effects of long-chain hydrocarbon-polluted sediment on freshwater macroinvertebrates.

High-molecular weight (> C16) hydrocarbons (HMWHs) are common pollutants in sediments of freshwater systems, particularly urban water bodies. No sediment quality guidelines exist for total hydrocarbons; more emphasis is placed on polyaromatic hydrocarbons, the most toxic component of hydrocarbons. A field-based microcosm experiment was conducted to determine whether unpolluted sediments spiked with synthetic motor oil impair freshwater macroinvertebrate assemblages. Total petroleum hydrocarbon (TPH) concentrations of 860 mg/kg dry weight significantly increased the abundance of Polypedilum vespertinus and Cricotopus albitarsis and decreased the abundance of Paratanytarsus grimmii adults (all Chironomidae), whereas TPH concentrations ranging from 1,858 to 14,266 mg/kg produced a significant reduction in the total numbers of taxa and abundance, with significant declines in the abundance of nine chironomid taxa. About 28% of water bodies surveyed in urban Melbourne, Australia, had TPH concentrations in sediments likely to cause ecological impairment, and about 14% of the water bodies surveyed are likely to have reduced species richness and abundance. Therefore, HMWHs can be a significant pollutant in urban water bodies. Freshwater sediment quality guidelines should be developed for this ubiquitous urban pollutant.

Animals↗
PubMed2006

Effects of the antibiotic ciprofloxacin on stream microbial communities and detritivorous macroinvertebrates.

Microbial communities play an important role in stream ecosystem processes, such as breakdown of senescent leaf litter, and as a primary nutritional source for detritivorous macroinvertebrates. Antibiotics may affect stream microbial communities and associated ecosystem processes, especially because recent stream and river monitoring programs have indicated the presence of antibiotics downstream of wastewater treatment plants. In the current study, effects of chronic exposure to the fluoroquinolone antibiotic ciprofloxacin (Cipro) were examined on stream microbial community-level physiological profiles and growth indices of detritivorous amphipods (Gammarus spp.) and caddisflies (Lepidostoma liba). Microcosm experiments were conducted using stream sediments and water, senesced leaf material (Acer saccharum), and macroinvertebrates. A shift in function of leaf-associated microbial communities (based on carbon source utilization) was observed for samples exposed to 100 microg/L of Cipro for 12 d compared to control and treatments exposed to 1 and 10 microg/L of Cipro. This was attributable to carbohydrate substrates, which had 2.7- to 3.5-fold lower microbial respiration than the lower concentrations and control (p < 0.001). For detritivores, Gammarus spp. condition index did not differ among control, 0.1, and 1.0 microg/L treatments after 30-d exposures (p > 0.05). Similarly, L. liba growth rate did not vary among control, 10, and 100 microg/L treatments after 45-d exposures (p > 0.05). These results suggest that Cipro may affect leaf-associated microbial communities, but at concentrations four orders of magnitude above those detected in streams. However, effects of the antibiotic on growth and condition of detritivores were not observed. Future work should focus on identifying specific changes in stream microbial communities as a result of Cipro exposure and impacts on other aquatic species.

Animals↗
PubMed2001

Indirect effects of zinc on soil microbes via a keystone enchytraeid species.

Effects of Zn pollution on a keystone species of forest soils, the enchytraeid Cognettia sphagnetorum, and its consequent indirect effects on microbial biomass and activity were studied in a microcosm experiment using experimentally contaminated humic soil. Microbial growth and decomposition were enhanced in the presence of C. sphagnetorum. At high Zn concentrations (< 2,393 mg/kg dry soil), populations of C. sphagnetorum went extinct, resulting in negative indirect effects on microbial activity as measured by soil respiration. Results indicate that pollution may affect species interactions in a soil food web and indirectly affect ecosystem processes such as decomposition rate. Effects of pollution on keystone organisms may radically alter soil ecosystem functioning and should be taken into account during risk-assessment procedures.

Animals↗
PubMed2006

Occurrence and rates of terminal electron-accepting processes and recharge processes in petroleum hydrocarbon-contaminated subsurface.

