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PubMed2002

Density functional studies of the ground- and excited-state potential-energy curves of stilbene cis-trans isomerization.

Using spin-unrestricted density functional theory (the VWN Becke-Perdew potential), including broken-symmetry and spin-projection methods, we have obtained the potential-energy curves as a function of the central torsional angle of stilbene in the ground (S0), the first excited triplet (T1), the first excited singlet (S1), and the doubly excited singlet (S2) states. The thermal trans-->cis isomerization of stilbene passes through a diradical broken-symmetry electronic structure around the twisted conformation (90 degrees central torsional angle) in the ground state. Our calculations support the proposed triplet mechanism for sensitized cis [symbol: see text] trans photoisomerization and the nonadiabatic singlet mechanism proposed by Orlandi and Siebrand. On the T1 potential-energy curve, the rotation of the C=C bond for both trans- and cis-stilbene will lead stilbene to the twisted conformation, from which the twisted stilbene will decay to the ground-state surface that is nearly isoenergetic with the T1 surface and has diradical electronic structure in the twisted region. On the S1 potential-energy curve, the energy increases in the direction from trans- to the twisted stilbene, and crosses with the neutral doubly excited S2 potential-energy curve, which has a minimum at the twisted structure and is lower in energy than the zwitterionic doubly excited state. The twisted stilbene around the energy minimum of the neutral doubly excited S2-state will decay onto the ground-state surface from where the rotation of the C=C bond leads the twisted stilbene to either the trans or cis configuration and the isomerization of stilbene is then completed. Similar studies have also been performed on a stilbene derivative with a substituent group, NHCOCH3.

Journal Article↗
PubMed2001

Enhanced intersystem crossing in donor/acceptor systems based on zinc/iron or free-base/iron porphyrins.

The deactivation pathways of the singlet excited state of a series of zinc or free-base donor porphyrins covalently linked by a bridge to a paramagnetic iron(III) chloride porphyrin acceptor have been studied. These donor-bridge-acceptor systems all share a similar geometry (25 A donor-acceptor center-to-center distance), but the bridges vary in electronic structure. In previously reported investigations of zinc/iron porphyrin systems, the fluorescence quenching of the donor has predominantly been assigned to electron transfer. However, for the porphyrin systems studied in this paper, we show that the dominant deactivation channels are enhanced intersystem crossing and singlet energy transfer. In both series, the intersystem crossing rate (S1-->T1) of the donor moiety is almost doubled in the presence of a paramagnetic high-spin metal-porphyrin acceptor. The significant spectral overlap of the donor fluorescence and acceptor absorption in both series allows for efficient singlet energy transfer (Forster mechanism). Furthermore, the bridging chromophores mediate energy transfer and the enhancement is inversely dependent upon the energy gap between the donor and bridge excited states. Although Marcus theory predicts thermodynamically favorable electron transfer to occur in the systems investigated, the quenching rate constants were found to be independent of solvent polarity, and no charge-separated state could be detected, indicating very small electronic coupling for electron transfer.

Journal Article↗
PubMed2002

Time-resolved resonance Raman spectroscopy and density functional study of 2-fluorenylnitrene and its dehydroazepine products.

We report time-resolved resonance Raman spectra for 2-fluorenylnitrene and its dehydroazepine products acquired after photolysis of 2-fluorenylnitrene in acetonitrile. The experimental Raman band frequencies exhibit good agreement with the calculated vibrational frequencies from UBPW91/cc-PVDZ density functional calculations for the singlet and triplet states of the 2-fluorenylnitrene as well as BPW91/cc-PVDZ calculations for the two dehydroazepine ring-expansion product species. The decay of the 2-fluorenylnitrene Raman signal and the appearance of the dehydroazepine products suggest the presence of an intermediate species (probably an azirine) that does not absorb very much at the 416 nm probe wavelength used in the time-resolved resonance Raman experiments. Comparison of the singlet 2-fluorenylnitrene species with the singlet 2-fluorenylnitrenium ion species indicates that protonation of the nitrene to give the nitrenium ion leads to a significant enhancement of the cyclohexadienyl character of the phenyl rings without much change of the C-N bond length.

