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PubMed2003

Disease resistance and abiotic stress tolerance in rice are inversely modulated by an abscisic acid-inducible mitogen-activated protein kinase.

Mitogen-activated protein kinase (MAPK) cascades play an important role in mediating stress responses in eukaryotic organisms. However, little is known about the role of MAPKs in modulating the interaction of defense pathways activated by biotic and abiotic factors. In this study, we have isolated and functionally characterized a stress-responsive MAPK gene (OsMAPK5) from rice. OsMAPK5 is a single-copy gene but can generate at least two differentially spliced transcripts. The OsMAPK5 gene, its protein, and kinase activity were inducible by abscisic acid as well as various biotic (pathogen infection) and abiotic (wounding, drought, salt, and cold) stresses. To determine its biological function, we generated and analyzed transgenic rice plants with overexpression (using the 35S promoter of Cauliflower mosaic virus) or suppression (using double-stranded RNA interference [dsRNAi]) of OsMAPK5. Interestingly, suppression of OsMAPK5 expression and its kinase activity resulted in the constitutive expression of pathogenesis-related (PR) genes such as PR1 and PR10 in the dsRNAi transgenic plants and significantly enhanced resistance to fungal (Magnaporthe grisea) and bacterial (Burkholderia glumae) pathogens. However, these same dsRNAi lines had significant reductions in drought, salt, and cold tolerance. By contrast, overexpression lines exhibited increased OsMAPK5 kinase activity and increased tolerance to drought, salt, and cold stresses. These results strongly suggest that OsMAPK5 can positively regulate drought, salt, and cold tolerance and negatively modulate PR gene expression and broad-spectrum disease resistance.

Abscisic Acid↗
PubMed2006

Comparative phylogeography of eastern chipmunks and white-footed mice in relation to the individualistic nature of species.

Palaeoecological studies have demonstrated that ecological communities as a whole did not remain stable throughout the climatic fluctuations of the Quaternary. The result is that long-term associations of species cannot be inferred by contemporary associations in ecological communities. Therefore, the evolutionary significance of any contemporary ecological interactions among species and of the biotic community within which species have evolved also cannot be assumed from contemporary conditions. Comparative phylogeographic data provide a method to identify species within ecological communities that have shared biogeographic histories. We present an example of a long-term association between populations of two mammalian species, eastern chipmunks (Tamias striatus) and white-footed mice (Peromyscus leucopus), which are commonly associated with deciduous forest habitats. The distribution of mitochondrial DNA variation in T. striatus and P. leucopus from previously glaciated regions of the eastern United States support the hypothesis that, in at least part of their range, genetic lineages of the two species have expanded from similar population sources since the Last Glacial Maximum. In addition, the spatial concordance of genetic lineages of T. striatus and P. leucopus with the oak-savannah forest formations of Wisconsin and Illinois, suggest that populations associated with this community colonized the area in association with a set of arboreal species that comprise their deciduous forest habitat.

Animals↗
PubMed2001

The implications of hormesis to ecotoxicology and ecological risk assessment.

Changes required for the explicit recognition of hormesis are outlined for both ecotoxicology and ecological risk assessment (ERA). A major research need is the extension of hormesis beyond chemical stressors to abiotic (e.g., habitat) and biotic stressors (e.g., species introductions, organism interactions). An overreaching research need is to determine for all stressors with model organisms, populations, and communities whether hormesis has positive, neutral, or adverse effects. The latter are the least likely; however, neutral effects cannot be ruled out. Based on our present state of knowledge, hormesis is likely to have more of an impact on ecotoxicology than on ERA. In the case of the latter, it is most likely to make a difference only in a detailed-level ecological risk assessment (DLERA), the most complex form of ERA. Further, for hormesis to be accepted fully into ecotoxicology or ERA will require a paradigm shift. Three ongoing paradigm shifts to which hormesis could be linked are: recognition of the low utility of no-observed-effects concentrations (NOECs); recognition of the need for special treatment of essential element dose concentration responses, which are similar to hormesis; and the replacement of environmental toxicology with ecological toxicology (ecotoxicology).

Adaptation, Physiological↗
PubMedDate not supplied

[Ecological regularities of the existence of pathogenic Yersinia in soil ecosystems].

In this review the data on the ecology of pathogenic Yersinia in soil ecosystems, based on prolonged observations, were analyzed and summarized. In contrast to saprophytic species, ubiquitously spread in nature, pathogenic representatives of the genus Yersinia occurred only in the soil of natural foci and of these, Y. pestis were found only in the soil of burrows of the main carriers. The complex of abiotic and biotic factors (temperature, humidity, chemical composition, interactions in biocenosis) which determined the possibility of the existence of Yersinia in the soil environment and the preservation of their pathogenic properties was considered. Special attention was paid to their geno-phenotypic variability as the main factor of the adaptation of the causative agents of plague, pseudotuberculosis and intestinal yersiniosis in the environment.

