Global multiple-sequence alignment with repeats.

Michael Sammeth; Jaap Heringa

doi:10.1002/prot.20957

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PubMed · 16609972

Global multiple-sequence alignment with repeats.

Michael Sammeth·Jaap Heringa

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Abstract

Repeating fragments in biological sequences are often essential for structure and function. Over the years, many methods have been developed to recognize repeats or to multiply align protein sequences. However, the integration of these two methodologies has been largely unexplored to date. Here, we present a new method capable of globally aligning multiple input sequences under the constraints of a given repeat analysis. The method supports different stringency modes to adapt to various levels of detail and reliability of the repeat information available.

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Amino Acid Sequence DNA Models, Theoretical Proteins Repetitive Sequences, Amino Acid Repetitive Sequences, Nucleic Acid Sensitivity and Specificity Sequence Alignment Sequence Homology, Amino Acid Journal Article Research Support, Non-U.S. Gov't

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Michael Sammeth, Jaap Heringa. 2006-07-01. Global multiple-sequence alignment with repeats.. https://doi.org/10.1002/prot.20957

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