Journal Article↗
PubMedDate not supplied

Chlorophyll orientation and exciton migration in the photosynthetic membrane.

Measurements of the linear dichroism and of the polarization of the fluorescence with oriented chloroplasts have revealed a definite orientation of the pigment molecules with respect to the membrane plane. The Qy transition moments of the chlorophyll a molecules are more closely inclined with respect to this plane for the forms absorbing at longer wavelengths than for those absorbing at shorter wavelengths. The fluorescence depolarization by energy transfer, determined with magnetically-oriented chloroplasts, indicates that the degree of local order increases with wavelength for the different (absorption wavelength) forms of chlorophyll a in vivo. Laser pulses of either picosecond or microsecond duration have been used to probe the emission spectrum, lifetime and quantum yield of fluorescence of chloroplasts at various temperatures. With single picosecond pulses, singlet-singlet annihilations occur within the light-harvesting chlorophyll molecules. In the case of microsecond pulses, triplet excitions act as efficient quenchers of the singlets. By monitoring both the yield of carotenoid triplets and of the fluorescence during and after a laser flash, one can show that the carotenoid triplets account for part of but not all the fluorescence quenching.

Chlorophyll↗
PubMedDate not supplied

Luminescence of Ca(2+)-activated photoprotein obelin initiated by NaOCl and MnCl2.

The luminescence of obelin is initiated by NaOCl in a reaction mixture containing no calcium. The addition of Mn2+ enhances the light emission > 300-fold. Sodium azide and histidine, as singlet oxygen quenchers, inhibit NaOCl-activated obelin luminescence in the presence or absence of Mn2+. This suggests that the addition of NaOCl to the mixture causes singlet oxygen formation (stimulated by Mn2+ ions), and singlet oxygen initiates the light-emitting reaction.

Calcium↗
PubMedDate not supplied

Upper electron-excited states in bioluminescence: experimental indication.

The involvement of upper electron-excited states in bacterial bioluminescence process was studied with excitation energy-accepting molecules. The fluorescent aromatic compounds, anthracene and 1.4-bis(5-phenyloxazol-2-yl)benzene, were chosen. Energies of their lowest excited singlet states are higher than the energy of the analogous state of the bioluminescence emitter; their absorption spectra and bioluminescence do not overlap. Hence, the excitation of these molecules by singlet-singlet energy transfer or by light absorption is excluded. Sensitized fluorescence of these compounds in the bioluminescence systems has been recorded, indicating the activity of upper electron-excited states in the bioluminescent process.

Anthracenes↗
PubMed2004

Polarity effects on the photophysics of dendrimers with an oligophenylenevinylene core and peripheral fullerene units.

Highly soluble dendritic branches with fullerene subunits at the periphery and a carboxylic acid function at the focal point have been prepared by a convergent approach. They have been attached to an oligophenylenevinylene (OPV) core bearing two alcohol functions to yield dendrimers with two, four or eight peripheral C60 groups. Their photophysical properties have been systematically investigated in solvents of increasing polarity; that is, toluene, dichloromethane, and benzonitrile. Ultrafast OPV-->C60 singlet energy transfer takes place for the whole series of dendrimers, whatever the solvent. Electron transfer from the fullerene singlet is thermodynamically allowed in CH2Cl2 and benzonitrile, but not in apolar toluene. For a given solvent, the extent of electron transfer, signaled by the quenching of the fullerene fluorescence, is not the same along the series, despite the fact that identical electron transfer partners are present. By increasing the dendrimer size, electron transfer is progressively more difficult due to isolation of the central OPV core by the dendritic branches, which hampers solvent induced stabilization of charge separated couples. Compact structures of the hydrophobic dendrimers are favored in solvents of higher polarity. These structural effects are also able to rationalize the unexpected trends in singlet oxygen sensitization yields.

Journal Article↗
PubMed2005

Theoretical study on the reaction mechanism of the methyl radical with nitrogen oxides.

