SEARCH · Search PubMed

Results for “Backfat thickness”

Search indexed PubMed citations on genomics, clinical trials, systematic reviews and public health. Explore titles, authors and supplied subject terms, then open the PubMed record.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 181 records · Page 10Linked to original sources

PubMed1990

Beta-adrenergic receptors and adenylate cyclase activity in heart, muscle and adipose tissue of German Landrace pigs selectively bred for differences in backfat deposition.

The density of beta-adrenergic receptors was examined in heart, muscle (m. longissimus dorsi) and backfat tissue of German Landrace pigs using (-)-[3H]-dihydroalprenolol. The animals were selected for high (E(+)-line) or low (E(-)-line) activity of lipogenic enzymes in backfat and for low backfat thickness (U(-)-line) based on ultrasonic measurement. An unselected control (K0-line) also exists. The correlated selection response on stress susceptibility (measured by halothane reaction and by meat quality parameters) showed the following sequence of selection lines: U- greater than E- greater than E+ greater than K0. The strains used for examination descended from the 9th generation (heart and muscle tissue) and the 10th generation (heart, muscle and adipose tissue) of this selection experiment. No further selection took place between the 9th and 10th generation. Basal adenylate cyclase activity was determined as well as (-)-Isoproterenol + GTP or sodium fluoride (NaF) stimulated activity in heart and muscle of the 10th generation measuring [3H]-cAMP formation from [3H]-ATP. A good correlation (r greater than or equal to 0.59, n = 9) between beta-adrenergic receptor density and adenylate cyclase activity was found which pointed to an efficient receptor-effector system. The number of beta-adrenergic receptors and adenylate cyclase activity was higher in the U(-)-line in all investigated tissues compared to the other lines in the 9th and 10th generation. Most differences between these lines were also significant.(ABSTRACT TRUNCATED AT 250 WORDS)

Adenylyl Cyclases↗

PubMed2003

Quantitative and molecular genetic determination of protein and fat deposition.

After 30 years of selection, breeding of the pig breed sus scrofa Piétrain has resulted in reduced backfat thickness (from 3.2 to 1.9 mm) and increased loin muscle area (40 to 60 cm2) which indicates high genetic determination of these body composition traits. The use of sophisticated quantitative genetic methods that include all genetic relationships of large populations has led to a high response to selection of these traits. Selection on feed intake, lean and fat tissue growth using nonlinear functions to optimise these traits during the entire growth period in a biological model offers the opportunity to further improve total genetic potential. Protein and lipid deposition rates during the entire growth period have to be known for this biological model to be applied; thus knowledge of the genetic background of these traits is of high economic value. With the use of molecular genetic methods, such as candidate gene and genome scan approaches, the identification of genes for obesity and growth can be obtained. In sus scrofa, candidate genes associated with obesity and growth include Leptin Receptor, Melanocortin-4 Receptor, Agouti related protein, Heart fatty acid binding protein 3, and Insulin-like growth factor 2. Some of these candidate genes also explain variation in obesity levels in humans. Initial genome-wide scans have identified quantitative trait loci (QTL) on chromosomes 1, 4, 5, 7 and X for obesity and on chromosomes 1, 4, 7, 8, 13 and 18 for growth. Physiological candidate genes and predispositional QTL for obesity are not always located on the same chromosome; this is known the "polygenic paradox". Use of a nonlinear growth function is recommended in order to give more insight into the physiological regulation of obesity traits. Sus scrofa is an excellent model organism to examine the genetic regulation of obesity. The conservation of DNA sequence and chromosomal segments between sus scrofa and homo sapiens will permit easy transfer of results to human studies.

Animal Husbandry↗

PubMed1979

The amino acid supplementation of barley for the growing pig. 2. Optimal additions of lysine and threonine for growth.

1. Thirty-three diets were made by adding to ground barley combinations of L-lysine (0--6.0 g/kg) and L-threonine (0--3.0 g/kg), together with vitamins and minerals. Each was given to two female and two castrated male pigs during their growth from 25 to 60 kg. 2. Growth rate increased from 0.36 kg/d to a maximum of 0.65 kg/d with additions of 3.8 g L-lysine/kg and 1.8 g L-threonine/kg; these values and the maximum gains achieved were slightly higher for castrates than for females. Minimum values for food conversion ratio of 2.84 for castrates and 3.06 for females were achieved with similar amino acid additions to those giving fastest growth. 3. Carcass fat, estimated by sepcific gravity, was least with the addition of 5.9 g L-lysine/kg, but continued to decrease up to the highest threonine concentrations. Backfat thickness was also reduced by amino acid additions but failed to reach a minimum.

