Search PubMed⌕ Search

PubMed · 15137741

A PNA4 quadruplex.

Abstract

A tetrameric PNA, TGGG, has been shown to form an intermolecular G-quadruplex. Nanoelectrospray mass spectrometry, combined with solution-phase H/D exchange, established formation of a specific tetramolecular complex. UV melting studies show that this complex undergoes a quadruplex melting transition. This is a novel four-stranded structure that offers the gross structural features of a DNA quadruplex, but without the negatively charged backbone.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Yamuna Krishnan-Ghosh, Elaine Stephens, Shankar Balasubramanian. 2004-05-19. A PNA4 quadruplex.. https://doi.org/10.1021/ja031508f

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related citations

Hazard identification for contaminants.

In recent years, the recognition of generation of large quantities of toxicants and their by-products due to the industrial and/or cultural activities and transport and their persistence in the environment and biological activities brings out the necessity and importance of their assessment of risk they pose to the ecosystems (e.g. aquatic environment-coastal waters, rivers, lakes and ground water). Indeed, understanding the impacts of contaminants on the environment, including the organisms which live in it, is rather complicated. Nevertheless, the need for protection of the scarce natural resources in the environment and wiser use of them brings the necessity and importance of focusing more attention to the issue. Accordingly the process of ecological risk assessment (ERA) has evolved rapidly since the Environmental Protection Agency (EPA) issued a framework for ecological risk assessment in 1992. The ecological risk assessment involves three stages in a continuous process: (1) problem formulation (problem identification-hazard identification), (2) the analysis of exposure and effects and (3) risk characterisation. Risk management follows the risk characterisation. Of these stages, problem identification is the most critical one which establishes the direction and scope of the ecological risk assessment. The stage involves identifying the actual environmental value(s) to be protected (assessment endpoints) and selecting ways in which these can be measured and evaluated (measurement endpoints). The accuracy of the risk estimation is largely based on the availability of the key information about the contaminant characteristics, ecosystem at risk and ecological effects and the less uncertainty associated with them. The key information required during this phase of the risk assessment process are as follows: (a) potential/actual contaminant of concern, (b) source of contaminant; current and historic use, (c) mode of action of the contaminant, (d) contaminant characteristics (e.g. physical/chemical properties and environmental behaviour, persistence in the ecosystem, transformation products and bioaccumulation), (e) ecosystem potentially at risk and (f) areas of uncertainty. Finally based on these information a conceptual model has to be developed to define the possible exposure and assessment scenarios. Herein, the aforementioned key issues concerning the problem-hazard identification stage of ecological risk assessment for contaminants have been briefly reviewed.

Chemical Phenomena↗

Physicochemical characteristics of reverse micelles of polyoxyethylene nonyl phenol in different organic solvents.

The association of polyoxyethylene nonyl phenol (Igepal) in four different organic solvents such as chloroform, carbon tetrachloride, cyclohexane, and heptane has been studied. The critical micellar concentration of the reverse micelle (RM) formed in different nonaqueous media has been determined using four different techniques: UV-visible spectroscopy, fluorescence spectroscopy, Stokes shift, and NMR spectroscopic studies. From the correlation of cmc with hydrophile-lipophile balance (HLB), we have found that cmc decreases with decrease in HLB. The obtained cmc values using different methods have been found to be consistent and facilitate the determination of DeltaG values associated with the micellization. The association constant of the dye molecule Safranine T (ST) with the reverse micelle, aggregation number of the surfactant monomer, and location of fluorophore in the RM have been determined. The vertical ionization potential of Igepal, electron affinity of the dye, and the degree of charge transfer have been estimated by the theoretical AM1 calculations. A linear relationship has been obtained between cmc(s) and the ionization potential of the solvents. The polarity of the micelle solubilization sites has been determined from the solvatochromic shift, Kosower Z value, and ET(30) value.

Chemical Phenomena↗

Generalized mean-field theory relating helix tilt in a bilayer to lipid disorder.

We present a generalized theory relating the helix tilt angle in a bilayer to lipid disorder. In doing so, we consider a theory performed earlier [Biophys. Chem., 86 (2000) 79] and generalize it within a nonextensive formalism. The generalized theory provides a method to compare the rotational barriers for different helices in lipid bilayers, accounting for long-range interactions via a parameter which is called "entropic index". The results obtained could lead to point out future experiments which might shed light on lipid-protein interactions.

Chemical Phenomena↗