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NMPP: a user-customized NimbleGen microarray data processing pipeline.

Xiangfeng Wang·Hang He·Lei Li·Runsheng Chen·Xing Wang Deng·Songgang Li
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Abstract

UNLABELLED: NMPP package is a bundle of user-customized tools based on established algorithms and methods to process self-designed NimbleGen microarray data. It features a command-line-based integrative processing procedure that comprises five major functional components, namely the raw microarray data parsing and integrating module, the array spatial effect smoothing and visualization module, the probe-level multi-array normalization module, the gene expression intensity summarization module and the gene expression status inference module. AVAILABILITY: http://plantgenomics.biology.yale.edu/nmpp

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AlgorithmsGene Expression ProfilingOligonucleotide Array Sequence AnalysisSoftwareUser-Computer InterfaceJournal ArticleResearch Support, U.S. Gov't, Non-P.H.S.

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Xiangfeng Wang, Hang He, Lei Li, Runsheng Chen, Xing Wang Deng, Songgang Li. 2006-10-12. NMPP: a user-customized NimbleGen microarray data processing pipeline.. https://doi.org/10.1093/bioinformatics%2Fbtl525

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