Adaptation, Physiological↗
PubMed2005

Ecological consequences of phenotypic plasticity.

Phenotypic plasticity is widespread in nature, and often involves ecologically relevant behavioral, physiological, morphological and life-historical traits. As a result, plasticity alters numerous interactions between organisms and their abiotic and biotic environments. Although much work on plasticity has focused on its patterns of expression and evolution, researchers are increasingly interested in understanding how plasticity can affect ecological patterns and processes at various levels. Here, we highlight an expanding body of work that examines how plasticity can affect all levels of ecological organization through effects on demographic parameters, direct and indirect species interactions, such as competition, predation, and coexistence, and ultimately carbon and nutrient cycles.

Journal Article↗
PubMedDate not supplied

Above- and below ground trophic interactions on creeping thistle (Cirsium arvense) in high- and low-diversity plant communities: potential for biotic resistance?

The capacity of local communities to control introduced plants is called biotic resistance. Biotic resistance has been almost exclusively tested for plant competition and above ground herbivores and pathogens, while neglecting root herbivores and soil pathogens. Here, we present biotic resistance by above- and below ground herbivores in concert, and relate the abundance of the plant enemies to the species diversity of the local plant communities. The study was carried out in a 7-year-old biodiversity field experiment. We used creeping thistle (Cirsium arvense) as a model, and quantified sap-sucking herbivores: above ground aphids, their antagonists, and root-feeding nematodes. As plant diversity treatments, we used field plots sown with high (15 plant species, HSD) or low (4 plant species, LSD) diverse seed mixtures in 1996 and that were not weeded. Creeping thistle became established spontaneously at the start of the experiment. In 2002, in HSD plots, 90 % of the plant community was made up by 11 species, compared to seven species in LSD plots. No differences were found for C. arvense abundance or biomass. Above ground, three aphid species were found on C. arvense-Uroleucon cirsii, Aphis fabae, and Macrosiphum euphorbiae, but the latter was found only in low densities. Significantly more aphid species were found on individual plants in HSD plots. Moreover, in HSD plots, on average 10 % of aphids were parasitized, while no parasitism was observed in LSD plots. In the root zone of C. arvense, significantly more nematodes were found in HSD than in LSD plots, and a significantly higher proportion of those nematodes were plant parasites. The dominant plant parasitic nematode in both treatments was Paratylenchus. We conclude that biotic resistance by natural enemies may be enhanced by plant species diversity, but that above- and below ground sap-sucking herbivores do not necessarily have to respond similarly to the diversity of the surrounding plant community.

Animals↗
PubMed2006

Plant proteome analysis: a 2004-2006 update.

Since the appearance of the review entitled "Plant Proteome Analysis" in Proteomics in February 2004 (Cánovas, F. M., Dumas-Gaudot, E., Recorbert, G., Jorrín, J. et al., Proteomics 2004, 4, 285-298), about 200 original articles focusing on plant proteomics have been published. Although this represents less than 1% of the global proteomics output during this period, it nevertheless reflects an increase in activity over the period 1999-2004. These papers concern the proteome of at least 35 plant species but have concentrated mainly on thale cress (Arabidopsis thaliana) and rice (Oryza sativa). The scientific objectives have ranged from a proteomic analysis of organs, tissues, cell suspensions, or subcellular fractions to the study of plant development and response to various stresses. A number of contributions have covered PTMs and protein interactions. The dominant analytical platform has been 2-DE coupled to MS, but "second generation" techniques such as DIGE, multidimensional protein identification technology, isotope-coded affinity tags, and stable isotope labeling by amino acids in cell culture have begun to make an impact. This review aims to provide an update of the contribution of proteomics to plant biology during the period 2004-2006, and is divided into six sections: introduction, subcellular proteomes, plant development, responses to biotic and abiotic stresses, PTMs, and protein interactions. The conclusions summarize a view of the major pitfalls and challenges of plant proteomics.

Arabidopsis↗
PubMed2004

The use of vapor phase extraction in metabolic profiling of phytohormones and other metabolites.

