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PubMed2004

Quantitative analysis of finger motion coordination in hand manipulative and gestic acts.

This article reports an experimental study that aimed to quantitatively analyze motion coordination patterns across digits 2-5 (index to little finger), and examine the kinematic synergies during manipulative and gestic acts. Twenty-eight subjects (14 males and 14 females) performed two types of tasks, both right-handed: (1) cylinder-grasping that involved concurrent voluntary flexion of digits 2-5, and (2) voluntary flexion of individual fingers from digit 2 to 5 (i.e., one at a time). A five-camera opto-electronic motion capture system measured trajectories of 21 miniature reflective markers strategically placed on the dorsal surface landmarks of the hand. Joint angular profiles for 12 involved flexion-extension degrees of freedom (DOF's) were derived from the measured coordinates of surface markers. Principal components analysis (PCA) was used to examine the temporal covariation between joint angles. A mathematical modeling procedure, based on hyperbolic tangent functions, characterized the sigmoidal shaped angular profiles with four kinematically meaningful parameters. The PCA results showed that for all the movement trials (n = 280), two principal components accounted for at least 98% of the variance. The angular profiles (n = 2464) were accurately characterized, with the mean (+/-SD) coefficient of determination (R2) and root-mean-square-error (RMSE) being 0.95 (+/-0.12) and 1.03 degrees (+/-0.82 degrees ), respectively. The resulting parameters which quantified both the spatial and temporal aspects of angular profiles revealed stereotypical patterns including a predominant (87% of all trials) proximal-to-distal flexion sequence and characteristic interdependence--involuntary joint flexion induced by the voluntarily flexed joint. The principal components' weights and the kinematic parameters also exhibited qualitatively similar variation patterns. Motor control interpretations and new insights regarding the underlying synergistic mechanisms, particularly in relation to previous findings on force synergies, are discussed.

Biomechanical Phenomena↗
PubMed1993

Estimation of the secondary structure and conformation of bovine lens crystallins by infrared spectroscopy: quantitative analysis and resolution by Fourier self-deconvolution and curve fit.

The secondary structure of six bovine lens protein fractions (two alpha, three beta and one gamma-crystallin) are examined in solution and in solid forms for the first time using FTIR spectroscopy. Films of the nuclear and cortical regions of the bovine lens are also examined. The structure is quantitatively estimated from the vibrational analysis of the resolution-enhanced amide-I profile achieved by Fourier self-deconvolution and linear least-squares curve-fit algorithm. All the protein fractions fold predominantly in a beta-pleated sheet structure with little or no alpha-helical domains in solution or in lyophilized solid form. These proteins also retain their predominant beta-sheet conformation in the cellular phospholipid environment of the lens, in conformity with the structure obtained for all the mammalian species examined to date. Despite structural homology, vibrational data indicate subtle structural differences within each class of the crystallins probably due to presence of several minor substructures/subconformations. Substantial high amounts of turns (approx. 40%) observed in the beta-fractions may have a fundamental implication in stabilizing the tertiary structure of the uniquely folded-proteins vital for the transparency of the lens. These proteins in solid KBr-matrix undergo a major structural change, induced primarily by ionic interactions which refold them in a helical conformation. IR spectroscopy together with band-narrowing procedures has proven to be an effective tool to obtain structural information of proteins in solution, as solid substrates or in a complex biological tissue, such as ocular lens.

Algorithms↗
PubMed1988

A quantitative analysis of 2-D gels identifies proteins in which labeling is increased following long-term sensitization in Aplysia.

Long-term memory for sensitization of the gill- and siphon-withdrawal reflex in Aplysia, produced by 4 days of training, is associated with increased synaptic efficacy of the connection between the sensory and motor neurons. This training is also accompanied by neuronal growth; there is an increase in the number of synaptic varicosities per sensory neuron and in the number of active zones. Such structural changes may be due to changes in the rates of synthesis of certain proteins. We have searched for proteins in which the rates of [35S]methionine labeling are altered during the maintenance phase of long-term memory for sensitization by using computer-assisted quantitative 2-D gel analysis. This method has allowed us to detect 4 proteins in which labeling is altered after 4 days of sensitization training.

