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PubMed2006

Probing the electronic structure of platinum(II) chromophores: crystal structures, NMR structures, and photophysical properties of six new bis- and di- phenolate/thiolate Pt(II)diimine chromophores.

A general route for synthesis of six structurally similar Pt(II) diimine thiolate/phenolates chromophores possessing bulky phenolate or thiolate ligands is reported. The Pt chromophores were characterized using an array of techniques including 1H, 13C, and 195Pt NMR, absorption, emission, (spectro)electrochemistry, and EPR spectroscopy. Systematic variation of the electronic structure of the Pt(II) chromophores studied was achieved by (i) changing solvent polarity; (ii) substituting oxygen for sulfur in the donor ligand; (iii) alternating donor ligands from bis- to di-coordination; and (iv) changing the electron donating/withdrawing properties of the ligand(s). The lowest excited state in these new chromophores was assigned to a [charge-transfer-to-diimine] transition from the HOMO of mixed Pt/S (or Pt/O) character on the basis of absorption and emission spectroscopy, UV/vis (spectro)electrochemistry, and EPR spectroscopy. One of the chromophores, Pt(dpphen)(3,5-di-tert-butyl-catecholate) represents an example of a Pt(II) diimine phenolate chromophore that possesses a reversible oxidation centered predominantly on the donor ligand. Results from EPR spectroscopy indicate participation of the Pt(II) orbitals in the HOMO. There is a dramatic difference in the photophysical properties of carborane complexes compared to other mixed-ligand Pt(II) compounds, which includes room-temperature emission and photostability. The charge-transfer character of the lowest excited state in this series of chromophores is maintained throughout. Moreover, the absorption and emission energies and the redox properties of the excited state can be significantly tuned.

Crystallization↗
PubMed2004

Substituent-dependent photoinduced intramolecular charge transfer in N-aryl-substituted trans-4-aminostilbenes.

The photochemical behavior of trans-4-(N-arylamino)stilbene (1, aryl = 4-substituted phenyl) in solvents more polar than THF is strongly dependent on the substituent in the N-aryl group. This is attributed to the formation of a twisted intramolecular charge transfer (TICT) state for those with a methoxy (1OM), methoxycarbonyl (1CO), or cyano (1CN) substituent but not for those with a methyl (1Me), hydrogen (1H), chloro (1Cl), or trifluoromethyl (1CF) substituent. On the basis of the ring-bridged model compounds 3-6, the TICT states for 1CN and 1CO result from the twisting of the anilino-benzonitrilo C-N bond, but for 1OM it is from the twisting of the stilbenyl-anilino C-N bond, both of which are distinct from the TICT states previously proposed for N,N-dimethylaminostilbenes.

Journal Article↗
PubMed2004

Experimental and theoretical studies of the propargyl-allenylindium system.

The transient organoindium intermediates formed in the reaction of propargyl bromide with indium in aqueous media and tetrahydrofuran were investigated by NMR spectroscopy and found to be allenylindium(I) and allenylindium(III) dibromide. The influence of solvent and methyl substitution on the propargyl-allenylindium system was also studied. The experimental observations were supported by theoretical calculations using the B3LYP/6-311+G* method.

Journal Article↗
PubMed2000

Electron acceptors of the fluorene series. 10.(1) novel acceptors containing butylsulfanyl, butylsulfinyl, and butylsulfonyl substituents: synthesis, cyclic voltammetry, charge-transfer complexation with anthracene in solution, and X-ray crystal structures of two tetrathiafulvalene complexes