The occurrence and rates of terminal electron acceptor processes, and recharge processes in the unsaturated zone of a boreal site contaminated with petroleum hydrocarbons in the range C(10) to C(40) were examined. Soil microcosms were used to determine the rates of denitrification, iron (Fe) reduction, sulfate (SO(4)) reduction, and methanogenesis in two vertical soil profiles contaminated with oil, and in a noncontaminated reference sample. Furthermore, the abundances of the 16S rRNA genes belonging to Geobacteracaea in the samples were determined by real-time quantitative polymerase chain reaction (PCR). Analyses of ground water chemistry and soil gas composition were also performed together with continuous in situ monitoring of soil water and ground water chemistry. Several lines of evidence were obtained to demonstrate that both Fe reduction and methanogenesis played significant roles in the vertical profiles: Fe reduction rates up to 3.7 nmol h(-1) g(-1) were recorded and they correlated with the abundances of the Geobacteracaea 16S rRNA genes (range: 2.3 x 10(5) to 4.9 x 10(7) copies g(-1)). In the ground water, ferrous iron (Fe(2+)) concentration up to 55 mg L(-1) was measured. Methane production rates up to 2.5 nmol h(-1) g(-1) were obtained together with methane content up to 15% (vol/vol) in the soil gas. The continuous monitoring of soil water and ground water chemistry, microcosm experiments, and soil gas monitoring together demonstrated that the high microbial activity in the unsaturated zone resulted in rapid removal of oxygen from the infiltrating recharge thus leaving the anaerobic microbial processes dominant below 1.5 m depth both in the unsaturated and the saturated zones of the subsurface.

Anaerobiosis↗
PubMedDate not supplied

Surfactant-enhanced solubilization and anaerobic biodegradation of 1,1,1-trichloro-2,2-bis(p-chlorophenyl)-ethane (DDT) in contaminated soil.

The hydrophobic pesticide 1,1,1-trichloro-2,2-bis(p-chlorophenyl)-ethane (DDT) is a persistent contaminant in soils and sediments, although it has long been known to be biodegradable under anaerobic conditions. Addition of a nonionic surfactant was evaluated as a means of enhancing the solubilization, potential bioavailability, and anaerobic biodegradability of DDT and its metabolites--1,1-dichloro-2,2-bis(p-chlorophenyl)-ethane (DDD) and 1,1-dichloro-2,2-bis(p-chlorophenyl)-ethylene (DDE)--in an aged contaminated soil. Approximately 12 mg surfactant/g soil was required before concentrations greater than the critical micelle concentration were observed in the liquid phase in soil microcosms. At greater doses, solubilization of each DDT, DDD, and DDE isomer increased linearly with the surfactant dose. Solubilization data were consistent with equilibrium models that account for simultaneous partitioning of hydrophobic compounds between the aqueous, soil, and pseudomicellar phases. Significantly greater rates and extents of DDT degradation were observed in anaerobic microcosms that were regularly fed a cellulose substrate or amended with surfactant (with or without cellulose) relative to controls. The surfactant substantially increased the rate of DDT degradation during the first 9 weeks, although there were no significant differences between cellulose-fed microcosms and surfactant-amended microcosms after 31 weeks. In addition, DDD accumulated at less than stoichiometric amounts in surfactant-amended microcosms, whereas DDD accumulated nearly stoichiometrically with DDT loss in all other microcosms. Concentrations of DDE were unchanged throughout the course of the microcosm experiment.

Adsorption↗
PubMedDate not supplied

Polyhydroxyalkanoates degradation affects survival of Pseudomonas oleovorans in river water microcosms.

Bacterial survival in natural environments involves the ability of scavenging nutrients and energy sources. Polyhydroxyalkanoates (PHAs) are intracellular polymers that endow bacteria with enhanced survival capabilities in adverse environmental conditions. In this paper we compared survival of Pseudomonas oleovorans wild type and PHA depolymerase mutant strains in natural river waters by using microcosms. Experiments were performed with water samples collected from the Rio de la Plata. The survival of the P. oleovorans strain capable of degrading PHA was higher in raw river water compared to the depolymerase negative mutant strain. Bacterial numbers decreased during the experiment. At the end of the experiment, the difference in the number of cells between wild type and mutant strains was of 3 orders of magnitude. Mutants deficient in PHA degradation are useful to study the importance of reserve polymers in the survival of bacterial species in natural environments. They could also provide an adequate system for the analysis of the role of PHA in the tolerance to physical or chemical stress agents.