Animals↗
PubMed1999

[TXRF technique and quantitative analysis of mollusc teeth].

Total reflection X-ray fluorescence (TXRF) analysis technique and the instrument with a short path, high efficiency, low power and small volume are briefly presented. The detection limit of the system are at pg-level for Cu and Mo target excitation. Teeth of a marine mollusc were measured quantitatively and the spectrum and analysis results were given.

Animals↗
PubMed1999

Quantitative analysis of liver fibrosis and stellate cell changes in patients with chronic hepatitis C after interferon therapy.

OBJECTIVE: The proliferation and differentiation of stellate (Ito, or fat-storing) cells into myofibroblast-like cells is responsible for the development of liver fibrosis. Using computer image analysis, we evaluated the changes of alpha smooth muscle actin-positive stellate cells and liver fibrosis after interferon-alpha or -beta (IFN-alpha, beta) therapy in patients with chronic hepatitis C. METHODS: Patients with chronic hepatitis C were treated with IFN-alpha or -beta and were divided into three groups on the basis of clinical criteria; a complete responder group (CR, 18 of 51), a partial responder group (PR, 17 to 51), and a nonresponder group (NR, 16 of 51). Liver fibrosis was assessed from specimens stained with Sirius red and was quantitated by computer image analysis. We also evaluated alpha-smooth muscle actin expression in the liver before and after IFN therapy by a semiquantitative scoring method (the alpha-smooth muscle actin index). RESULTS: Before IFN therapy, a large number of stellate cells expressing a-smooth muscle actin were present in the liver biopsy specimens. There was a significant correlation (r = 0.699, p < 0.05) between the change in the percent area of fibrosis and the alpha-smooth muscle actin index before and after IFN therapy in all groups. The complete responder group also showed a significant reduction of a-smooth muscle actin-expressing cells that was correlated with the reduction of serum ALT (r = 0.686, p < 0.05). CONCLUSION: These results suggest a-smooth muscle actin-expressing cells are responsible for liver fibrosis, and the elimination of factors stimulating matrix synthesis (e.g., hepatitis virus) may decrease liver fibrosis.

Actins↗
PubMed1992

Quantitative analysis of amino acid oxidation and related gluconeogenesis in humans.

Significant gaps remain in our knowledge of the pathways of amino acid catabolism in humans. Further quantitative data describing amino acid metabolism in the kidney are especially needed as are further details concerning the pathways utilized for certain amino acids in liver. Sufficient data do exist to allow a broad picture of the overall process of amino acid oxidation to be developed along with approximate quantitative assessments of the role played by liver, muscle, kidney, and small intestine. Our analysis indicates that amino acids are the major fuel of liver, i.e., their oxidative conversion to glucose accounts for about one-half of the daily oxygen consumption of the liver, and no other fuel contributes nearly so importantly. The daily supply of amino acids provided in the diet cannot be totally oxidized to CO2 in the liver because such a process would provide far more ATP than the liver could utilize. Instead, most amino acids are oxidatively converted to glucose. This results in an overall ATP production during amino acid oxidation very nearly equal to the ATP required to convert amino acid carbon to glucose. Thus gluconeogenesis occurs without either a need for ATP from other fuels or an excessive ATP production that could limit the maximal rate of the process. The net effect of the oxidation of amino acids to glucose in the liver is to make nearly two-thirds of the total energy available from the oxidation of amino acids accessible to peripheral tissues, without necessitating that peripheral tissues synthesize the complex array of enzymes needed to support direct amino acid oxidation. As a balanced mixture of amino acids is oxidized in the liver, nearly all carbon from glucogenic amino acids flows into the mitochondrial aspartate pool and is actively transported out of the mitochondria via the aspartate-glutamate antiport linked to proton entry. In the cytoplasm the aspartate is converted to fumarate utilizing urea cycle enzymes; the fumarate flows via oxaloacetate to PEP and on to glucose. Thus carbon flow through the urea cycle is normally interlinked with gluconeogenic carbon flow because these metabolic pathways share a common step. Liver mitochondria experience a severe nonvolatile acid load during amino acid oxidation. It is suggested that this acid load is alleviated mainly by the respiratory chain proton pump in a form of uncoupled respiration.(ABSTRACT TRUNCATED AT 400 WORDS)

Amino Acids↗
PubMed1985

[Quantitative analysis of myocardial perfusion by digital subtraction angiography].