Through complex networks of signaling interactions, phytohormones regulate growth, development, reproduction and responses to biotic and abiotic stress. Comprehensive metabolomic approaches, seeking to quantify changes in vast numbers of plant metabolites, may ultimately clarify these complex signaling interactions and consequently explain pleiotropic effects on plant metabolism. Synergistic and antagonistic phytohormone signaling interactions, referred to as crosstalk, are often considered at the level of transduction without proper consideration of synthesis or accumulation of phytohormones because of the limitation and difficulty in quantifying numerous signals. Significant progress has recently been made in the expansion of metabolic profiling and analysis of multiple phytohormones [Birkemeyer et al. (J. Chromatogr. A, 2003, 993, 89); Chiwocha et al. (Plant J., 2003, 35, 405); Müller et al. (Planta, 2002, 216, 44); Schmelz et al. (Proc. Natl Acad. Sci. USA, 2003, 100, 10552)]. We recently presented a novel metabolic profiling approach to the analysis of acidic phytohormones and other metabolites based on a simplistic preparation scheme and analysis by chemical ionization-gas chromatography/mass spectrometry. We now provide a detailed description of this vapor phase extraction technique and use pathogen infection of Arabidopsis with Pseudomonas syringae DC3000 to illustrate metabolic changes in salicylic acid, cinnamic acid, jasmonic acid, indole-3-acetic acid, abscisic acid, unsaturated C(18) fatty acids, 12-oxo-phytodienoic acid, and phytotoxin coronatine. Directions for further method expansion are provided and include issues of recovery, derivatization, range of accessible analytes, optimization, reproducibility and future directions.

Arabidopsis↗
PubMed2006

Interactions between yeasts and grapevines: filamentous growth, endopolygalacturonase and phytopathogenicity of colonizing yeasts.

It has been clearly established that phytopathogenic fungi, bacteria, and viruses exert biotic stresses on plants. Much less is known, however, about the interactions between enological species of yeast and their host plants. In a previous study, we described how Saccharomyces cerevisiae, the most common enological yeast, can act as a grapevine (Vitis vinifera L.) pathogen, causing growth retardation or plant death. In the present in vitro study on 11 strains of yeast belonging to different genera, which often occur on the surfaces of vineyard grapes and V. vinifera, a link was found to exist between strain phytopathogenecity and pseudohyphal growth habits and/or endopolygalacturonase activity. The results obtained here are consistent with earlier findings showing that the phytopathogenicity of yeast strains depends on the filamentous growth process, and show that endopolygalacturonase alone is not responsible for the invasion of plants tissues. The mechanisms observed here may be of significant ecological importance and may help to explain the long periods of yeast survival found to occur in vineyards.

Ecosystem↗
PubMed2006

Effects of competition and coal-combustion wastes on recruitment and life history characteristics of salamanders in temporary wetlands.

Amphibians in natural systems must cope with a number of biotic and abiotic stressors that can potentially interact with pollutants to influence toxicity. Although interactive effects of short-lived pesticides with various environmental stressors have been studied, how persistent and bioaccumulative compounds such as metals interact with natural stressors to influence amphibians remains unexplored. We exposed the salamander Ambystoma talpoideum to coal-combustion wastes (a complex mixture of metals and metalloids, hereafter referred to as CCW) at low and high larval density throughout aquatic development in mesocosms simulating temporary wetlands. CCW and high density reduced survival to metamorphosis by 57-77% and 85-92%, respectively, and the effects of these two factors together were additive. Reduced metamorphosis was due in part to larval mortality prior to initiation of pond drying, but CCW and high density also extended the larval period, causing mortality of larvae that were not ready to metamorphose before the pond dried. To our knowledge, this is the first demonstration of a pollutant-induced extension of larval period leading to reduction in amphibian recruitment. Metamorphs were smaller in high density compared to low in reference ponds, but those from CCW emerged at similar sizes irrespective of density, suggesting less-than-additive effects of density and CCW on metamorph size. The adverse responses of salamanders to CCW were likely due to direct toxicity, as A. talpoideum metamorphs accumulated high concentrations of a suite of trace elements (As, Se, Sr, and V), and also to indirect effects on the community food web. We conclude that in no case did the addition of a natural stressor (high density) exacerbate CCW-related effects, but that the effects of CCW alone can be detrimental to larvae of salamanders that breed in temporary ponds.

Ambystoma↗
PubMed2001

Trade-off between chemical and biotic antiherbivore defense in the South East Asian plant genus Macaranga.