Adipose Tissue↗

PubMed1986

Effect of heat on the nutritional value of lupin (Lupinus angustifolius)--seed meal for growing pigs.

1. Two experiments were conducted to determine the effects of heat on the nutritional value of lupin (Lupinus angustifolius cv. Uniharvest and Unicrop)-seed meal, relative to soya-bean meal, for growing pigs 2. In both experiments, values for carcass gain/d and food conversion ratio (FCR) on a carcass basis of pigs fed on the diets containing lupin-seed meal were inferior (P less than 0.05) to those produced by pigs fed on soya-bean meal. 3. In the first experiment, heating lupin seed at temperatures from 105 to 150 degrees for 15 min resulted in a linear depression in carcass gain/d, a quadratic increase in carcass FCR, a linear decrease in lean in the ham and a linear increase in backfat thickness. In the second experiment, autoclaving lupin seed from 5 to 45 min at 121 degrees resulted in a linear depression in carcass gain/d and a linear increase in carcass FCR. 4. The addition of L-lysine to the diets containing lupin-seed meal verified that lysine was limiting in both experiments. The additions of L-lysine did not overcome the differences in carcass gains/d of pigs fed on lupin-seed meal relative to those fed on diets containing soya-bean meal. 5. It is concluded that the low lysine availability in lupin-seed meal for pigs is not due to the presence of heat-labile anti-nutritional factors in the seed.

Amino Acids↗

PubMed1993

Microbial and nutritional aspects of feeding fermented feed (poultry by-products) to pigs.

Broiler by-products (heads, feet, and viscera) mixed with 4% dextrose were pasteurized for 4 min at 90 degrees C core temperature, cooled to 20 degrees C, and fermented with Lactobacillus plantarum as starter culture. These fermented poultry by-products were fed to 12 individually housed fattening pigs as part (17.6% of the dry matter) of their fattening ration, the remainder composed of compound pig feed. Control pigs received a compound pig feed only. Both groups of pigs were fed restrictively on the basis of body weight. The technical results of the pigs fed the experimental diet showed a significantly improved feed:gain ratio (2.46 vs 2.57), a significantly higher carcass weight (86.1 vs 81.8 kg), a lower meat percentage (50.9 vs 52.5%) and an increased backfat thickness (21.5 vs 18.7%). The bacterial flora in the intestinal tract of the pigs fed the experimental diet differed significantly from the control animals. Decreased colony counts of mesophilic aerobic bacteria, Enterobacteriaceae, enterococci and lactobacilli were found in the rectal content and the prevalence of salmonella was lower. It is suggested that the improved feed:gain ratio and the reduced bacterial activity of the measured groups of bacteria is a result of 1) the higher energy content of the diet, and(or) 2) an assumed enhanced digestibility of nutritional components in the diet, and(or) 3) the lower incidence of diarrhea in the pigs fed with fermented poultry by-products. This resulted in a lower contamination level of enteropathogenic bacteria like, salmonella and Escherichia coli, in the gastro-intestinal tract of the pigs fed fermented poultry by-products.

Animal Feed↗

PubMed2004

Characterization of porcine leptin receptor polymorphisms and their association with reproduction and production traits.

Fatness in pigs is of prime economic importance due to market incentives for production of lean pork and elevated fatness increasing the feed costs. Leptin (LEP) action, mediated through its specific receptors (LEPR), was reported to be involved in the regulation of fatness via feed intake, energy expenditure, and whole-body energy balance in pigs. In this study, we have designed 17 primer sets based on the human and mouse LEPR sequences and successfully amplified coding regions of 15 porcine LEPR exon fragments by polymerase chain reactions (PCR). Four single nucleotide polymorphisms (SNP) of Intron 2, Exons 2, 6, and 18 were found in Landrace, Yorkshire, and Duroc by mutagenetically separated-PCR (MS-PCR) and PCR-restriction fragment length polymorphisms (PCR-RFLP). Chi-square statistics was used to calculate homogeneity of genotypic frequencies of 4 gene polymorphisms for three breeds of animals. Effects of Intron 2, Exon 2, and Exon 18 polymorphisms on the reproduction trait such as litter sizes of sows were evident (p < 0.05) in Duroc and Yorkshire. There was no (p > 0.05) significant influence on the production trait of average daily gain due to four candidate gene polymorphisms in three porcine breeds. However, effects of Exon 6 and 18 polymorphisms on the production trait of backfat thickness were significant (p < 0.05) in Landrace and Yorkshire, respectively. Effects of Exon 18 polymorphisms on feed efficiency were also evident (p < 0.05) in Duroc.