Digital subtraction angiography (DSA) has been adopted to detect ischemic myocardial areas and to quantitatively evaluate the degrees of myocardial perfusion abnormalities. Subtraction for selective coronary arteriography was performed sequentially between mask and enhanced images in the same cardiac phases by means of ECG signals. We obtained three distinct perfusion phases which we termed the arterial, capillary, and venous phases. Densitometry of the circumferential cardiac wall was performed on these sequential images. The results were compared with 201Tl myocardial scintigrams and cine angiograms. In the arterial phase, the abnormalities of the coronary artery, such as stenosis, obstruction and collaterals were represented. In the capillary phase, contrast materials served as markers of myocardial perfusion and delineated infarctions as areas of low contrast enhancement compared to the normally perfused myocardium. In the venous phase, the infarcted areas were represented as areas with greater relative contrast enhancement than that of the normal myocardium. Circumferential analysis of perfusion could provide more detailed information about myocardial ischemic areas and the degrees of ischemia. Although we used invasive selective coronary arteriography, DSA techniques have numerous merits such as excellent temporal resolution, spatial resolution, and good contrast resolution, over conventional methods. Quantitative DSA methodology which we developed provided not only anatomical information about the main coronary arteries but new information about abnormalities of peripheral myocardial perfusion.

Angiography↗
PubMed2005

Quantitative analysis of backbone dynamics in a crystalline protein from nitrogen-15 spin-lattice relaxation.

A detailed analysis of nitrogen-15 longitudinal relaxation times in microcrystalline proteins is presented. A theoretical model to quantitatively interpret relaxation times is developed in terms of motional amplitude and characteristic time scale. Different averaging schemes are examined in order to propose an analysis of relaxation curves that takes into account the specificity of MAS experiments. In particular, it is shown that magic angle spinning averages the relaxation rate experienced by a single spin over one rotor period, resulting in individual relaxation curves that are dependent on the orientation of their corresponding carousel with respect to the rotor axis. Powder averaging thus leads to a nonexponential behavior in the observed decay curves. We extract dynamic information from experimental decay curves, using a diffusion in a cone model. We apply this study to the analysis of spin-lattice relaxation rates of the microcrystalline protein Crh at two different fields and determine differential dynamic parameters for several residues in the protein.

Bacterial Proteins↗
PubMed2006

Towards quantitative analysis of retinal features in optical coherence tomography.

The purpose of this paper was to propose a new computer method for quantitative evaluation of representative features of the retina using optical coherence tomography (OCT). A multi-step approach was devised and positively tested for segmentation of the three main retinal layers: the vitreo-retinal interface and the inner and outer retina. Following a preprocessing step, three regions of interest were delimited. Significant peaks corresponding to high and low intensity strips were located along the OCT A-scan lines and accurate boundaries between different layers were obtained by maximizing an edge likelihood function. For a quantitative description, thickness measurement, densitometry, texture and curvature analyses were performed. As a first application, the effect of intravitreal injection of triamcinolone acetonide (IVTA) for the treatment of vitreo-retinal interface syndrome was evaluated. Almost all the parameters, measured on a set of 16 pathologic OCT images, were statistically different before and after IVTA injection (p<0.05). Shape analysis of the internal limiting membrane confirmed the reduction of the pathological traction state. Other significant parameters, such as reflectivity and texture contrast, exhibited relevant changes both at the vitreo-retinal interface and in the inner retinal layers. Texture parameters in the inner and outer retinal layers significantly correlated with the visual acuity restoration. According to these findings an IVTA injection might be considered a possible alternative to surgery for selected patients. In conclusion, the proposed approach appeared to be a promising tool for the investigation of tissue changes produced by pathology and/or therapy.