Carboxylic Ester Hydrolases↗
PubMedDate not supplied

[Regulation of the biomass and activity of soil microorganisms by microfauna].

Microcosm experiments showed that the microbial biomass and the respiration activity in soil were regulated by nematodes. Depending on nematode number and plant residue composition, the trophic activity of nematodes can either stimulate or inhibit microbial growth and respiration as compared to soil containing no nematodes. The stimulating effect was observed when nitrogen-free (starch) or low-nitrogen (wheat straw, C:N = 87) organic substrates were applied. Inhibition occurred when a substrate rich in nitrogen (alfalfa meal, C:N = 28) was decomposed and the nematode population exceeded the naturally occurring level. A conceptual model was developed to describe trophic regulation by microfauna (nematodes) of the microbial productivity and respiration activity and decomposition of not readily decomposable organic matter in soil. The stimulating and inhibiting influence of microfauna on soil microorganisms was not a linear function of the rate of microbial consumption by nematodes. These effects are largely associated with the induced change in the physiological state of microorganisms rather than with the mobilization of biogenic elements from the decomposed microbial biomass.

Animals↗
PubMed2001

Aquatic reclamation in the Athabasca, Canada, oil sands: naphthenate and salt effects on phytoplankton communities.

Microcosm experiments with natural indigenous phytoplankton communities were conducted to assess the effects of waters from oil sands extraction processes, emphasizing the naphthenate and salt constituents. Process waters of varying ages (zero to eight years) remediation histories, and chemical composition were obtained from outdoor mesocosms and inoculated with phytoplankton assemblages from a reference lake in the study area. Community composition measures, including percentage model affinity (PMA) and canonical correspondence analysis (CCA), revealed significant community effects of water from systems less than five years old, with naphthenate concentrations greater than 20 mg/L, compared to water from the reference lake. Canonical correspondence analysis, PMA, and regression analyses further showed that naphthenate concentration was significantly correlated with community structure. Using CCA, groups of taxa characteristic of waters with > 20 mg/L naphthenates (including Botryococcus braunii, Gloeococcus schroeteri, Cosmarium depressum, Chrysococcus rufescens, Chromulina spp., Ochromonas spp., and Keratococcus spp.) were identified. Salinity, as reflected in conductivity, was positively correlated with naphthenate concentration and itself appeared to influence the community structure. The results confirmed an important role for naphthenates in ecological effects of process waters from oil sands mining, but the influence of covarying factors such as salinity requires further investigation.

Carboxylic Acids↗
PubMed2003

Effects of the herbicide imazapyr on benthic macroinvertebrates in a logged pond cypress dome.

Increased herbicide use in silviculture over the last several decades has led to concern over potential water contamination, which may affect biotic health. In the southeastern United States, pine flatwoods are important for timber production and are often interspersed with cypress wetlands. Cypress domes are isolated, shallow basins that collect surficial waters from adjacent forested areas and therefore might be expected to contain pesticide from storm runoff. This study utilizes in situ microcosm experiments to assess the effects of a concentration gradient of the herbicide imazapyr (0.184, 1.84, and 18.4 mg/L, equivalent to 1, 10, and 100 times the expected environmental concentration from a normal application rate) on the macroinvertebrate community of a logged pond cypress dome using changes in macroinvertebrate composition, chironomid biomass, and chironomid head-capsule deformities. The control core was not significantly different from the surrounding cypress dome for any parameter, suggesting that enclosure effects were likely of minimal importance in the final experimental results. The lack of statistical difference (p < 0.05) in macroinvertebrate community composition, chironomid deformity rate, and chironomid biomass between treatments suggests that imazapyr did not affect the macroinvertebrate community at the concentrations tested. Chironomid deformity rate ranged from 0.97% for imazapyr control to 4.96% for the 100x treatment, with chironomid biomass being 1.79 and 1.87 mg/L, respectively.

