Tracking Somatic Mutations for Lineage Reconstruction.

Yaara Neumeier; Ofir Raz; Liming Tao; Zipora Marx; Ehud Shapiro

doi:10.1007/978-1-0716-4310-5_2

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Tracking Somatic Mutations for Lineage Reconstruction.

Yaara Neumeier·Ofir Raz·Liming Tao·Zipora Marx·Ehud Shapiro

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Abstract

The human genome is composed of distinct genomic regions that are susceptible to various types of somatic mutations. Among these, Short Tandem Repeats (STRs) stand out as the most mutable genetic elements. STRs are short repetitive polymorphic sequences, predominantly situated within noncoding sectors of the genome. The intrinsic repetition characterizing these sequences makes them highly mutable in vivo. Consequently, this characteristic provides the chance to unravel the natural developmental history of human viable cells retrospectively. However, STRs also introduce stutter noise in vitro amplification, which makes their analysis challenging. Here we describe our integrated biochemical-computational platform for single-cell lineage analysis. It consists of a pipeline whose inputs are single cells and whose output is a lineage tree of input cells.

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Humans Mutation Cell Lineage Single-Cell Analysis Microsatellite Repeats Genome, Human Computational Biology Software Cancer Human Lineage tree Retrospective Short tandem repeats Single cell Journal Article

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Yaara Neumeier, Ofir Raz, Liming Tao, Zipora Marx, Ehud Shapiro. 2025. Tracking Somatic Mutations for Lineage Reconstruction.. https://doi.org/10.1007/978-1-0716-4310-5_2

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