2,4,5,7-Tetranitro-9-fluorenone (1b) reacts readily with n-butanethiol in dipolar aprotic solvents with selective substitution of nitro groups by butylsulfanyl groups in positions 2 and 7 (2, 3); the 2,5-isomer 4 was formed only as a minor product (<1%). Condensation of fluorenones 2-4 with malononitrile yielded 9-dicyanomethylene derivatives 5-7, which showed strong intramolecular charge transfer (lambda approximately 510-560 nm) and were found to sensitize the photoconductivity of carbazole-containing polymer films. Oxidation of sulfides 2-4 gave sulfoxide 8 or sulfones 9-11, which then were converted into their corresponding dicyanomethylene derivatives 12-15. All these novel acceptors showed three reversible single-electron reduction waves (cyclic voltammetry) yielding radical anion, dianion, and radical trianion; moreover, acceptors 13-15 showed also a fourth reduction wave, representing reversible tetraanion formation. Substitution of the oxygen of the carbonyl group in the fluorenones by a dicyanomethylene group increased the thermodynamic stability (K(SEM) growth) of the radical anion; K(SEM) ranged from 3 x 10(5) to 3 x 10(9) M(-1). CV measurements characterize compounds 3, 4 (EA = 1. 86-1.89 eV) as poor acceptors, 2, 6-11 (EA = 2.13-2.31 eV) as moderate acceptors, and 5, 12-15 (EA = 2.53-2.66 eV) as strong electron acceptors. Charge-transfer complex (CTC) formation between acceptors 9, 10, 13, 14, and anthracene as a donor was monitored by the appearance of additional low-energy bands in the visible region (CTC bands) of their electron absorption spectra. Increasing the EA of the acceptors from 9-fluorenones to the corresponding 9-dicyanomethylenefluorenes increases the complexation constants K(CTC) by 2.5-3 times, while sulfonyl substituents present substantial steric hindrance for complexation (as compared to the nitro group), decreasing K(CTC) values. Two CTCs for acceptors 14 and 17 with tetrathiafulvalene (TTF) were obtained, and their structures were solved by single-crystal X-ray diffractometry, giving the stoichometries 14:TTF, 2:3, and 17:TTF:PhCl, 1:1:0.5. In the former complex the packing motif is a mixed.DDAD'A. stack; in the latter complex the D and A moieties form unusually close CT pairs, which pack in a herringbone motif.

Journal Article↗
PubMed2005

Resonance Raman studies of xanthine oxidase: The reduced enzyme-product complex with violapterin.

A study of the molecular, electronic, and vibrational characteristics of the molybdenum-containing enzyme complex xanthine oxidase with violapterin has been carried out using density functional theory calculations and resonance Raman spectroscopy. The electronic structure calculations were carried out on a model consisting of the enzyme molybdopterin cofactor [in the four-valent, reduced state; Mo(IV)O(SH)] covalently linked to violapterin (1H,3H,8H-pteridine-2,4,7-trione in the neutral form) via an oxygen bridge, Mo-O-C7. Full geometry optimizations were performed for all models using the SDD basis set and the three-parameter exchange functional of Becke combined with the Lee, Yang, and Parr correlational functional. Harmonic vibrational frequencies were determined for a variety of isotopes in an attempt to correlate experimentally observed shifts upon 18O-labeling of the Mo-OR bridge to bound product as well as shifts seen upon substitution of solvent-exchangeable protons in samples prepared in D2O. The theoretical vibrational frequencies compared favorably with experimentally observed vibrational modes in the resonance Raman spectra of the reduced xanthine oxidase-violapterin complex prepared in H2O and D2O and with 18O-labeled product. Correlating the isotopic shifts from the calculations with those from the resonance Raman experiments resulted in complete normal mode assignments for all modes observed in the 350-1750 cm(-1) range. The present work demonstrates that a model in which the violapterin is coordinated to the molybdenum of the active site in a simple end-on manner via the hydroxyl group introduced by an enzyme accurately predicts the observed resonance Raman spectrum of the complex. Given the numerous modes involving the bridging oxygen, a side-on binding mode can be eliminated.

Binding Sites↗
PubMed2005

Density Functional Study of Mo-Carbonyl-Catalyzed Alkynol Cycloisomerization: Comparison with W-Catalyzed Reaction.

Mo-catalyzed endo-cycloisomerizations of alkynes tethered to alcohols have been studied using density functional theory, and comparisons were made with the W-catalyzed reaction. The cycloisomerization is initiated with the formation of metal alkyne pi complex and is followed by the rate-determining step, which transforms the pi complex to a vinylidene carbene complex, considered to be critical for endo-mode cyclization. Several different alkynols have been selected to investigate five- and six-membered ring endo-cycloisomerizations in the presence of Mo(CO)(5) catalyst. The energy barriers calculated for five- and six-membered ring cycloisomerizations are within a range of 25-30 kcal/mol for most cases studied, showing no significant energy difference between the two metals. The stabilization effect of THF and Et(3)N solvents and the substitution reaction of THF by alkynol substrates in the reaction process with Mo and W complexes are studied as well. The principal difference between Mo- and W-catalyzed cycloisomerization processes appears to be the initial formation of a pi complex, which is more stabilizing for formation of the W-alkyne vs Mo-alkyne complexes.

Journal Article↗
PubMed2004

Time resolved solvent rearrangement dynamics.