Animals↗

PubMed2026

Genome-wide association studies for feed efficiency, production and feeding behavior traits in Canadian purebred Duroc pigs.

This study aimed to identify potential genetic variants and candidate genes associated with feed efficiency (FE), production, and feeding behavior traits in Canadian purebred Duroc pigs. Genome-wide association studies (GWAS) were conducted using 8,861 individuals and an imputed Affymetrix PigGen Canada 50K panel v2.0 using a linear mixed model (LMM) and a Bayesian B model. This analysis used an adjusted P-value threshold (ranging from 6.6 × 10-5 to 1.3 × 10-4) using a false-discovery rate to determine significance. The number of significant SNPs identified for each trait was as follows: average daily gain (ADG, 48), daily feed intake (DFI, 85), feed conversion ratio (FCR, 101), residual feed intake (RFI, 37), residual gain (RG, 64), residual intake and gain (RIG, 55), backfat thickness (BF, 100), loin depth (LD, 6), Kleiber's ratio (KR, 0), total time spent eating per day (TPD, 7), and number of visits to the feeder per day (NVD, 6). Several traits (BF, DFI, FCR, RFI, RG, and RIG) showed strong overlapping signals on chromosomes 7 and 10 with 24 shared significant SNPs, indicating potential shared genetic mechanisms. These traits also had 71 overlapping candidate genes, such as PACSIN1, PTCH1, ADIPOR1, and ITPR3, associated with glucose, lipid, and cholesterol metabolism. Well-known candidate genes in literature associated with growth and fatness such as MC4R and CDH20 were also identified to be associated with ADG, BF, FCR, and DFI in this study. Gene ontology enrichment analysis revealed that a set of the candidate genes were involved in the gonadotropin-releasing hormone (GnRH) and the platelet-derived growth factor (PDGF) signaling pathways. Overall, this study contributed to understanding the genetic architecture and provided a biological foundation for improving FE, production, and feeding behavior traits in Canadian Duroc pigs, facilitating the selection of more efficient pigs.

Sus scrofa↗

PubMed1984

Interrelationships among diet, age, fat deposition and lipid metabolism in growing steers.

Subcutaneous adipose tissue samples were obtained by biopsy technique and at slaughter from steers fed either a corn concentrate or pelleted alfalfa (roughage) diet. Steers fed the roughage diet had slightly greater metabolizable energy intakes than the concentrate-fed steers due to greater rates of feed intake; however, steers fed the concentrate diet had faster rates of gain, primarily in the fat depots. Diet had no effect on the incorporation of 14C-labeled acetate and lactate into fatty acids, although 3H2O incorporation into fatty acids was greater in the concentrate-fed steers. Although backfat thickness was 60% greater in the concentrate-fed steers, the number of adipocytes per gram adipose tissue was unaffected by diet, suggesting adipose cell hyperplasia. The activities of acetyl-CoA carboxylase, fatty acid synthetase, ATP citrate lyase, NADP+ malate dehydrogenase, and hexokinase were greater in the steers fed the concentrate diet; pyruvate kinase activity was unaffected by diet. Fatty acid synthesis and several lipogenic enzyme activities increased with age and then declined markedly by the time of the terminal biopsy. Basal and net rates of lipolysis generally were unaffected by diet but increased with age of the animal. As the animals gained weight, the ratio of net fatty acids released to glycerol released decreased, suggesting more extensive reesterification of fatty acids released during lipolysis.

Adipose Tissue↗

PubMed1984

Relative contributions of acetate, lactate and glucose to lipogenesis in bovine intramuscular and subcutaneous adipose tissue.