The radical-molecule reaction mechanism of CH3 with NOx (x = 1, 2) has been explored theoretically at the B3LYP/6-311Gd,p and MC-QCISD (single-point) levels of theory. For the singlet potential energy surface (PES) of the CH3 + NO2 reaction, it is found that the carbon to middle nitrogen attack between CH3 and NO2 can form energy-rich adduct a (H3CNO2) with no barrier followed by isomerization to b1 (CH3ONO-trans), which can easily convert to b2 (CH3ONO-cis). Subsequently, starting from b (b1, b2), the most feasible pathway is the direct N-O bond cleavage of b (b1, b2) leading to P1 (CH3O + NO) or the 1,3-H-shift and N-O bond rupture of b1 to form P2 (CH2O + HNO), both of which may have comparable contribution to the reaction CH3 + NO2. Much less competitively, b2 can take a concerted H-shift and N-O bond cleavage to form product P3 (CH2O + HON). Because the intermediates and transition states involved in the above three channels are all lower than the reactants in energy, the CH3 + NO2 reaction is expected to be rapid, as is consistent with the experimental measurement in quality. For the singlet PES of the CH3 + NO reaction, the major product is found to be P1 (HCN + H2O), whereas the minor products are P2 (HNCO + H2) and P3 (HNC +H2O). The CH3 + NO reaction is predicted to be only of significance at high temperatures because the transition states involved in the most feasible pathways lie almost above the reactants. Compared with the singlet pathways, the triplet pathways may have less contributions to both reactions. The present study may be helpful for further experimental investigation of the title reactions.

Journal Article↗
PubMed2006

Theoretical mechanistic study on the radical-molecule reaction of CHCl2/CCl3 with NO2.

The radical-molecule reaction mechanism of CHCl(2) and CCl(3) with NO(2) have been explored theoretically at the B3LYP/6-311G(d,p) and MC-QCISD (single-point) levels. For the singlet potential energy surface (PES) of CHCl(2) + NO(2) reaction, the association of CHCl(2) with NO(2) was found to be a barrierless carbon-to-nitrogen approach forming an energy-rich adduct a (HCl(2)CNO(2)) followed by isomerization to b(1) (trans-cis-HCl(2)CONO), which can easily interconvert to b(2), b(3), and b(4). Subsequently, the most feasible pathway is the 1,3-chlorine migration associated with N-O1 bond cleavage of b(1) leading to P(1) (CHClO + ClNO). The second competitive pathway is the 1,4-chlorine migration along with N-O1 bond rupture of b(4) giving rise to P(2) (CHClO + ClON). Moreover, some of P(1) and P(2) can further dissociate to give P(6) (CHClO + Cl + NO). The lesser followed competitive channel is the 1,3-H-shift from C to N atom along with N-O1 bond rupture of b(1) to form P(3) (CCl(2)O + HNO). The concerted 1,4-H-shift accompanied by N-O1 bond fission of b(3) to product P(4) (CCl(2)O + HON) is even much less feasible. For the singlet PES of CCl(3) + NO(2) reaction, the only primary product is found to be P(1) (CCl(2)O + ClNO), which can lead to P(2) (CCl(2)O + Cl + NO) via dissociation of ClNO. The obtained major products CHClO and CCl(2)O for CHCl(2) + NO(2) and CCl(3) + NO(2) reactions, respectively, are in good agreement with kinetic detection in experiment. Compared with the singlet pathways, the triplet pathways may have less contributions to both reactions. Because the rate-determining transition state involved in the feasible pathways lie above the reactants R, the title reactions may be important in high-temperature processes. The similarities and discrepancies among the CH(n)Cl(3-n) + NO(2) (n == 0-2) reactions are discussed in terms of the substitution effect. The present study may be helpful for further experimental investigation of the title reactions.

Chloroform↗
PubMed2007

The origin of the two-electron/four-centers C--C bond in pi-TCNE(2)2- dimers: electrostatic or dispersion?