Ultrafast pump-probe studies of I2- recombination in size-selected I2- (CO2)n cluster ions demonstrate long time coherent motions in size-selected clusters and the resulting non-statistical energy flow in the cluster. For I2- photodissociated to produce either I- + I or I- + I*, we identify a solvent-driven energy transfer process without a condensed phase counterpart. The mechanism involved is a Marcus-like solvent-driven curve crossing, with the driving force arising from asymmetric solvation, not just from solvent orientation. By substituting another halogen for one I atom, we "break" the I2- symmetry, and thus obtain direct information on the electron transfer process. New experiments on IBr- (CO2)n photodissociation products confirm the behavior suspected in the I2- studies. Time-resolved experiments on IBr- and theoretical modeling of the dynamics provide quantitative information on the multiple curve crossings encountered in the recombination process. In related investigations, femtosecond negative ion-neutral-positive ion charge reversal apparatus is employed to investigate transient neutral species evolving along a reaction coordinate. We report studies of the rearrangement dynamics of Cu(OH2) produced by photodetachment of the corresponding anion. Following a controlled delay period, a second ultrafast tunable laser pulse initiates resonant multiphoton photoionization of the time-evolving Cu...OH2 complex. The time-resolved Cu+ and Cu+(OH2) signals provide information both on the prompt dissociation of the complex and on energy redistribution between internal rotational and radial modes of the evolving complex. Calculations of the time evolution of the anion geometric configuration on the neutral potential energy surface yield deeper insight into the nature of the rearrangement process and the energy flow within the complex.

Journal Article↗
PubMed1996

Reduction in water activity greatly retards the phosphoryl transfer from ATP to enzyme protein in the catalytic cycle of sarcoplasmic reticulum Ca2+-ATPase.

Cys-674 of the sarcoplasmic reticulum Ca2+-ATPase was labeled with N-acetyl-N'-(5-sulfo-1-naphthyl)ethylenediamine without a loss of the catalytic activity. The ATP-induced drop in the fluorescence of the label, which was shown in our previous studies to reflect the conformational change upon formation of the calcium.enzyme.ATP complex, was followed by the stopped-flow method. The subsequent phosphoenzyme formation was followed by the rapid quenching method. Effects of a partial substitution of organic solvents for water in the medium on the conformational change and phosphoenzyme formation were investigated in the presence of 100 microM CaCl2 at pH 7.5, 0 degrees C. The rate of the conformational change increased with increasing ATP concentration (0.1 100 microM) and was unaffected by 30% (v/v) dimethyl sulfoxide. In contrast, the rate of phosphoenzyme formation decreased sharply with increasing concentration of dimethyl sulfoxide (20-40% (v/v)), even when phosphoenzyme formation was saturated with ATP. N,N-Dimethylformamide and glycerol had essentially the same effects as dimethyl sulfoxide. These results show that the reduction in water activity does not affect the rate of the conformational change upon formation of the calcium.enzyme.ATP complex, but greatly retards the subsequent phosphoryl transfer from ATP to the enzyme protein. This strongly suggests that in this early stage of the catalytic cycle water plays a critical role in ensuring the rapid turnover of the enzyme.

Adenosine Triphosphate↗
PubMed1993

Mutational analysis of the CD2/CD58 interaction: the binding site for CD58 lies on one face of the first domain of human CD2.

The adhesion interaction between the immunoglobulin superfamily molecules CD2 and CD58 (lymphocyte function-associated antigen 3) plays an important role in T cell and natural killer cell interaction with various antigen-presenting and target cells. Determination of the solution structure of rat CD2 domain 1 has allowed a model of human CD2 domain 1 to be generated, and a series of mutants based on this model have been made. Residues of domain 1 of human CD2 predicted to be solvent exposed were substituted with the equivalent residues present in the rat CD2 molecule. The ability of these mutants to mediate rosetting with human and sheep erythrocytes was studied. Results show that the binding site of CD2 for both human and sheep CD58 maps to the beta sheet containing beta strands CC'C"F and G. Residues K34 and E36 in beta strand C, R48 and K49 in beta strand C', and K91 and N92 in the loop connecting beta strands F and G are shown to be critical in the interaction. The data support the proposition that the interaction between CD2 and CD58 involves the major beta sheet face of CD2.

Amino Acid Sequence↗
PubMed1990

Photochemical studies on the anti-inflammatory drug diclofenac.

