Search PubMed⌕ Search
Home/Archive/PubMed

PubMed · 15324759

ODIN-object-oriented development interface for NMR.

Thies H Jochimsen·Michael von Mengershausen
View original source ↗Export metadata ↓

Abstract

A cross-platform development environment for nuclear magnetic resonance (NMR) experiments is presented. It allows rapid prototyping of new pulse sequences and provides a common programming interface for different system types. With this object-oriented interface implemented in C++, the programmer is capable of writing applications to control an experiment that can be executed on different measurement devices, even from different manufacturers, without the need to modify the source code. Due to the clear design of the software, new pulse sequences can be created, tested, and executed within a short time. To post-process the acquired data, an interface to well-known numerical libraries is part of the framework. This allows a transparent integration of the data processing instructions into the measurement module. The software focuses mainly on NMR imaging, but can also be used with limitations for spectroscopic experiments. To demonstrate the capabilities of the framework, results of the same experiment, carried out on two NMR imaging systems from different manufacturers are shown and compared with the results of a simulation.

Explore related subjects

Brain MappingHumansMagnetic Resonance SpectroscopyProgramming LanguagesSoftwareUser-Computer InterfaceJournal Article

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Thies H Jochimsen, Michael von Mengershausen. 2004. ODIN-object-oriented development interface for NMR.. https://doi.org/10.1016/j.jmr.2004.05.021

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related citations

PubMed2005

Volumetric localization of epileptic activities in tuberous sclerosis using synthetic aperture magnetometry.

BACKGROUND: Magnetoencephalography (MEG) is a novel noninvasive technique for localizing epileptic zones. Tuberous sclerosis complex (TSC) is often associated with medically refractory epilepsy with multiple epileptic zones. Surgical treatment of TSC requires accurate localization of epileptogenic tubers. OBJECTIVE: The objective of this study was to introduce a new MEG technique, synthetic aperture magnetometry (SAM), to volumetrically localize irritable zones and clarify the correlations between SAM, dipole modeling and anatomical tubers. MATERIALS AND METHODS: Eight pediatric patients with TSC confirmed by clinical and neuroimaging findings were retrospectively studied. MEG data were recorded using a whole-cortex CTF OMEGA system. Sleep deprivation was employed to provoke epileptiform activity. Irritable zones were localized using both dipole modeling and SAM. RESULTS: MRI detected 42 tubers in the eight patients. Dipole modeling localized 28 irritable zones, and 19 out of the 28 zones were near tubers (19/42, 45%). SAM found 51 irritable zones, and 31 out of the 51 zones were near tubers (31/42, 74%). Among the 51 irritable zones determined by SAM, thirty-five zones were in 1-35 Hz, nine zones were in 35-60 Hz, and seven zones were in 60-120 Hz. CONCLUSIONS: The new method, SAM, yielded very plausible equivalent sources for patients who showed anatomical tubers on MRI. Compared to conventional dipole modeling, SAM appeared to offer increased detection of irritable zones and beneficial volumetric and frequency descriptions.

Brain Mapping↗
PubMed2005

Bioinformatics and functional magnetic resonance imaging in clinical populations: practical aspects of data collection, analysis, interpretation, and management.

In this paper the authors review the issues associated with bioinformatics and functional magnetic resonance (fMR) imaging in the context of neurosurgery. They discuss the practical aspects of data collection, analysis, interpretation, and the management of large data sets, and they consider the challenges involved in the adoption of fMR imaging into clinical neurosurgical practice. Their goal is to provide neurosurgeons and other clinicians with a better understanding of some of the current issues associated with bioinformatics or neuroinformatics and fMR imaging. Thousands to tens of thousands of images are typically acquired during an fMR imaging session. It is essential to follow an activation task paradigm exactly to obtain an accurate representation of cortical activation. These images are then interactively postprocessed offline to produce an activation map, or in some cases a series of maps. The maps may then be viewed and interpreted in consultation with a neurosurgeon and/or other clinicians. After this consultation, long-term archiving of the processed fMR activation maps along with the standard structural MR images is a complex but necessary final step in this process. The fMR modality represents a valuable tool in the neurosurgical planning process that is still in the developmental stages for routine clinical use, but holds exceptional promise for patient care.

Brain Mapping↗
PubMed2005

Bilateral brain processes for comprehending natural language.

Comprehension of natural language--stories, conversations, text--is very simple for those doing the comprehending and very complex for cognitive neuroscientists. It also presents a paradox: the advantage of the left hemisphere (LH) for most language tasks is one of the best-established facts about the brain; yet, when it comes to comprehending complex, natural language, the right hemisphere (RH) might play an important role. Accumulated evidence from neuropsychology, neuroimaging, and neuroanatomy suggests at least three roughly separable (but highly interactive) components of semantic processing. Each process in turn has bilateral components, with the RH component performing coarser computations for the same general process. Examining asymmetrical brain and cognitive functions provides a unique opportunity for understanding the neural basis of complex cognition.

Brain Mapping↗