The structure and stability of the pi-TCNE(2)2- dimers in K2TCNE2 aggregates is revisited trying to find if the origin of their two-electron/four-centers C--C bond are the electrostatic K+-TCNE- interactions or the dispersion interactions between the anions. The study is done at the HF, B3LYP, CASSCF (2,2), and MCQDPT/CASSCF (2,2) levels using the 6-31+G(d) basis set. Our results show that the only minima of this aggregate that preserves the pi-TCNE(2)2- structure has the two K+ atoms placed in equatorial positions in between the two TCNE- planes. When the K+ atoms are placed along the D2h axis of the anions the structure is not a minimum. The main energetic component responsible for the stability of these aggregates comes from the cation-anion interactions. However, a proper accounting of the dispersion component (as done in the MCQDPT/CASSCF (2,2) calculations) is needed to make the closed-shell singlet more stable than the open-shell singlet. Thus, the bond results from the combination of the electrostatic and dispersion components, being the first the dominant one. The optimum geometry of the closed-shell singlet is very similar to the experimental one found in crystals.

Journal Article↗
PubMedDate not supplied

Futile cycling of lactate through the plasma membrane of C6 glioma cells as detected by (13C, 2H) NMR.

We report a novel ((13)C, (2)H) nuclear magnetic resonance (NMR) procedure to investigate lactate recycling through the monocarboxylate transporter of the plasma membrane of cells in culture. C6 glioma cells were incubated with [3-(13)C]lactate in Krebs-Henseleit Buffer containing 50% (2)H(2)O (vol/vol) for up to 30 hr. (13)C NMR analysis of aliquots progressively taken from the medium, showed: (1) a linearly decreasing singlet at approximately 20.85 parts per million (ppm; -0.119 micromol/mg protein/hr) derived from the methyl carbon of [3-(13)C]lactate; and (2) an exponentially increasing shifted singlet at approximately 20.74 ppm (0.227 micromol/ mg protein/hr) from the methyl carbon of [3-(13)C, 2-(2)H]lactate. The shifted singlet appears because during its transit through the cytosol, [3-(13)C]lactate generates [3-(13)C, 2-(2)H]lactate in the lactate dehydrogenase (LDH) equilibrium, which may return to the incubation medium through the reversible monocarboxylate carrier. The methyl group of [3-(13)C, 2-(2)H]lactate is shifted -0.11 ppm with respect to that of [3-(13)C]lactate, making it possible to distinguish between both molecules by (13)C NMR. During incubations with 2.5 mM [1-(13)C]glucose and 3.98 mM [U-(13)C(3)]lactate or with 2.5 mM [1-(13)C]glucose and 3.93 mM [2-(13)C]pyruvate, C2-deuterated lactate was produced only from [1-(13)C]glucose or [U-(13)C(3)]lactate, revealing that this deuteration process is redox sensitive. When [1-(13)C]glucose and [U-(13)C(3)]lactate were used as substrates, no significant [3-(13)C]lactate production from [1-(13)C]glucose was detected, suggesting that glycolytic lactate production may be stopped under the high lactate concentrations prevailing under mild hypoxic or ischemic episodes or during cerebral activation.

Animals↗
PubMed2001

Zero-quantum filter offering single-shot lipid suppression and simultaneous detection of lactate, choline, and creatine resonances.

A zero-quantum (ZQ) filter offering single-shot lipid suppression and providing for simultaneous detection of the lactate methyl doublet (1.3 ppm) and nonoverlapping singlets including choline (Cho, 3.2 ppm) and creatine (Cr, 3.0 ppm) is described. Filtering is provided by soft mixing and reading pulses (RF(mix), RF(rd)) that are selective for the lactate methine quartet (4.1 ppm), Cho, and Cr resonances but exclude the 1.3 ppm lactate component and overlapping lipids. Surrounding RF(mix) and RF(rd) are magnetic field gradient pulses of equal magnitude but opposite signs to enable the rephasing of the zero-quantum lactate coherence and the creation of a stimulated echo for singlets within the pulse passbands. The sequence is designed to retain half the original lactate and singlet signal intensities. Theoretical predictions were confirmed experimentally at 1.5T using phantom acquisitions. The lipid suppression factor was measured to be over 10(3).