Irradiation with UVA light of the anti-inflammatory drug diclofenac [2-(2,6-dichloroanilino)phenylacetic acid] in aqueous buffer or methanol solution leads to sequential loss of both chlorine substituents and ring closure to carbazole-1-acetic acid as the major product. Minor products result from substitution by the solvent. The photosensitizing properties of diclofenac and its major photoproduct were tested with singlet oxygen substrates and in the free radical polymerization of acrylamide. Although the major carbazole product is a weakly phototoxic agent, able to generate singlet oxygen more efficiently than diclofenac, the free radical photodechlorination process is postulated as the probable initiation step of in vivo photosensitivity responses.

Diclofenac↗
PubMed1993

Structural and genetic analysis of protein stability.

One very encouraging development has been the freedom with which amino acid replacements can be introduced in a protein of interest. This has made it possible to obtain detailed structural and thermodynamic data on a wide variety of mutants that modify protein stability. Substitutions of solvent-exposed amino acids on the surfaces of proteins are seen to have little if any effect on protein stability or structure, leading to the view that it is the rigid parts of proteins that are critical for folding and stability. There is every reason to expect that it will be possible to rationalize the stabilities of mutant proteins from accurate knowledge of their structures. Substantial progress is being made in quantitating the interactions that determine and stabilize protein structures. Although not specifically the subject of this review, substantial progress is also being made in developing methods to engineer proteins of enhanced stability.

Drug Stability↗
PubMed2000

[Recent advances in environmental toxicology].

Among the sanitary effects of environmental chemicals, 3 examples illustrate the complexity of the issues to be solved: 1. endocrine disrupters, xenobiotics which interfere with hormonal systems, could increase the risk of reproductive and developmental disturbances and explain the rising incidence of hormone-dependent cancers; 2. multiple chemical sensitivity due to odorous chemicals has severe social consequences and warrants further research; 3. the reappearance of well-known poisoning cases and the emergent new toxic diseases due to substitutive products for solvents, cooling agents and spray propellants banned for ecological purpose, demonstrate the need for surveillance programmes of industrial and household products.

Air Pollutants↗
PubMed1991

[The ionized calcium fraction of the blood: dependence on different methodical factors].

In the present study the influence of different methodical factors (analyzer with ion-selective electrodes used, anticoagulation of blood samples with heparin, storing of samples at different temperatures) on the concentration of ionized calcium in blood was investigated. It could be shown that nowadays' systems for analysis of ionized calcium (ORION SS-20, AVL 980, NOVA 2 and 8, ICA 1) yield reproducible values for human as well as canine blood. System-related differences point to a varying degree of interferences on the ion-selective electrodes used. The concentration of ionized calcium is strongly dependent on different preanalytic factors. Heparin leads to a concentration-related reduction of calcium ions in blood. This negative impact of heparin can be overcome by substitution of the solvent for CaCl2 (2.5 mmol.l-1) without meaningful falsification of the measured values. At 4 degrees C blood samples can be stored without detectable changes in Ca++ concentration for 8 hours.

Animals↗
PubMed1993

Hybrid Rop-pIII proteins for the display of constrained peptides on filamentous phage capsids.

In order to increase the versatility of phage display technology, it is desirable to be able to impose some structural constraints on the peptides that are presented by the phage particles. This is currently not feasible since the conformation of the capsid proteins, used to link the foreign peptide to the phage, are either unknown (pIII) or too simple (pVIII) to permit the engineering of peptide inserts into a constrained context. To reach this scope we have modified the amino-terminus of gene III by appending a well-characterized protein motif, the four-helix bundle of the bacterial protein Rop. Phage particles displaying Rop can be separated from wild-type (wt) particles by affinity purification with an antibody. Rop can be extensively modified by substituting its solvent-exposed residues and/or by inserting peptides either into the carboxy-terminal tail or into the bend region that connects the two alpha-helices of the monomer. These results open the possibility to construct peptide libraries where the peptides are constrained either into an omega-loop type conformation or an alpha-helix. Libraries formed by peptides inserted into the carboxy-terminus can also be constructed. Furthermore, the system that we have developed permits to produce large quantities of the elements of the libraries in the cytoplasm or to display them on the capsid of filamentous phages.

Bacterial Proteins↗
PubMed2002

Comprehensive study of the methyl effect on the solvolysis rates of bridgehead derivatives.