The plant genus Macaranga is known for its manifold mutualistic associations with ants. The plants provide food for the ants and in turn get protection from herbivores. Depending on the strength of the plant-ant interaction, the plant's investment in ants and the biotic defense derived from them is more or less effective. We conducted a comparative study on tannin content in 12 Macaranga species that were selected based on their associations with ants (three nonmyrmecophytes and nine myrmecophytes, three of which start their ontogeny as nonmyrmecophytes). Different developmental stages were investigated in three Macaranga species. Extracts of every individual plant analyzed for tannins were also tested for their effects on larval growth employing larvae of the common cutworm (Spodoptera littoralis). The studied Macaranga species differed significantly in their tannin contents as well as in the effects of their leaf extracts on the growth of S. littoralis larvae. A correlation analysis shows a connection between tannin contents and larval growth. High tannin contents and, thus more effective chemical defense, were observed in nonmyrmecophytic Macaranga species associated only facultatively with ants as compared to obligate myrmecophytes. Our study supports the hypothesis of a trade-off between chemical and biotic defense in the genus Macaranga.

Adaptation, Physiological↗
PubMed2006

Comparison of photosynthetic damage from arthropod herbivory and pathogen infection in understory hardwood saplings.

Arthropods and pathogens damage leaves in natural ecosystems and may reduce photosynthesis at some distance away from directly injured tissue. We quantified the indirect effects of naturally occurring biotic damage on leaf-level photosystem II operating efficiency (Phi(PSII)) of 11 understory hardwood tree species using chlorophyll fluorescence and thermal imaging. Maps of fluorescence parameters and leaf temperature were stacked for each leaf and analyzed using a multivariate method adapted from the field of quantitative remote sensing. Two tree species, Quercus velutina and Cercis canadensis, grew in plots exposed to ambient and elevated atmospheric CO(2) and were infected with Phyllosticta fungus, providing a limited opportunity to examine the potential interaction of this element of global change and biotic damage on photosynthesis. Areas surrounding damage had depressed Phi(PSII )and increased down-regulation of PSII, and there was no evidence of compensation in the remaining tissue. The depression of Phi(PSII) caused by fungal infections and galls extended >2.5 times further from the visible damage and was approximately 40% more depressed than chewing damage. Areas of depressed Phi(PSII) around fungal infections on oaks growing in elevated CO(2) were more than 5 times larger than those grown in ambient conditions, suggesting that this element of global change may influence the indirect effects of biotic damage on photosynthesis. For a single Q. velutina sapling, the area of reduced Phi(PSII) was equal to the total area directly damaged by insects and fungi. Thus, estimates based only on the direct effect of biotic agents may greatly underestimate their actual impact on photosynthesis.

Animals↗
PubMed1991

Mechanisms of host-tick contact with special reference to Amblyomma americanum (Acari: Ixodidae) in beef cattle forage areas.

At least five groups of parameters regulate contact between ticks and host animals. Group 1 (seasonal effects) and group 2 (daily effects) comprise abiotic parameters and include daylength, temperature, relative humidity, and interactions thereof. Groups 3, 4, and 5 consist of biotic parameters. These pertain to biological processes in ticks (group 3), such as hunger responses and spatial patterns in aphagous tick populations; biological processes in host animals (group 4), such as patterns of habitat use by host animals; and interactions between host animals and ticks (group 5). Host-tick contact is possible when ticks are hungry, when ticks exhibit a positive appetence response, and when ticks and host animals are together in time and space. A descriptive model is proposed to correlate these processes and interactions with the observed behavior of the host-tick contact system in nature. Emphasis in the model is placed on host activity and differences among host types.

Animals↗
PubMed2003

Coevolution in variable mutualisms.

Many mutualistic interactions are probably not mutualistic across all populations and years. This article explores consequences of this observation with a series of genetic models that consider how variable mutualisms coevolve. The first models, previously introduced in a general coevolutionary context, consider two coevolving species whose fitness interactions change between beneficial and antagonistic in response to independent spatial or temporal variation in the abiotic or biotic environment. The results demonstrate that both temporal and spatial variability in fitness interactions can cause partner species with tightly matched traits favored by unconditional mutualisms to be vulnerable to evolutionary invasion by alternative types. A new model presented here shows that an additional mutualistic species can have a similar effect and can even cause fitness interactions between the other two species to evolve. Under some conditions, the pairwise interactions can change unidirectionally from mutualistic to antagonistic, with virtually no evolutionary change in either partner species. In other cases, fitness interactions between the species pair can oscillate between mutualism and antagonism as a result of coevolution in the third species. Taken as a whole, these theoretical results suggest that many features of mutualistic coevolution can best be understood by considering spatial, temporal, and community-dependent patterns of fitness interactions.

Biological Evolution↗
PubMed1994

Potential of genes and gene products from Trichoderma sp. and Gliocladium sp. for the development of biological pesticides.

