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PubMed · 15593402

CGH-Plotter: MATLAB toolbox for CGH-data analysis.

Reija Autio·Sampsa Hautaniemi·Päivikki Kauraniemi·Olli Yli-Harja·Jaakko Astola·Maija Wolf·Anne Kallioniemi
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Abstract

CGH-Plotter is a MATLAB toolbox with a graphical user interface for the analysis of comparative genomic hybridization (CGH) microarray data. CGH-Plotter provides a tool for rapid visualization of CGH-data according to the locations of the genes along the genome. In addition, the CGH-Plotter identifies regions of amplifications and deletions, using k-means clustering and dynamic programming. The application offers a convenient way to analyze CGH-data and can also be applied for the analysis of cDNA microarray expression data. CGH-Plotter toolbox is platform independent and requires MATLAB 6.1 or higher to operate.

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Cluster AnalysisData DisplayData Interpretation, StatisticalHybridization, GeneticInternetProtein Array AnalysisResearch DesignSignal Processing, Computer-AssistedUser-Computer InterfaceJournal Article

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Reija Autio, Sampsa Hautaniemi, Päivikki Kauraniemi, Olli Yli-Harja, Jaakko Astola, Maija Wolf, Anne Kallioniemi. 2003-09-01. CGH-Plotter: MATLAB toolbox for CGH-data analysis.. https://doi.org/10.1093/bioinformatics%2Fbtg230

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