The effect of a bridgehead methyl group on the hydride ion affinity in the gas phase of bicyclo[1.1.1]pent-1-yl (1+), 1-norbornyl (3+), cubyl (5+), 1-adamantyl (7+), bicyclo[2.2.2]oct-1-yl (9+),and bicyclo[3.1.1]hept-1-yl (11+) cations has been studied using density functional theory and ab initio methods. It is concluded that the methyl group always increases the stability of the substituted cations. The effect of the solvent on the stability of methyl-substituted cations in relation to the unsubstituted cations has been studied using the polarizable continuum model of the self-consistent reaction field theory. In the case of rearranging cations, the nucleophilic assistance of the solvent is determined by means of the interaction energy of the corresponding water complexes. It is concluded that the solvent causes the relative stabilization of the parent cations. As a consequence, most of the methyl-substituted bridgehead derivatives show a lower solvolysis rate than the corresponding unsubstituted compounds. A nonqualitative explanation of the methyl effect on the relative stability of bridgehead cations in both gas phase and solution is given for the first time. The ratios of solvolysis products in the case of rearranging bridgehead cations have also been computed from the relative stability of the intermediate water complexes.

Journal Article↗
PubMed2006

Adsorption at liquid interfaces: the generalized Langmuir isotherm and interfacial structure.

The thermodynamics of adsorption of amphiphilic surface-active compounds at the interface between two immiscible liquids is considered. At the interface, these molecules are supposed to replace a few of the adsorbed molecules of both solvents. Classical isotherms of adsorption (Frumkin, Langmuir, Henry) were based on the model of nonpenetrable interface, where an adsorbate can substitute only molecules of one solvent. However, at the interface between two immiscible electrolytes, like nonpolar oil-water interfaces, or liquid membrane amphiphilic molecules can substitute molecules of both solvents; therefore, classical isotherms are not applicable in these cases. The generalization of Langmuir and Frumkin isotherms for permeable and nonpermeable interfaces, known as the Markin-Volkov (MV) isotherm, gives the possibility to analyze adsorption and the interfacial structure in a general case. In the present paper, the adsorption isotherms of pentafluorobenzoic acid at the octane-water interface at various pH were measured by the drop-weight method. The thermodynamic parameters of pentafluorobenzoic acid (PFBA) adsorption at the octane-water interface were found. From the measurements of PFBA adsorption, the structure of the octane-water interface was determined. Substitution of one adsorbed octane molecule requires approximately three adsorbed PFBA molecules. This result shows that the orientation of solvent molecules at the interface is different from the bulk solution. Adsorbed octane molecules have a lateral orientation with respect to the interface. Gibbs free energy of adsorption equilibrium and thermodynamic parameters of PFBA adsorption show that the adsorption of PFBA at the octane-water interface is accompanied by a reduction in the attraction between adsorbed PFBA molecules as the pH decreases to the acidic region.

Adsorption↗
PubMed1999

Solvent effects on conformational dynamics of Zn-substituted myoglobin observed by time-resolved hole-burning spectroscopy.

Equilibrium conformational fluctuation of Zn-substituted myoglobin (ZnMb) has been studied in the nanosecond to millisecond time region and 180-300 K temperature region by the time-resolved transient hole-burning spectroscopy. In this technique, the conformational fluctuation of the protein is observed as the temporal variation of the hole spectrum burned by irradiation of the laser pulse. ZnMb solution samples in various solvent conditions were prepared and investigated to elucidate the solvent effect on the conformational dynamics of Mb. The configuration coordinate model assuming the harmonic energy landscape has given a fairly good description of the time dependence of the hole spectra. The observed temporal behavior of both the hole shift and the hole broadening was well expressed by the same stretched exponential correlation function with a rather small and almost temperature-independent beta of 0.26. It was found that the correlation time tauc of the conformational fluctuation of ZnMb determined by this analysis depends linearly on the solvent viscosity regardless of the solvent composition and temperature. This means the almost 0 activation energy for the fluctuation process and can not be understood by simply assuming the Arrhenius-type crossing of the barriers separating the conformational substates. It is shown that this linear viscosity dependence of tauc, as well as the temperature-independent beta, is qualitatively explained in the framework of the hierarchically constrained dynamics (HCD) model [Palmer, R. G. et al. (1984) Phys. Rev. Lett. 53, 958-961] with the postulate that the dynamics in the lowest level in the HCD model corresponds in the actual system to the configuration fluctuations of the solvent molecules surrounding the protein.

Models, Chemical↗