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TM4 microarray software suite.

Alexander I Saeed·Nirmal K Bhagabati·John C Braisted·Wei Liang·Vasily Sharov·Eleanor A Howe·Jianwei Li·Mathangi Thiagarajan·Joseph A White·John Quackenbush
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Abstract

Powerful specialized software is essential for managing, quantifying, and ultimately deriving scientific insight from results of a microarray experiment. We have developed a suite of software applications, known as TM4, to support such gene expression studies. The suite consists of open-source tools for data management and reporting, image analysis, normalization and pipeline control, and data mining and visualization. An integrated MIAME-compliant MySQL database is included. This chapter describes each component of the suite and includes a sample analysis walk-through.

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AlgorithmsAnimalsGene Expression ProfilingHumansOligonucleotide Array Sequence AnalysisSoftwareJournal ArticleReview

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Alexander I Saeed, Nirmal K Bhagabati, John C Braisted, Wei Liang, Vasily Sharov, Eleanor A Howe, Jianwei Li, Mathangi Thiagarajan, Joseph A White, John Quackenbush. 2006. TM4 microarray software suite.. https://doi.org/10.1016/s0076-6879(06)11009-5

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