Anti-Inflammatory Agents↗
PubMed1991

Rat small intestinal mucins: a quantitative analysis.

Although much is known about the qualitative distribution of mucin-secreting goblet cells in the small intestine, the quantitative distribution of stored mucins remains undefined. The purpose of this study was to determine the distribution of neutral stored mucin in the rat small intestine by using morphometric techniques and once established, to verify that this methodology could detect secretion in animals exposed to a known mucin secretagogue. Twelve male Wistar rats (five baseline, five pilocarpine-treated, and two vehicle controls) were fixed by vascular perfusion. After a brief fixation the intestine was removed, cut into 10 equal segments, sliced, and fixed overnight. Methacrylate sections from each segment were stained with periodic acid-Schiff and toluidine blue. For morphometry, the volume of epithelium per surface area of epithelial basal lamina was calculated with a Merz grid. The volume density of stored mucin per epithelium was determined by point-counting on a square lattice grid. Volumes were related to either surface area of epithelial basal lamina or mucosal surface area. Due mostly to contributions by villus stored mucin, the total amount of product was found to increase proximally to distally in the small bowel, with the most dramatic increases occurring in the first three segments. When subjected to pilocarpine, a massive secretory response was evoked, resulting in a near total depletion of crypt stored mucin at all levels of the small bowel. Secretion of villus stored mucin also occurred throughout the small intestine, however reaching levels of significance at only a few points. This study describes the distribution of stored mucin in the small intestine under baseline and accelerated secretory conditions.

Animals↗
PubMed1984

Quantitative analysis of the structural events associated with antidiuretic hormone-induced volume reabsorption in the rabbit cortical collecting tubule.

We quantitatively examined the influence of antidiuretic hormone (ADH)-dependent volume reabsorption on the morphology of the rabbit cortical collecting tubule. Estimates of cell volume and the geometry of the lateral intercellular spaces were extracted from differential interference contrast images of perfused nephron segments using the morphometric procedures described in the preceding paper (K.L. Kirk , D.R. DiBona and J.A. Schafer, J. Membrane Biol. 79:53-64, 1984). The results indicate that ADH addition in the presence, but not absence, of a lumen-to-bath osmotic gradient (130 to 290 mOsm) stimulated transepithelial volume flow and simultaneously increased the volumes of both the cells (+28%) and the lateral intercellular spaces (+78%). In addition, the formation of cytoplasmic vacuoles could be observed during the latter stages of the swelling response, and vacuole formation continued well after new steady-state values for transepithelial water flow and cell volume had been reached. Two main conclusions can be drawn from these results. First, the cytoplasmic vacuoles comprise a slowly filling compartment that lies in parallel to the transepithelial pathway for ADH-stimulated volume reabsorption. Second, from the magnitude of the cell volume increase, we estimate that the hydraulic conductivities of the opposing cell membranes are nearly equal during maximal ADH stimulation.

Absorption↗
PubMed1988

Ethanol exposure following unilateral entorhinal deafferentation alters synaptic reorganization in the rat dentate gyrus: a quantitative analysis of acetylcholinesterase histochemistry.

The phenomenon of reactive synaptogenesis in the dentate gyrus following partial deafferentation was used to assess quantitatively the effects of ethanol exposure on neuronal plasticity. Adult male Long-Evans rats received unilateral lesions of the entorhinal cortex, followed by 40 days of dietary ethanol exposure. Synaptic reorganization of the commissural/associational (C/A) and cholinergic (primarily septal) afferents was evaluated in the dentate gyrus processed for acetylcholinesterase (AChE) histochemistry. The widths and optical densities of several laminae in the molecular layer were measured using a computer-based digital imaging system. The degree of reorganization was assessed by comparing the lesioned side to the unlesioned side in each animal (difference scores were calculated). In the exposed blade of the dentate gyrus, the lesion-induced expansion of the C/A width was reduced significantly in the ethanol group. However, in the buried blade, there was an actual shrinkage of the C/A zone in the ethanol group. There was also a tendency for less "clearing" or lightening of the AChE staining in the C/A zone of both blades. On the lesioned side, the ethanol group also displayed a significantly greater condensation or darkening of the AChE staining in the proximal outer molecular layer than the pair-fed control group. The supragranular layer of both blades ipsilateral to the lesion was reduced in width in the ethanol group. These results indicate that exposure to ethanol following partial deafferentation disrupts the normal pattern of synaptic reorganization in the dentate gyrus.