Fungal cell wall degrading enzymes produced by the biocontrol fungi Trichoderma harzianum and Gliocladium virens are strong inhibitors of spore germination and hyphal elongation of a number of phytopathogenic fungi. The purified enzymes include chitinolytic enzymes with different modes of action or different substrate specificity and glucanolytic enzymes with exo-activity. A variety of synergistic interactions were found when different enzymes were combined or associated with biotic or abiotic antifungal agents. The levels of inhibition obtained by using enzyme combinations were, in some cases, comparable with commercial fungicides. Moreover, the antifungal interaction between enzymes and common fungicides allowed the reduction of the chemical doses up to 200-fold. Chitinolytic and glucanolytic enzymes from T. harzianum were able to improve substantially the antifungal ability of a biocontrol strain of Enterobacter cloacae. DNA fragments containing genes encoding for different chitinolytic enzymes were isolated from a cDNA library of T. harzianum and cloned for mechanistic studies and biocontrol purposes. Our results provide additional information on the role of lytic enzymes in processes of biocontrol and strongly suggest the use of lytic enzymes and their genes for biological control of plant diseases.

Acetylglucosaminidase↗
PubMed2006

Shifts in grassland invasibility: effects of soil resources, disturbance, composition, and invader size.

There is an emerging recognition that invasibility is not an intrinsic community trait, but is a condition that fluctuates from interactions between environmental forces and residential characters. Elucidating the spatiotemporal complexities of invasion requires inclusion of multiple, ecologically variable factors within communities of differing structure. Water and nutrient amendments, disturbance, and local composition affect grassland invasibility but no study has simultaneously integrated these, despite evidence that they frequently interact. Using a split-plot factorial design, we tested the effects of these factors on the invasibility of C3 pasture communities by smooth pigweed Amaranthus hybridus L., a problematic C4 forb. We sowed seeds and transplanted 3-week old seedlings of A. hybridus into plots containing monocultures and mixtures of varying composition, subjected plots to water, soil disturbance, and synthetic bovine urine (SBU) treatments, and measured A. hybridus emergence, recruitment, and growth rate. Following SBU addition, transplanted seedling growth increased in all plots but differed among legume and nonlegume monocultures and mixtures of these plant types. However, SBU decreased the number and recruitment rate of emerged seedlings because high residential growth reduced light availability. Nutrient pulses can therefore have strong but opposing effects on invasibility, depending on when they coincide with particular life history stages of an invader. Indeed, in SBU-treated plots, small differences in height of transplanted seedlings early on produced large differences in their final biomass. All facilitative effects of small-scale disturbance on invasion success diminished when productivity-promoting factors were present, suggesting that disturbance patch size is important. Precipitation-induced invasion resistance of C3 pastures by a C4 invader was partly supported. In grazed grasslands, these biotic and environmental factors vary across scales and interact in complex ways to affect invasibility, thus a dynamic patch mosaic of differential invasion resistance likely occurs in single fields. We propose that disturbance patch size, grazing intensity, soil resource availability, and resident composition are inextricably linked to grassland invasions and comment on the utility of community attributes as reliable predictors of invasibility. Lastly, we suggest temporal as well as spatial coincidences of multiple invasion facilitators dictate the window of opportunity for invasion.

Amaranthus↗
PubMed2002

The spread of tobacco mosaic virus infection: insights into the cellular mechanism of RNA transport.

Interactions of plant cells with pathogens or other biotic or abiotic environmental factors can give rise to systemic defense responses that rely upon the cell-to-cell and systemic transport of specific signals. A novel type of systemic signaling was revealed by recent evidence indicating the existence of RNA species that travel cell to cell and through the vasculature. The most compelling evidence for intercellular and systemic transport of RNA in plants is provided by viroids and viruses that apparently use the endogenous transport machinery to spread infection. The cell to cell movement of plant viruses occurs through small pores in the cell wall known as plasmodesmata and depends on virus-encoded 'movement proteins'. This review summarizes current knowledge of Tobacco mosaic virus infection with emphasis on the mechanism by which this virus targets its RNA genome from sites of replication to plasmodesmata to achieve intercellular spread.

Actin Cytoskeleton↗
PubMed2000

avrPto enhances growth and necrosis caused by Pseudomonas syringae pv.tomato in tomato lines lacking either Pto or Prf.

AvrPto was introduced into three tomato genotypes with two biotic agents to study its role in compatible interactions. avrPto enhanced the capacity of the Pseudomonas syringae pv. tomato strain T1 to induce necrotic symptoms on tomato plants that lacked either Pto or Prf genes. The enhanced necrosis correlated with a small increase in bacterial growth. In planta expression of avrPto in isolation did not elicit necrosis in the absence of a functional Prf gene.

Genes, Plant↗