Animals↗
PubMed2003

[Effect of bacterivorous nematodes on bacteria population under gnotobiotic culture].

A gnotobiotic microcosm experiment was conducted to study the influence of bacterivorous nematodes (Protorhabditis sp.) on bacteria (Pseudomonas fluorescens) population under different conditions including substrate concentration, oscillation pattern, and numbers of nematodes inoculated. When the bacteria were incubated under intermittent oscillation by hand (6 times at 0.5 h intervals, 22 degrees C), their growth was stimulated in the presence of nematoedes, and the bacteria grew faster with the increase of nematode numbers and substrate (liquid potato-sucrose medium) concentration. However, when the incubation was under continuous oscillation (100 rpm, 22 degrees C), bacteria population was deflated with the addition of nematodes, and the inhibition was greater when a higher concentration of substrate was used. It was found that the stimulation or inhibition of bacteria population by nematodes occurred in the logarithmic stage of bacteria growth. The optimal and over-grazing of nematodes on regulating bacteria population was discussed.

Animals↗
PubMed2004

[Interactions between fungal-feeding nematodes and fungi and their effects on soil nitrogen mineralization].

A species of fungal-feeding nematodes (Aphelenchus avenae) and two species of fungi (Micheli corticolus and Moniliaceae sp.) were isolated from an alluvial soil planted with paddy-rice and wheat in subtropical region. In order to approach their interactions and effects on soil nitrogen mineralization, a gnotobiotic microcosm experiment was carried out with four treatments, i.e., 1) soil + fungi-I (M. corticolus), 2) soil + fungi I + Aphelenchus avenae, 3) soil + fungi II (Moniliaceae sp.), and 4) soil + fungi II + Aphelenchus avenae at 22 degrees C for 25 days. The results showed that the individuals of nematode and fungi were increased simultaneously, suggesting that the inoculation of A. avenae stimulated the growth of fungi. The fungal-feeding nematode increased during the initial 20 days of incubation and then decreased slowly, and the individuals of the nematode that fed on Moniliaceae sp. (II) were higher than those fed on M. corticolus (I) (P<0.01). In the first 12 days of incubation, the population of Moniliaceae sp. (II) increased 2.5-3.5 times, while that of M. corticolus (I) increased slower but caught up after the 12th day, and the density reached 5.0-5.7 times higher than the corresponding treatments with only fungi inoculation. The interactions encouraged the soil nitrogen mineralization of all four treatments, as compared with the control. Comparing the treatments with and without fungal-feeding nematode inoculation, the treatments with fungal-feeding nematode had a higher content of soil NH4+-N than those with only fungi inoculations, which indicated that nematode had a greater effect on soil nitrogen mineralization than fungi. As for the two species of fungi, M. corticolus (I) had a greater effect on soil nitrogen mineralization than Moniliaceae sp. (II). It was observed, however, that the nitrification rate declined as compared with the control.

Animals↗
PubMed2005

[Effects of bacteria-feeding nematode at its different density on bacterial number, bacterial activity and soil nitrogen mineralization].

A gnotobiotic microcosm experiment was conducted to study the interactions between bacteria-feeding nematode Caenorhabditis elegans and bacterium Bacillus subtilis, and their effects on soil nitrogen mineralization at different Caenorhabditis elegans density. The results showed that the inoculation of the nematode stimulated the growth of the bacterium, and the increment was in order of 20>10>40 nematodes x g(-1) dried soil. The interaction between Caenorhabditis elegans and Bacillus subtilis significantly enhanced soil respiration rate and soil invertase, urease and phosphatase activities, with no significant differences among three test nematode densities. The inoculation of bacterial-feeding nematode markedly increased soil NH4+ -N and mineral N, suggesting that soil N mineralization was enhanced under the effect of the nematode. The increment of soil nitrogen mineralization at different nematode density was also in the same order mentioned above.

Animals↗
PubMed2006

Dechlorination after thermal treatment of a TCE-contaminated aquifer: laboratory experiments.