Acetylcholinesterase↗
PubMed1989

Quantitative analysis of polyols in human plasma and cerebrospinal fluid.

We used gas chromatography in conjunction with flame ionization detection to quantitate nine polyols and aldo and keto sugars (as silyl derivatives) in human plasma and cerebrospinal fluid (CSF). Rhamnose, not found in CSF or plasma, was used as an internal standard with a lower limit of quantitation of 0.4 mg/l. CSF polyol and sugar concentrations (mean +/- S.D.) in fourteen healthy subjects (age range 27.1-85.9 years) were: anhydroglucitol, 19.9 +/- 5.3 mg/l; arabitol, 4.8 +/- 0.9 mg/l; erythritol, 2.4 +/- 0.5 mg/l; myoinositol, 28.6 +/- 8.3 mg/l; ribitol, 1.6 +/- 0.1 mg/l; fructose, 25.5 +/- 11.1 mg/l; glucose, 587 +/- 70 mg/l; glucitol, 7.7 +/- 1.5 mg/l; and mannose, 10.6 +/- 2.4 mg/l. The respective plasma concentrations were 30.6 +/- 11.5, less than 0.4, 0.4 +/- 0.2, 6.3 +/- 2.6, less than 0.4, 23.4 +/- 21.4, 897 +/- 214, less than 0.4 and 13.7 +/- 6.3 mg/l. Polyol CSF-to-plasma concentration ratios greater than 2 were observed for myoinositol, erythritol, arabitol, glucitol and ribitol, indicative of active accumulation or synthesis of these polyols within the central nervous system.

Adult↗
PubMed2005

Parametric and quantitative analysis of MR renographic curves for assessing the functional behaviour of the kidney.

The aim of this study was to refine the description of the renal function based on MR images and through transit-time curve analysis on a normal population and on a population with renal failure, using the quantitative model of the up-slope. Thirty patients referred for a kidney MR exam were divided in a first population with well-functioning kidneys and in a second population with renal failure from ischaemic kidney disease. The perfusion sequence consisted of an intravenous injection of Gd-DTPA and of a fast GRE sequence T1-TFE with 90 degrees magnetisation preparation (Intera 1.5 T MR System, Philips Medical System). To convert the signal intensity into 1/T1, which is proportional to the contrast media concentration, a flow-corrected calibration procedure was used. Following segmentation of regions of interest in the cortex and medulla of the kidney and in the abdominal aorta, outflow curves were obtained and filtered to remove the high frequency fluctuations. The model of the up-slope method was then applied. Significant reduction of the cortical perfusion (Qc = 0.057+/-0.030 ml/(s 100 g) to Qc = 0.030 +/- 0.017 ml/(s 100 g), P < 0.013) of the medullary perfusion (Qm = 0.023 +/- 0.018 ml/(s 100 g) to Qm = 0.011 +/- 0.006 ml/(s 100 g), P < 0.046) and of the accumulation of contrast media in the medulla (Qa = 0.005 +/- 0.003 ml/(s 100 g) to Qa = 0.0009 +/- 0.0008 ml/(s 100 g), P < 0.001) were found in presence of renal failure. High correlations were found between the creatinine level and the accumulation Qa in the medulla (r2 = 0.72, P < 0.05), and between the perfusion ratio Qc/Qm and the accumulation Qa in the medulla (r2 = 0.81, P < 0.05). No significant difference was found in times to peak between both populations despite a trend showing Ta the time to the end of the increasing contrast accumulation period in the medulla, arriving later for renal failure. Advances in MR signal calibration with the building of quantitative model such as the up-slope allow to assess kinetic and haemodynamic and functional parameters of the diseased kidney.