Intramuscular adipose tissue from the fifth-eighth thoracic vertebrae region of the longissimus dorsi muscle, and portions of the overlying subcutaneous adipose tissue, were obtained at 16 and 18 months of age from Angus steers fed ad libitum either a corn silage (low energy) or ground corn (high energy) diet. Carcass weight, backfat thickness, and kidney, pelvic and heart fat were significantly greater in the steers fed the high energy diet; however, there were no significant differences in marbling scores between diet groups. Additionally, feeding steers the high energy diet did not result in differences in adipocyte diameter or number of adipose cells per gram tissue in either adipose tissue depot. Intramuscular adipocytes had a peak diameter (the diameter represented by the greatest number of cells) of 104 +/- 2 microns; peak diameter in subcutaneous adipose tissue was 141 +/- 5 microns. The activities of ATP-citrate lyase and NADP-malate dehydrogenase increased with age in the subcutaneous adipose tissue; feeding steers the high energy diet increased enzyme activities further. Age and diet had no effect on enzyme activities in intramuscular adipose tissue. A similar pattern was observed for the incorporation of lipogenic precursors into fatty acids. Acetate provided 70-80% of the acetyl units to in vitro lipogenesis in subcutaneous adipose tissue, but only 10-25% in intramuscular adipose tissue. Conversely, glucose provided 1-10% of the acetyl units in subcutaneous adipose tissue, but 50-75% in the intramuscular depot.(ABSTRACT TRUNCATED AT 250 WORDS)

Acetates↗

PubMed1985

Relationships between blood groups, isozymes and halothane reaction in pigs from a selection experiment.

German Landrace pigs (n = 1500) were halothane-tested and blood samples were taken for the determination of A-O and H blood types as well as for the determination of PHI and 6-PGD isozymes. The pigs originated from two generations (7th and 8th) of a selection experiment 'selection for activity of NADPH-generating enzymes in backfat of pigs'. The selection lines are E-, E+ (selection for low and high enzyme activity), U- (selection for low ultrasonic backfat thickness) and K (control). Preliminary results show an average proportion of halothane-susceptible animals of 49%. The frequencies of halothane-positive pigs amount to 60%, 46%, 70% and 30% in lines E-, E+, U- and K, respectively. The investigation shows a non-random combination of the marker genes caused by linkage disequilibrium, especially in line E-. Recombination frequencies between the loci vary from 0% to 18%.

Animals↗

PubMed1989

Association of restriction fragment length polymorphisms of swine leucocyte antigen class I genes with production traits of Duroc and Hampshire boars.

Restriction fragment length polymorphism analyses of swine leucocyte antigen (SLA) class I genes were performed on 70 Duroc and 38 Hampshire boars from the 1986-87 national performance tests of each breed in the USA. Few boars were inbred. Southern blotting and hybridization procedures were performed on genomic DNA, isolated from white blood cells, using PvuII endonuclease and a swine major histocompatibility complex (MHC) class I probe. Durocs had an average of 11 restriction fragments, with the most common being in 63% of the boars and the least common appearing in only one boar. Hampshire boars had an average of 12 restriction fragments, with the most common appearing in 73% of the boars and the least common appearing in only one boar. Least squares procedures and stepwise regression methods were used to examine the association between DNA restriction fragments and the selection index (INDEX), average daily gain (ADG), average backfat thickness (BF), loin muscle area (LEA), and age at 104 kg (DAY104). In the Duroc breed one DNA restriction fragment was associated with decreased INDEX (P less than 0.05) and decreased ADG (P less than 0.05) whereas two other fragments were associated with increased BF (P less than 0.05). In the Hampshire breed two restriction fragments were associated with an increase in INDEX (P less than 0.05). Cluster analyses were used to group pigs of each breed on the basis of similar RFLP patterns. One cluster group in the Duroc breed was associated with lower average INDEX values (P less than 0.05), greater average DAY104 (P less than 0.05), and a larger mean LEA (P less than 0.05). In the Hampshire breed one cluster group was associated with lower INDEX (P less than 0.05). These results suggest there may be an association between swine MHC class I genes and performance traits in swine. The use of SLA class I restriction fragments, as genetic markers, may have potential in the future for improving pig performance.

Animal Husbandry↗

PubMed2006

An effect of a missense mutation in the porcine melanocortin-4 receptor (MC4R) gene on production traits in Polish pig breeds is doubtful.

A missense G-A SNP in the porcine melanocortin-4 receptor (MC4R) gene that causes an Asp-Asn substitution at position 298 of the corresponding MC4R protein is considered to be economically important, although published results on its effect are inconsistent. We analysed the association of this MC4R polymorphism with production traits in 679 gilts from two breeds, Polish Large White (PLW) and Polish Landrace (PL), as well as one synthetic line 990. The frequency of the A allele differed significantly among the breeds with frequencies of 0.76, 0.29 and 0.16 in PLW, PL and line 990 respectively. There was no evidence of an effect of this polymorphism on daily food intake, backfat thickness or abdominal fat. The A allele was correlated with higher test daily gains and lower levels of intramuscular fat in PL, and increased levels of intramuscular fat in PLW.

