PubMed · 9398069
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R Wiesendanger. 1997-11-25. Scanning-probe-based science and technology.. https://doi.org/10.1073/pnas.94.24.12749
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This communication provides a facile method for distributing and dispersing molecules within a molecular template. Using the self-assembled template of oligo(phenylene-ethynylene) (OPE), organic molecules such as coronene (COR) and biomolecules such as tripeptide are controllably distributed and dispersed within this molecular template on highly oriented pyrolytic graphite (HOPG) surfaces. COR molecules were controllably distributed into various regular arrays by simply adjusting the molecular molar ratio, while tripeptide molecules were uniformly positioned at the vacancies of the OPE template.
We present a low-temperature scanning tunneling microscopy (STM) study on the supramolecular ordering of tetrapyridyl-porphyrin (TPyP) molecules on Ag(111). Vapor deposition in a wide substrate temperature range reveals that TPyP molecules easily diffuse and self-assemble into large, highly ordered chiral domains. We identify two mirror-symmetric unit cells, each containing two differently oriented molecules. From an analysis of the respective arrangement it is concluded that lateral intermolecular interactions control the packing of the layer, while its orientation is induced by the coupling to the substrate. This finding is corroborated by molecular mechanics calculations. High-resolution STM images recorded at 15 K allow a direct identification of intramolecular features. This makes it possible to determine the molecular conformation of TPyP on Ag(111). The pyridyl groups are alternately rotated out of the porphyrin plane by an angle of 60 degrees.
A nanoscale understanding of the complex dynamics of large molecules at surfaces is essential for the bottom-up design of molecular nanostructures. Here we show that we can change the diffusion coefficient of the complex organic molecule known as Violet Lander (VL, C(108)H(104)) on Cu(110) by two orders of magnitude by using the STM at low temperatures to switch between two adsorption configurations that differ only in the molecular orientation with respect to the substrate lattice. From an interplay with molecular dynamics simulations, we interpret the results within a lock-and-key model similar to the one driving the recognition between biomolecules: the molecule (key) is immobilized only when its orientation is such that the molecular shape fits the atomic lattice of the surface (lock); otherwise the molecule is highly mobile.