Contrast Media↗
PubMed2004

Quantitative analysis of 33 benzodiazepines, metabolites and benzodiazepine-like substances in whole blood by liquid chromatography-(tandem) mass spectrometry.

A quantitative method using high-performance liquid chromatography-mass spectrometry (LC-MS, ion trap) after matrix supported liquid-liquid extraction is described for the simultaneous determination in whole blood of 33 benzodiazepines including metabolites and benzodiazepine-like substances. The limits of detection (LOD) range from 0.0001 to 0.0126 mg/l. Linearity is satisfactory for all compounds. The extraction recoveries for the benzodiazepines in whole blood are between 60 and 91%, desmethyldiazepam, OH-bromazepam and brotizolam excepted. Selectivity, accuracy and precision are satisfactory for clinical and forensic purposes.

Benzodiazepines↗
PubMed2001

Quantitative analysis of specific mRNA species in minute cell samples by RT-PCR and flow cytometry.

A method for the quantitative determination of specific mRNAs in small numbers of cells, freshly isolated from tissues or early cell cultures, was developed by combining quantitative reverse transcription-polymerase chain reaction (RT-PCR) and quantitative flow cytometry. Freshly isolated umbilical vein endothelial cells were sorted by flow cytometry and then lysed. The number of cells in the lysate was determined by counting of nuclei after propidium iodide staining using flow cytometry. The number of plasminogen activator inhibitor-1 (PAI-1) mRNA copies per cell was determined by quantitative RT-PCR using point-mutated PAI-1 cRNA as an internal standard. The cells were shown to contain 400-900 copies of PAI-1 mRNA molecules per cell which confirms that endothelial cells in vivo express PAI-1. PAI-1 mRNA expression was also analyzed in small numbers of endothelial cells in primary culture in basal conditions and after incubation with different interleukins. The method allowed reliable and reproducible estimation of the number of mRNA copies per cell from original cell samples containing less than 1000 cells. This method can be used for the quantitative determination of various mRNA species in specified cell populations from small tissue samples or cultured cells.

Cell Count↗
PubMed1996

Validated capillary electrophoretic method for the quantitative analysis of histamine acid phosphate and/or benzalkonium chloride.

A novel capillary electrophoresis method has been developed and validated for the quantitative determination of histamine acid phosphate (HAP) and/or benzalkonium chloride (BKC). The solutes were separated using a pH 2.5 phosphate electrolyte with detection at 200 nm. Acceptable precision was obtained using internal standardisation. The method was also acceptable for determining levels of histidine which is an impurity in HAP. Profiling of BKC homologues was demonstrated for batch identity purposes. This method is used routinely and it is intended to register this method in the British Pharmacopoeia to supplement current test methods of TLC and HPLC.

Anti-Infective Agents, Local↗
PubMed2001

Quantitative analysis of rat inner ear blood flow using the iodo[(14)C]antipyrine technique.

A number of different qualitative and quantitative techniques have been used to measure inner ear blood flow and all have required that the animal be anesthetized. It is well known that anesthesia can cause a variety of circulatory as well as other systemic changes. In this study, we have employed a technique commonly used for quantifying brain blood flow, the iodo[(14)C]antipyrine technique ([(14)C]IAP). Unlike other techniques, [(14)C]IAP can be used in unanesthetized animals under conditions that are nearly normal, it is non-invasive, it can be used reliably in regions of low local blood flow, and data can be acquired from both the periphery and central nervous system. Results show that blood flow to the lateral wall of the basal turn of the cochlea (387 +/- 19 microl/g/min) is significantly higher (P<0.001) than that of the utricular macula (189 +/- 23 microl/g/min), horizontal (186 +/- 22 microl/g/min), superior (185 +/- 22 microl/g/min), or posterior canal crista (185 +/- 25 microl/g/min). Surprisingly, blood flow to all of the vestibular end-organs is remarkably similar. The use of this technique should allow pharmacological experimentation on inner ear blood flow without the unknown complications of anesthesia or invasive procedures.

Animals↗

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