Animals↗

PubMed2006

Association of a melanocortin 4 receptor (MC4R) polymorphism with performance traits in Lithuanian White pigs.

The melanocortin 4 receptor is expressed in virtually all brain regions of mammals and plays an important role in energy homeostasis. Polymorphisms in this gene may thus be related to growth and obesity. In pigs, a non-synonymous polymorphic site was described (Asp298Asn) and demonstrated to affect cAMP production and to alter adenylyl cyclase signalling. Association studies revealed significant linkage of this mutation with production trait in pigs. In this study, 207 Lithuanian White pigs were genotyped at the MC4R locus and analysed on relationships between genotype and breeding values for several performance traits. The observed allele and genotype frequencies did not deviate significantly from Hardy-Weinberg equilibrium (wildtype allele 0.59; mutant allele 0.41) and are comparable with those described in other Large White populations. The mutant Asn298 allele of the MC4R gene was significantly associated with increased test daily gain, higher lean meat percentage and lower backfat thickness. There was a trend towards an improved feed conversion ratio (p = 0.065) in animals with the mutant allele whereas no significant effect was found on lifetime daily gain. These results indicate that the MC4R polymorphism should be integrated in selection programmes in the Lithuanian White to improve carcass composition.

Adenylyl Cyclases↗

PubMed2007

Effects of high-level dietary B-vitamins on performance, body composition and tissue vitamin contents of growing/finishing pigs.

Forty-eight growing pigs were randomly assigned to five dietary groups and penned individually. They received a diet based on barley, wheat, corn and soya bean meal according to requirement. The experimental groups were supplemented with 400% or 800% of vitamins B(2), B(6) and pantothenic acid, or 400% or 800% of biotin, while all other vitamins were administered according to requirement. Growth performance, carcass characteristics, aspartate aminotransferase (AST), and content of vitamins in blood, liver and muscles were recorded. Growth performance showed no influence of supplementation, while backfat thickness in the group with 800% B(2)/B(6)/pantothenic acid was significantly higher. Content of B(2) in blood, liver and muscle was similar in all groups. Content of B(6) in blood and liver showed significant differences according to supplementation. The content of vitamin B(6) in muscle in the experimental groups was significantly higher than that in the control group. The content of pantothenic acid in blood and muscle in the experimental groups was significantly higher, while in liver all groups were significantly influenced by the supplementation level. Biotin content in liver showed no influence, but the content in plasma was significantly higher in the experimental groups and the content in muscle was significantly higher according to supplementation. The activity of AST showed no significant influence of the dietary vitamin level, but it was obviously decreased in the groups supplemented with biotin. The findings indicate that the dietary supplementation of vitamin B(2), B(6), pantothenic acid and biotin could not improve performance, but the contents in blood, liver and muscle.

Animal Feed↗

PubMed1993

Blood pressure in the sow: an attempt of indirect measuring ante partum.

Farrowing disorders in the sow have detrimental consequences in pig farming and many points of the condition still remain obscure. It was suggested to investigate blood pressure since this might provide an early indication of farrowing disturbances. A first study involved 29 pregnant sows. Blood pressure was measured indirectly using a pediatric occlusive cuff unrolled around the base of the tail and connected to a manometer. The recordings were made on resting sows in recumbent position. The disposal was considered suitable. The values obtained showed a good repeatability. Then a prospective survey involving 122 sows was undertaken. Blood pressure was measured at the 111th day of pregnancy. Systolic values ranged from 89 to 142 mm Hg (mean: 112.4). Physical profile of the sows (weight, backfat thickness) slightly influenced systolic level. On the other hand the sows obtaining the lowest values for systolic pressure were more prone to develop a prolonged farrowing. According to the lack of a parallel direct blood pressure measurement, these results have to be taken with caution. The perspective of early detection of "at risk" individuals with respect to MMA through blood pressure measurement, needs further work.

Animals↗

PubMed1994

Pig welfare and carcase quality: a comparison of the influence of slaughter handling systems at two abattoirs.

