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arrayMagic: two-colour cDNA microarray quality control and preprocessing.

Andreas Buness·Wolfgang Huber·Klaus Steiner·Holger Sültmann·Annemarie Poustka
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Abstract

UNLABELLED: arrayMagic is a software package for quality control and preprocessing of two-colour cDNA microarray data. The automated analysis pipeline comprises data import, normalization, replica merging, quality diagnostics and data export. The script-based processing combines reproducibility and flexibility at high-throughput and provides quality-assured and preprocessed microarray data to high-level follow-up analysis. AVAILABILITY: The R package arrayMagic is available with BSD license at http://www.bioconductor.org CONTACT: a.buness@dkfz.de SUPPLEMENTARY INFORMATION: The package contains documentation in the form of manual pages and a vignette with a guided tour of a typical workflow.

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AlgorithmsDatabase Management SystemsGene Expression ProfilingInformation Storage and RetrievalOligonucleotide Array Sequence AnalysisQuality ControlReproducibility of ResultsSoftwareUser-Computer InterfaceJournal Article

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Andreas Buness, Wolfgang Huber, Klaus Steiner, Holger Sültmann, Annemarie Poustka. 2004-09-28. arrayMagic: two-colour cDNA microarray quality control and preprocessing.. https://doi.org/10.1093/bioinformatics%2Fbti052

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