Choline↗
PubMed1999

Inactivation of glucose oxidase by diperoxovanadate-derived oxidants.

Inactivation of glucose oxidase occurred in the presence of bromide, vanadate, H(2)O(2), and phosphate (the bromide system), and this was prevented by NADH or phenol red, a bromine acceptor. Glucose oxidase present during the reaction between diperoxovanadate and a reduced form of vanadate, vanadyl (the vanadyl system), but not added after mixing the reactants, was inactivated, and this was accompanied by a loss of binding of the dye, Coomassie blue, to the protein. The transient intermediate of the type OVOOV(O(2)), known to form in these reactions and used in the oxidation of bromide ion and NADH, appears to be responsible for inactivating glucose oxidase. In both systems, the inactivation of the enzyme was prevented by histidine and DTT, known to quench singlet-oxygen. By direct measurement of 1270-nm emission of singlet-oxygen, its generation was demonstrated in the bromide system, and in the reaction of hypohalous acids with diperoxovanadate, but not in the vanadyl system. By themselves both hypohalous acids, HOCl and HOBr inactivated glucose oxidase, and their prior reaction with H(2)O(2) during which singlet-oxygen was released, protected the enzyme. The results provide support for possible oxidative inactivation of glucose oxidase by diperoxovanadate-derived oxidants.

Bromides↗
PubMed2000

Female-mediated differential sperm storage in a fly with complex spermathecae, Scatophaga stercoraria.

Multiple spermathecae potentially allow selective sperm use, provided that sperm from rival males are stored differentially, that is, in different proportions across storage compartments. In the yellow dung fly, Scatophaga stercoraria, females have three spermathecae arranged as a doublet and singlet. To test whether females store the sperm of rival males actively and differentially, we mated fixed male pairs to three females. After copulation, females were (1) dissected immediately before they could start laying a clutch of eggs, (2) left awake for 30 min but prevented from oviposition, or (3) anaesthetized with carbon dioxide for 30 min to interfere with the muscular control presumably required for sperm transport from the site of insemination to the spermathecae. For each female, we estimated the proportion of the second male's sperm stored in her spermathecae (S(2)value), using sperm length as a male marker. After copulation, the S(2)values in the singlet and doublet spermathecae differed significantly, indicating differential sperm storage during copulation. Postcopulatory treatment affected differential sperm storage significantly. Females dissected immediately had lower S(2)values in the doublet than in the singlet spermatheca, while females left awake showed the reverse pattern for the same two males. This reversal did not occur when females were treated with carbon dioxide. The results indicate differential storage of sperm from different males during copulation and that female muscular activity can affect storage and separation of competing ejaculates beyond copulation. Copyright 2000 The Association for the Study of Animal Behaviour.

Journal Article↗
PubMed1999

Relation of nebulin and connectin (titin) to dynamics of actin in nascent myofibrils of cultured skeletal muscle cells.

Cultured embryonic chicken skeletal muscle cells microinjected with rhodamine (rh)-labeled actin were stained with antibodies against nebulin and connectin (titin). In premyofibril areas, nebulin was observed as dotted structures, many of which were arranged in a linear fashion. These structures were associated with injected rh-actin. Among these linearly arranged dots of nebulin and rh-actin, numerous small nebulin dots without rh-actin incorporation were scattered. It is probable that the dots of nebulin and/or its associated protein(s) represent a preformed scaffold upon which actin monomers accumulate; exogenously introduced actin associates initially with small nebulin dots, which in turn coalesce to form rh-actin dots and are arranged linearly. In developing myofibrils, two patterns of nebulin distribution were found: "singlets" and "doublets." Recovery of rh-actin's fluorescence after photobleaching was slowest in the nonstriated dotted portions, followed by the striated myofibrillar portions with nebulin singlets and those with doublets, in that order. Thus, the distribution patterns of nebulin seem to be related to the accessibility/exchangeability of actin into nascent myofibrils. It is possible that early nebulin filaments exhibiting singlets are not tightly associated with actin filaments and that this loose association allows myofibrils to exchange nonadult isoforms of actin and other proteins into adult types. Connectin formed a striated pattern before the formation of rh-actin/nebulin striations. It appears that connectin does not have any significant role in the accessibility of actin into nascent myofibrils.