A microcosm study was conducted to evaluate dechlorination of trichloroethene (TCE) to ethene and survival of dechlorinating bacteria after a thermal treatment in order to explore the potential for post-thermal bioremediation. Unamended microcosms containing groundwater and aquifer material from a contaminated site dechlorinated TCE to cis-1,2-dichloroethene (cDCE), while lactate-amended microcosms dechlorinated TCE to cDCE or ethene. A thermal treatment was simulated by heating a sub-set of microcosms to 100 degrees C for 10d followed by cooling to 10 degrees C over 150 d. The heated microcosms demonstrated no dechlorination when unamended. However, when amended with lactate, cDCE was produced in 2 out of 6 microcosms within 300 d after heating. Dechlorination of TCE to cDCE thus occurred in fewer heated (2 out of 12) than unheated (10 out of 12) microcosms. In unheated microcosms, the presence of dechlorinating microorganisms, including Dehalococcoides, was confirmed using nested PCR of 16S rRNA genes. Dechlorinating microorganisms were detected in fewer microcosms after heating, and Dehalococcoides were not detected in any microcosms after heating. Dechlorination may therefore be limited after a thermal treatment in areas that have been heated to 100 degrees C. Thus, inflow of groundwater containing dechlorinating microorganisms and/or bioaugmention may be needed for anaerobic dechlorination to occur after a thermal treatment.

Bacteria↗
PubMed2006

The need for bioaugmentation after thermal treatment of a TCE-contaminated aquifer: Laboratory experiments.

A microcosm study was conducted to evaluate the need for bioaugmentation after a thermal treatment to anaerobically dechlorinate trichloroethene (TCE) to ethene. The microcosms were either: heated to 100 degrees C and slowly cooled to simulate thermal remediation while bioaugmenting when the declining temperature reached 10 degrees C; or kept at ambient groundwater temperatures (10 degrees C) and bioaugmented for comparison. Aquifer samples from three sediment locations within a TCE-polluted source zone were investigated in duplicate microcosms. In biostimulated (5 mM lactate) and heated microcosms, no conversion of TCE was observed in 4 out of 6 microcosms, and in the remaining microcosms the dechlorination of TCE was incomplete to cDCE (cis-dichloroethene). By comparison, complete TCE dechlorination to ethene was observed in 4 out of 6 heated microcosms that were bioaugmented with a highly enriched dechlorinating mixed culture, KB-1, but no electron donor, and also in 4 of 6 microcosms that were augmented with KB-1 and an electron donor (5 mM lactate). These data suggest that electron donor released during heating, was capable of promoting complete dechlorination coincident with bioaugmentation. Heated microcosms demonstrated less methanogenesis than unheated microcosms, even with elevated H2 concentrations and addition of KB-1, which contains methanogens. This suggests that the heating process suppressed the native microbial community, which can decrease competition with the bioaugmented culture and increase the effectiveness of dechlorination following a thermal treatment. Specifically, cDCE removal rates were four to six times higher in heated than unheated bioaugmented microcosms. This study confirms the need for bioaugmentation following a laboratory thermal treatment to obtain complete dechlorination of TCE.

Bacteria↗
PubMed1998

A novel experimental apparatus to study the impact of white noise and 1/f noise on animal populations.

This paper reports on the design and construction of a novel apparatus that allows a set of aquatic microcosms to experience complex temporal environmental fluctuations. Replicate microcosms were maintained in 18 water baths with independent environmental controls. We give results from a preliminary experiment designed to look at the effects of varying temperatures with different variance spectra (i.e. white noise or 1/f noise) on single species population dynamics. Matching time series (with identical elements, differently ordered) of environmental temperatures with different Fourier spectra were created for use as input to the apparatus using a novel spectral mimicry method. The apparatus functioned well during the course of the experiment making this an extremely useful research tool. This apparatus now provides ecologists with a means of studying how environmental variability and directional trends in this variability, are filtered and translated by real populations and micro-ecosystems.

Animals↗
PubMed2004

Cleaning oiled shores: laboratory experiments testing the potential use of vegetable oil biodiesels.