Pigs from four farms (two producing 'easy' and two 'difficult to handle' pigs) were slaughtered at two abattoirs, each with two slaughter handling systems, so that 25 pigs of each behavioural type were slaughtered by all four handling systems on each day; there were 16 replicates (3200 pigs) in total. The pigs at abattoir X were electrically stunned, either in a floor pen holding five pigs or in a race-restrainer. At abattoir Y the pigs were stunned either in a floor pen holding five pigs or in a dip-lift carbon dioxide stunner. The following measurements were made: hot carcase weight and backfat thickness at P2, degree of rigor mortis 35 minutes post mortem, skin blemish, pH and muscle reflectance in the m longissimus dorsi at 60 minutes and 18 hours post mortem, and pH and muscle reflectance in the m adductor at 18 hours post mortem. At abattoir X, the pigs slaughtered in the race-restrainer had heavier carcases (74.0 kg vs 73.0 kg, P < 0.05), developed rigor mortis more rapidly (8.1 mm vs 7.3 mm, P < 0.01), had more skin blemish (2.8 vs 2.7, P < 0.01), paler m longissimus dorsi muscles after one hour (15.7 vs 13.9, P < 0.01) and 18 hours (27.8 vs 26.6, P < 0.05), and paler m adductor muscles (24.5 vs 22.7, P < 0.001) after 18 hours. At abattoir Y, the pigs handled through the floor pen system had more skin blemish (2.7 vs 2.6, P < 0.05) and a tendency to develop rigor mortis more quickly (6.11 vs 5.32, P = 0.089).(ABSTRACT TRUNCATED AT 250 WORDS)

Abattoirs↗

PubMed1999

Relationship between food deprivation before transport and aggression in pigs held in lairage before slaughter.

Pigs from three farms were deprived of food for up to one hour, 12 hours or 18 hours before being sent for slaughter. In lairage, the animals' behaviour was monitored, and at slaughter a blood sample was collected and analysed for cortisol, lactate and creatine phosphokinase, potential indicators of stress and physical activity. The carcases were assessed for skin damage as an index of fighting, and rigor in the hind leg as an indicator of stress and/or fatigue. Measurements were also made of cold carcase weight, backfat thickness and liver glycogen concentration. General activity was very high on entry to the lairage pen. Drinking and mounting occurred almost immediately. Fighting developed after an exploratory period, and could last up to 60 minutes. There were large differences in the behaviour of pigs from the three farms. Pigs from farm A fought frequently but showed little mounting activity, whereas pigs from farm C were involved in mounting but little fighting. The period of food deprivation had no effect on average skin damage or rigor score, but the frequency of carcases with the highest scores was different The pigs deprived of food for up to an hour had the lowest incidence of severe skin damage and high rigor scores. Boars had a higher incidence of severe skin damage but a lower incidence of carcases with a high rigor score than gilts. Liver glycogen was almost completely depleted in the pigs deprived of food for 12 and 18 hours and was lower in the pigs deprived for up to an hour than in animals fed immediately before slaughter. The period of food deprivation had no effect on the levels of cortisol, creatine phosphokinase or lactate in the blood.

Abattoirs↗

PubMed2003

Elucidation of correspondence between swine chromosome 4 and human chromosome 1 by assigning 27 genes to the ImpRH map, and development of microsatellites in the proximity of 14 genes.

Loci affecting swine intramuscular fat content, backfat thickness, carcass weight, and daily weight gain were assigned to regions of swine chromosome (SSC) 4, which were shown to correspond to human chromosome (HSA) 1p22--> q25 by ZOO-FISH, bidirectional chromosome painting, as well as by the linkage map of genes. In order to select candidate genes responsible for the above traits from the human genome database, precise correspondence between SSC4 and HSA1 is a prerequisite. In the present study, 27 genes, PTGFR, GBP1, GBP2, GFI1, GCLM, ABCD3, EXTL2, KCNA3, ADORA3, KCND3, WNT2B, NRAS, SYCP1, PTGFRN, IGSF2, NOTCH2, S100A10, SHC1, SSR2, LMNA, CCT3, CD5L, PEA15, FCER1G, EAT2, DDR2, and LAMB3, located in the HSA1 region corresponding to SSC4 or possibly SSC4, were assigned to the IMpRH map. The alignment of genes from centromere to telomere in the SSC4 q arm is basically conserved in HSA1p22-->q25 with the direction from the q arm to the p arm, which is in good agreement with results from linkage mapping. In addition, the present study first demonstrated that WNT2B residing in the middle of the HSA1 region was assigned to SSC18 with a high lod score (> 5), and that at least three intrachromosomal rearrangements occurred in the region in the process of swine and human evolution. PTGFR, and LAMB3 localized at both ends of the HSA1 region were assigned to SSC6 and SSC9, respectively, which is consistent with regional correspondence reported earlier. In the course of the above analysis, microsatellite markers were developed in the proximity of eleven genes localized on SSC4, and three genes on other swine chromosomes.

Animals↗