Actins↗
PubMed2000

The multidimensional filter diagonalization method.

The theory of the multidimensional filter diagonalization method (FDM) described in the previous paper (V. A. Mandelshtam, 2000, J. Magn. Reson. 144, 343-356 (2000)) is applied to NMR time signals with up to four independent time variables. Direct projections of the multidimensional time signals produce new kinds of 2D spectra. The resolution obtained by FDM can be far superior to that obtained by conventional phase-sensitive FT processing, and correlation peaks in heteronuclear and homonuclear experiments can be condensed to sharp singlets, removing all spin-spin couplings. Examples of singlet-HSQC and singlet-TOCSY spectra show big gains in resolution. It is not necessary to have a finely digitized spectrum, in which the individual multiplet components are resolved, for the methods to work. Examples of FDM spectra, ranging from simple organic molecules and steroids to metalloproteins, are shown.

Artifacts↗
PubMed1981

The genetics of dopa decarboxylase in Drosophila melanogaster. IV. The genetics and cytology of the 37B10-37D1 region.

Of 204 mutations located in the 8-12 band Df(2L)130 region, 37B9-C1,2;37D1-2, 199 have been assigned to twelve lethal genes and one visible gene (hook). The 13 genes are not evenly distributed. Twelve, (possibly all thirteen) are in the seven band region 37B10-C4 giving a gene-to-band ratio of almost two. Only one gene, 1(2)37Cf, may be in the four band region 37C5-7, and none are localized in band 37D1. In situ hybridization places the dopa decarboxylase structural gene, Ddc, in or very close to band 37C1,2 (Hirsh and Davidson, 1981). The chi methyl dopa hypersensitive gene, 1(2) and, is 0.002 map units distal to Ddc. Df(2L)VA17, 37C1,2; 37F5-38A1 may actually break in the 37C1,2 singlet. It places six genes, hook, 1(2) and, and four lethal genes, in a maximum of five bands, 37B10, 11, 12, 13 and perhaps part of the 37C1,2 singlet and localizes six genes, Ddc plus five lethal genes, in a maximum of three bands; probably part of the 37C1,2 singlet plus bands, C3, and C4. Wild type activity of five of twelve lethal genes is necessary for female fertility. --Band 37C5 puffs at the time of pupariation; Puff Stages 8-10. Twelve of eighteen alleles of 1(2)37Cf have been examined as heterozygotes over CyO and none affect the appearance of a homozygous 37C5 puff. --Of the 204 mutations considered here only one Ddcpl, affects the function of more than one gene. It eliminates Ddc+ and 1(2)37Ca+ function and at 30 degrees C reduces 1(2)37Ce+ function. It is not a deficiency but could be a polar mutant.

Animals↗
PubMed1979

Evolutionary potential: a mathematical hypothesis of mouse hemoglobin beta chain evolution.

This paper examines the possibility that the linkage arrangements and regulatory properties of genes may be influenced by selection. A mathematical hypothesis is developed in order to show how selective properties of hemoglobin beta chains could have influenced the linkage and regulation of their structural genes. The hypothesis is applied to the case of mouse hemoglobin beta chains. In most mice, closely-linked pairs of loci (doublets) code for two structurally divergent beta chains in unequal amounts. Some mouse strains have singlet alleles, however, coding for another beta chain variant. With the mathematical hypothesis, one can show that selectively determined "evolutionary potentials" may have favored changes in proportions of major and minor chains produced by a doublet allele. In the extreme case, zero production of the minor chain may give a selective advantage, leading to a singlet; conversely, selection may favor linking another gene to the singlet locus to give a doublet. A specific prediction of the model is the stable maintenance under certain conditions of multiple alleles at regulatory loci. The concept of evolutionary potential thus suggests that selection could have influenced the evolution of genotypic fitnesses, in addition to causing changes in gene frequencies as in standard population genetics models

Animals↗

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