A series of laboratory experiments were carried out to test the potential of vegetable oil biodiesel for the cleaning of oiled shorelines. In batch experiments, biodiesel was shown to have a considerable capacity to dissolve crude oil, which appears to be dependent on the type of biodiesel used. Pure vegetable oil biodiesels (rapeseed and soybean) were significantly more effective in the cleanup of oiled sands (up to 96%) than recycled waste cooking oil biodiesel (70%). In microcosm and mesocosm experiments, oiled sediments were sprayed with biodiesel and subjected to simulated tides. Microcosm experiments revealed that, of those tested, the highest ratio of biodiesel to crude oil, had the highest effectiveness for cleaning fine sands, with ratios of 2:1 (biodiesel:crude oil) giving the best results. In the mesocosm experiments a ratio 1:1 of soybean biodiesel to crude oil removed 80% of the oil in cobbles and fine sands, 50% in coarse sand and 30% in gravel. Most of the oil was removed with the surface water, with only a small amount being flushed through the sediments. Particle size and pore size were important determinants in the cleanup and mobility of crude oil in the sediments in these static systems. It is expected that the biodiesel effectiveness should improve in the natural environment particularly in exposed beaches with strong wave action. However, more laboratory and field trials are required to confirm the operational use of biodiesel as a shoreline cleaner.

Environmental Pollution↗
PubMed2006

Relevance of side reactions in anaerobic reductive dechlorination microcosms amended with different electron donors.

In this study we examined the relative importance of side reactions, i.e. the formation of volatile fatty acids (VFA), and the reduction of alternative electron acceptors (nitrate, sulfate, Fe(III)), in enhanced dechlorination microcosms, amended with different electron donors, namely lactate, butyrate, and H(2)+acetate mixture. Dechlorination reactions proceeded at low rates and consequently, nearly all of the reducing equivalents (over 99%) available from electron donor consumption were channeled to (side) reactions other than dechlorination. The relevance of these side reactions was more evident with lactate which was consumed at higher rate than other electron donors. Correspondingly, high levels of VFA and soluble Fe(II) accumulated in the supernatant of lactate-amended microcosms. Ecotoxicity experiments (Lepidium sativum germination tests) also indicated that the supernatant was much more toxic/inhibitory than that of other microcosms. Among the electron donors tested, the H(2)+acetate mixture, yielded the most promising results in terms of extent of dechlorination, negligible accumulation of by-products, and residual groundwater toxicity. Fluorescent In situ Hybridization analysis (FISH) confirmed that H(2)+acetate-amended microcosms were dominated by Dehalococcoides spp., while a higher biodiversity was observed in the cultures fed with lactate or butyrate. Overall, the average amount of donor that was required for the removal of 1micromol of chloride from the contaminant differed greatly among the donors, namely 2.13meq/micromolCl(-) for lactate, 1.01meq/micromolCl(-) for butyrate, and 0.39meq/micromolCl(-) for H(2)+acetate mixture. Interestingly, dechlorinating activity was observed under sulfate-reducing conditions; this suggests that it may not be necessary to deplete the sulfate from the groundwater, for instance by supplying an excess electron donor, in order to achieve substantial dechlorination. Finally, in this study we found that the pathway of anaerobic lactate degradation shifted from the production of acetate and H(2) during active sulfate reduction to acetate and propionate upon sulfate depletion. Energetic considerations that support this finding were presented.

Bacteria, Anaerobic↗
PubMed2001

Millipedes and earthworms increase the decomposition rate of 15N-labelled winter rape litter in an arable field.

Effects of millipedes and earthworms on the decomposition of 15N-labelled litter of winter oilseed rape were investigated in a microcosm field experiment over a period of 264 days on an oat field near Göttingen managed by integrated farming. A total of 32 microcosms were filled with defaunated soil. 15N-labelled rape litter was placed either on top of the soil or buried into the soil simulating mulching and ploughing, respectively. To the microcosms nine adult individuals of Blaniulus guttulatus (Diplopoda) and two of Aporrectodea caliginosa (Lumbricidae) were added separately or in combination. In general, the presence of the animals accelerated the decomposition rate of the litter material. The effects were most pronounced in the presence of Aporrectodea caliginosa. The total amount of nitrate, ammonium and the amount of 35N leached from the microcosms was increased in the presence of earthworms or of both earthworms and millipedes. Both species proved to be important members of the detritus food web of the agricultural system studied.

Animals↗