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PubMed · 16882649

Nemo: an evolutionary and population genetics programming framework.

Frédéric Guillaume·Jacques Rougemont
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Abstract

UNLABELLED: Nemo is an individual-based, genetically explicit and stochastic population computer program for the simulation of population genetics and life-history trait evolution in a metapopulation context. It comes as both a C++ programming framework and an executable program file. Its object-oriented programming design gives it the flexibility and extensibility needed to implement a large variety of forward-time evolutionary models. It provides developers with abstract models allowing them to implement their own life-history traits and life-cycle events. Nemo offers a large panel of population models, from the Island model to lattice models with demographic or environmental stochasticity and a variety of already implemented traits (deleterious mutations, neutral markers and more), life-cycle events (mating, dispersal, aging, selection, etc.) and output operators for saving data and statistics. It runs on all major computer platforms including parallel computing environments. AVAILABILITY: The source code, binaries and documentation are available under the GNU General Public License at http://nemo2.sourceforge.net.

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Biological EvolutionChromosome MappingComputer SimulationEvolution, MolecularGenetics, PopulationModels, GeneticQuantitative Trait LociSoftwareJournal ArticleResearch Support, Non-U.S. Gov't

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Frédéric Guillaume, Jacques Rougemont. 2006-07-31. Nemo: an evolutionary and population genetics programming framework.. https://doi.org/10.1093/bioinformatics%2Fbtl415

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